Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.1e-64 248.8 120 100.0
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.7e-61 238.0 132 90.2
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-59 233.0 132 87.9
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.6e-59 230.3 132 87.1
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.9e-47 191.4 111 85.6
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 3.1e-44 181.8 111 80.2
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.1e-44 181.4 111 80.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.9e-44 180.6 111 79.3
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.0e-42 176.8 111 75.7
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 2.2e-42 175.6 111 76.6
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 5.0e-42 174.5 113 74.3
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 6.5e-42 174.1 110 78.2
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 6.5e-42 174.1 111 74.8
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 8.5e-42 173.7 111 76.6
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 8.5e-42 173.7 111 74.8
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 8.5e-42 173.7 111 74.8
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.4e-41 172.9 111 75.7
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 2.5e-41 172.2 111 74.8
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.5e-41 171.0 111 73.9
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 5.5e-41 171.0 111 75.7
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 7.2e-41 170.6 111 73.0
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 9.4e-41 170.2 111 73.0
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.2e-40 169.9 111 71.2
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.2e-40 169.9 111 73.0
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 1.6e-40 169.5 111 74.8
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.6e-40 169.5 111 73.0
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.6e-40 169.5 111 73.0
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.1e-40 169.1 107 73.8
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 2.1e-40 169.1 110 72.7
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.1e-40 169.1 111 73.0
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.1e-40 169.1 111 73.0
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.1e-40 169.1 111 73.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.1e-40 169.1 111 72.1
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 2.1e-40 169.1 111 72.1
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 2.1e-40 169.1 111 72.1
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.7e-40 168.7 119 73.1
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 3.6e-40 168.3 111 72.1
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 4.7e-40 167.9 111 70.3
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 4.7e-40 167.9 111 71.2
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 4.7e-40 167.9 111 70.3
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 6.1e-40 167.5 109 72.5
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.1e-40 167.5 113 69.9
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 7.9e-40 167.2 111 73.0
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 7.9e-40 167.2 111 73.0
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 7.9e-40 167.2 111 73.0
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 7.9e-40 167.2 111 72.1
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 7.9e-40 167.2 111 72.1
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 7.9e-40 167.2 111 71.2
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.4e-39 166.4 111 73.0
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.8e-39 166.0 111 73.0
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.3e-39 165.6 111 72.1
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 2.3e-39 165.6 111 68.5
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.3e-39 165.6 111 71.2
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.3e-39 165.6 111 70.3
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 3.0e-39 165.2 111 69.4
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.0e-39 165.2 111 71.2
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.0e-39 165.2 110 71.8
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.0e-39 165.2 110 71.8
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 3.9e-39 164.9 111 71.2
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 3.9e-39 164.9 111 68.5
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 5.1e-39 164.5 111 70.3
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 6.7e-39 164.1 111 68.5
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 8.8e-39 163.7 111 72.1
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 8.8e-39 163.7 111 67.6
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 8.8e-39 163.7 111 67.6
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 8.8e-39 163.7 111 71.2
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 8.8e-39 163.7 111 72.1
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.1e-38 163.3 111 69.4
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 2.0e-38 162.5 111 68.5
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 5.7e-38 161.0 111 66.7
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 5.7e-38 161.0 110 70.9
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 7.4e-38 160.6 111 69.4
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.8e-37 158.7 110 68.2
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 4.8e-37 157.9 111 70.3
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 4.8e-37 157.9 111 70.3
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 6.3e-37 157.5 110 68.2
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 6.3e-37 157.5 112 66.1
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 8.2e-37 157.1 111 67.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 8.2e-37 157.1 111 69.4
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 1.1e-36 156.8 112 66.1
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-36 156.8 112 66.1
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.1e-36 156.8 112 66.1
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 2.4e-36 155.6 112 65.2
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.4e-36 155.6 112 65.2
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.1e-36 155.2 110 68.2
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 3.1e-36 155.2 111 64.0
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 5.3e-36 154.5 111 68.5
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 7.0e-36 154.1 112 64.3
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 7.0e-36 154.1 116 69.8
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 7.0e-36 154.1 111 69.4
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.2e-35 153.3 111 64.0
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.0e-35 152.5 112 63.4
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 2.0e-35 152.5 111 64.9
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 2.6e-35 152.1 112 63.4
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 5.9e-35 151.0 110 67.3
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 7.7e-35 150.6 110 63.6
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 1.0e-34 150.2 112 63.4
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.3e-34 149.8 112 62.5
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.7e-34 149.4 112 62.5
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 3.8e-34 148.3 112 62.5
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.8e-34 148.3 111 64.0
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 5.0e-34 147.9 112 62.5
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 5.0e-34 147.9 111 67.6
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 6.5e-34 147.5 112 61.6
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.1e-33 146.7 110 59.1
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.4e-33 146.4 112 61.6
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.4e-33 146.4 112 61.6
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.2e-33 144.8 110 58.2
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 9.4e-33 143.7 110 64.5
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 9.4e-33 143.7 111 65.8
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 2.1e-32 142.5 110 61.8
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.6e-32 141.7 111 62.2
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.6e-32 141.7 111 64.9
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.3e-31 139.0 110 60.9
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.0e-31 138.7 76 80.3
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 3.9e-31 138.3 110 63.6
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.2e-31 137.9 78 76.9
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 2.8e-29 132.1 110 55.5
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 3.7e-29 131.7 111 55.9
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.2e-29 130.6 76 73.7
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 4.1e-28 128.3 76 68.4
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.0e-27 125.9 110 50.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.3e-26 123.2 87 64.4
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.5e-25 119.8 111 52.3
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 2.5e-25 119.0 110 50.9
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.3e-21 106.7 76 60.5
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.2e-21 105.9 102 54.9
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.1e-20 103.6 110 46.4
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.4e-20 103.2 102 53.9
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.5e-19 98.2 89 61.8
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.7e-18 96.3 65 73.8
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.7e-10 69.7 35 77.1
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 5.0e-10 68.2 79 39.2
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 7.2e-09 64.3 109 34.9
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.2e-08 63.5 109 32.1
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.4e-07 60.1 32 75.0
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.0e-07 58.9 59 47.5
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.2e-06 57.0 71 40.8
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.6e-06 55.8 87 32.2
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 7.5e-06 54.3 34 58.8


User provided reference genes

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