Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028771 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 5.7e-52 207.2 98 100.0
CSS0049852 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 2.3e-37 158.7 113 72.6
CSS0032606 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 5.1e-37 157.5 113 74.3
CSS0015425 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 6.9e-34 147.1 113 67.3
CSS0042763 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 1.1e-31 139.8 113 67.3
CSS0047038 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 1.7e-19 99.4 112 57.1
Dinv13353 Davidia involucrata HOM05D000590 ORTHO05D006658 1.7e-16 89.4 52 80.8
Dinv26700 Davidia involucrata HOM05D000943 ORTHO05D006658 1.7e-16 89.4 52 84.6
Ciclev10021099m.g Citrus clementina HOM05D000590 ORTHO05D006658 2.5e-15 85.5 51 80.4
Thecc.07G135100 Theobroma cacao HOM05D000590 ORTHO05D006658 3.2e-15 85.1 52 78.8
Oeu005375.1 Olea europaea HOM05D000590 ORTHO05D006658 7.2e-15 84.0 52 73.1
Gohir.A04G045500 Gossypium hirsutum HOM05D000590 ORTHO05D006658 9.4e-15 83.6 49 79.6
Gohir.D05G337300 Gossypium hirsutum HOM05D000590 ORTHO05D006658 9.4e-15 83.6 49 79.6
Gorai.009G361500 Gossypium raimondii HOM05D000590 ORTHO05D006658 9.4e-15 83.6 49 79.6
GSVIVG01014083001 Vitis vinifera HOM05D000590 ORTHO05D006658 9.4e-15 83.6 51 78.4
Actinidia12609 Actinidia chinensis HOM05D000590 ORTHO05D006658 1.2e-14 83.2 52 76.9
Hund10399 Selenicereus undatus HOM05D000590 ORTHO05D006658 2.1e-14 82.4 50 78.0
DCAR_019620 Daucus carota HOM05D000590 ORTHO05D006658 2.7e-14 82.0 51 74.5
QL08p025144 Quercus lobata HOM05D000590 ORTHO05D006658 2.7e-14 82.0 51 74.5
TAR627G0624 Trochodendron aralioides HOM05D000590 ORTHO05D006658 2.7e-14 82.0 52 76.9
Haze_08447 Corylus avellana HOM05D000590 ORTHO05D006658 3.6e-14 81.6 52 75.0
Ah.06g187630 Amaranthus hybridus HOM05D000590 ORTHO05D006658 4.7e-14 81.3 51 74.5
COL.COLO4_17463 Corchorus olitorius HOM05D000590 ORTHO05D006658 6.1e-14 80.9 52 75.0
Duzib213G0379 Durio zibethinus HOM05D000590 ORTHO05D006658 8.0e-14 80.5 51 76.5
PGR031G2043 Punica granatum HOM05D000590 ORTHO05D006658 8.0e-14 80.5 50 76.0
THA.LOC104815580 Tarenaya hassleriana HOM05D000590 ORTHO05D006658 8.0e-14 80.5 52 71.2
Atru.chr2.1901 Acer truncatum HOM05D000590 ORTHO05D006658 1.4e-13 79.7 50 76.0
vmacro11976 Vaccinium macrocarpon HOM05D000590 ORTHO05D006658 1.4e-13 79.7 47 80.9
Aqoxy1G01876 Aquilegia oxysepala HOM05D000590 ORTHO05D006658 1.8e-13 79.3 50 72.0
PSO675G2935 Papaver somniferum HOM05D000590 ORTHO05D006658 1.8e-13 79.3 52 73.1
CiPaw.11G155300 Carya illinoinensis HOM05D000590 ORTHO05D006658 2.3e-13 79.0 50 74.0
Nn6g34385 Nelumbo nucifera HOM05D000590 ORTHO05D006658 2.3e-13 79.0 52 73.1
TWI39G0773 Tripterygium wilfordii HOM05D000590 ORTHO05D006658 2.3e-13 79.0 49 75.5
BcaB06g25360 Brassica carinata HOM05D000590 ORTHO05D006658 3.0e-13 78.6 52 67.3
Manes.03G078000 Manihot esculenta HOM05D000590 ORTHO05D006658 3.0e-13 78.6 51 74.5
ClCG11G017110 Citrullus lanatus HOM05D000590 ORTHO05D006658 4.0e-13 78.2 50 72.0
CsaV3_4G032770 Cucumis sativus L. HOM05D000590 ORTHO05D006658 4.0e-13 78.2 50 72.0
PSO541G5312 Papaver somniferum HOM05D000590 ORTHO05D006658 4.0e-13 78.2 52 71.2
THA.LOC104822584 Tarenaya hassleriana HOM05D000590 ORTHO05D006658 4.0e-13 78.2 51 68.6
MSTRG.6694 Avicennia marina HOM05D000590 ORTHO05D006658 5.2e-13 77.8 52 71.2
Sc07g0002360 Simmondsia chinensis HOM05D000590 ORTHO05D006658 6.8e-13 77.4 46 73.9
MELO3C025676.2 Cucumis melo HOM05D000590 ORTHO05D006658 1.2e-12 76.6 50 70.0
TWI38G1174 Tripterygium wilfordii HOM05D000590 ORTHO05D006658 1.5e-12 76.3 50 76.0
AL3G27050 Arabidopsis lyrata HOM05D000590 ORTHO05D006658 2.0e-12 75.9 52 65.4
Sabra11G0077600 Salix brachista HOM05D000590 ORTHO05D006658 2.0e-12 75.9 51 68.6
Sopen07g030360 Solanum pennellii HOM05D000590 ORTHO05D006658 2.0e-12 75.9 48 72.9
EL10Ac4g08438 Beta vulgaris HOM05D000590 ORTHO05D006658 2.6e-12 75.5 51 68.6
Eucgr.F03226 Eucalyptus grandis HOM05D000590 ORTHO05D006658 2.6e-12 75.5 50 68.0
Migut.H02030 Erythranthe guttata HOM05D000590 ORTHO05D006658 3.4e-12 75.1 53 67.9
Aqoxy6G01959 Aquilegia oxysepala HOM05D000590 ORTHO05D006658 4.4e-12 74.7 50 68.0
A05p34710 Brassica napus HOM05D000590 ORTHO05D006658 4.4e-12 74.7 47 68.1
Potri.001G382500 Populus trichocarpa HOM05D000590 ORTHO05D006658 4.4e-12 74.7 51 66.7
Sed0014657 Sechium edule HOM05D000590 ORTHO05D006658 4.4e-12 74.7 48 68.8
Solyc07g062100.4 Solanum lycopersicum HOM05D000590 ORTHO05D006658 5.7e-12 74.3 48 72.9
PGSC0003DMG400007086 Solanum tuberosum HOM05D000590 ORTHO05D006658 5.7e-12 74.3 48 72.9
BcaC05g29040 Brassica carinata HOM05D000590 ORTHO05D006658 9.8e-12 73.6 47 66.0
C05p52510 Brassica napus HOM05D000590 ORTHO05D006658 9.8e-12 73.6 47 66.0
BolC5t33934H Brassica oleracea HOM05D000590 ORTHO05D006658 9.8e-12 73.6 47 66.0
AUR62013940 Chenopodium quinoa HOM05D000590 ORTHO05D006658 9.8e-12 73.6 48 72.9
HanXRQChr11g0330421 Helianthus annuus HOM05D000590 ORTHO05D006658 9.8e-12 73.6 48 72.9
BraA05t22287Z Brassica rapa HOM05D000590 ORTHO05D006658 2.2e-11 72.4 46 67.4
CANSAT56G2009 Cannabis sativa HOM05D000590 ORTHO05D006658 2.2e-11 72.4 47 70.2
Potri.011G103100 Populus trichocarpa HOM05D000590 ORTHO05D006658 3.7e-11 71.6 51 66.7
Sabra11G0082500 Salix brachista HOM05D000590 ORTHO05D006658 3.7e-11 71.6 51 66.7
AUR62019672 Chenopodium quinoa HOM05D000590 ORTHO05D006658 4.8e-11 71.2 48 70.8
MBI02_g37325_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006658 4.8e-11 71.2 50 66.0
Lsat_1_v5_gn_7_100300 Lactuca sativa HOM05D000590 ORTHO05D006658 8.3e-11 70.5 48 70.8
MD03G1251300 Malus domestica HOM05D000590 ORTHO05D006658 8.3e-11 70.5 47 63.8
Cc05_g10610 Coffea canephora HOM05D000590 ORTHO05D006658 1.1e-10 70.1 52 65.4
ECA236G0454 Erigeron canadensis HOM05D000590 ORTHO05D006658 1.1e-10 70.1 50 66.0
Glyma.15G210600 Glycine max HOM05D000590 ORTHO05D006658 1.1e-10 70.1 50 66.0
Zm00001eb122030 Zea mays HOM05D000590 ORTHO05D006658 1.1e-10 70.1 45 68.9
SGA_v2.0_scaffold130G34256 Striga asiatica HOM05D000590 ORTHO05D006658 1.4e-10 69.7 48 68.8
Aa31LG8G1960 Aethionema arabicum HOM05D000590 ORTHO05D006658 2.4e-10 68.9 52 59.6
Thhalv10021064m.g Eutrema salsugineum HOM05D000590 ORTHO05D006658 2.4e-10 68.9 52 63.5
FvH4_3g17540 Fragaria vesca HOM05D000590 ORTHO05D006658 3.1e-10 68.6 47 63.8
FAN16G1913 Fragaria x ananassa HOM05D000590 ORTHO05D006658 3.1e-10 68.6 47 63.8
FAN21G3792 Fragaria x ananassa HOM05D000590 ORTHO05D006658 3.1e-10 68.6 47 63.8
FAN25G1530 Fragaria x ananassa HOM05D000590 ORTHO05D006658 3.1e-10 68.6 47 63.8
RcHm_v2.0_Chr5g0029281 Rosa chinensis HOM05D000590 ORTHO05D006658 3.1e-10 68.6 47 63.8
Sp3g12970 Schrenkiella parvula HOM05D000590 ORTHO05D006658 3.1e-10 68.6 51 62.7
Carub.0003s1441 Capsella rubella HOM05D000590 ORTHO05D006658 4.1e-10 68.2 52 63.5
FAN11G1469 Fragaria x ananassa HOM05D000590 ORTHO05D006658 4.1e-10 68.2 47 63.8
Prupe.4G155300 Prunus persica HOM05D000590 ORTHO05D006658 4.1e-10 68.2 47 61.7
arahy.Tifrunner.gnm1.ann1.14DVUV Arachis hypogaea HOM05D000590 ORTHO05D006658 5.4e-10 67.8 48 62.5
arahy.Tifrunner.gnm1.ann1.4S3ZRX Arachis hypogaea HOM05D000590 ORTHO05D006658 5.4e-10 67.8 48 62.5
A01p39070 Brassica napus HOM05D000590 ORTHO05D006658 5.4e-10 67.8 47 59.6
CARHR089680 Cardamine hirsuta HOM05D000590 ORTHO05D006658 5.4e-10 67.8 52 61.5
AT3G14740 Arabidopsis thaliana HOM05D000590 ORTHO05D006658 7.0e-10 67.4 52 61.5
BcaC09g48444 Brassica carinata HOM05D000590 ORTHO05D006658 7.0e-10 67.4 49 57.1
C01p49700 Brassica napus HOM05D000590 ORTHO05D006658 7.0e-10 67.4 49 57.1
VMungo1127G1365 Vigna mungo HOM05D000590 ORTHO05D006658 9.1e-10 67.0 50 62.0
Phvul.011G170000 Phaseolus vulgaris HOM05D000590 ORTHO05D006658 1.6e-09 66.2 50 60.0
TPR.G16489 Trifolium pratense HOM05D000590 ORTHO05D006658 2.0e-09 65.9 48 62.5
RcHm_v2.0_Chr5g0029161 Rosa chinensis HOM05D000590 ORTHO05D006658 3.5e-09 65.1 47 59.6
Lalb_Chr01g0006941 Lupinus albus HOM05D000590 ORTHO05D006658 1.3e-08 63.2 50 56.0
Glyma.15G211600 Glycine max HOM05D000590 ORTHO05D006658 3.8e-08 61.6 50 62.0
Medtr8g042510 Medicago truncatula HOM05D000590 ORTHO05D006658 5.0e-08 61.2 48 56.2
Lj8P145T49 Lonicera japonica HOM05D000590 ORTHO05D006658 8.5e-08 60.5 52 65.4
BolC1t04926H Brassica oleracea HOM05D000590 ORTHO05D006658 2.5e-07 58.9 49 53.1
CDE02G4695 Ceratophyllum demersum HOM05D000590 ORTHO05D006658 3.2e-07 58.5 51 52.9
Psat4g138760 Pisum sativum HOM05D000590 ORTHO05D006658 5.5e-07 57.8 48 52.1
HPP92_021749 Vanilla planifolia HOM05D000590 ORTHO05D006658 7.2e-07 57.4 48 54.2
CAN.G375.56 Capsicum annuum HOM05D000590 ORTHO05D006658 9.4e-07 57.0 36 75.0


User provided reference genes

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