Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 2.9e-65 253.4 128 100.0
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 2.9e-65 253.4 128 100.0
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 8.9e-46 188.7 124 74.2
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 5.8e-45 186.0 127 70.9
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 7.0e-43 179.1 120 73.3
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 4.6e-42 176.4 125 70.4
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 2.3e-41 174.1 125 64.8
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 6.6e-41 172.6 125 64.0
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.1e-40 171.8 121 70.2
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 1.1e-40 171.8 128 64.1
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 1.1e-40 171.8 119 68.1
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 1.5e-40 171.4 122 69.7
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 3.3e-40 170.2 122 65.6
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 3.3e-40 170.2 125 63.2
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 1.4e-38 164.9 127 62.2
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 3.1e-38 163.7 127 63.8
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 9.9e-37 158.7 128 60.9
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 6.4e-36 156.0 126 57.9
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 1.1e-35 155.2 123 61.8
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 4.1e-35 153.3 125 60.0
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 6.0e-34 149.4 132 58.3
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 7.8e-34 149.1 90 81.1
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 7.8e-34 149.1 106 68.9
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 8.6e-33 145.6 128 53.9
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 8.6e-33 145.6 130 56.2
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 1.5e-32 144.8 98 69.4
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 1.9e-32 144.4 89 77.5
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 2.5e-32 144.1 98 71.4
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 7.3e-32 142.5 129 58.1
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 1.6e-31 141.4 129 55.8
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 2.1e-31 141.0 95 72.6
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 4.7e-31 139.8 93 73.1
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 8.1e-31 139.0 127 52.0
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 1.1e-30 138.7 129 56.6
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 1.4e-30 138.3 111 62.2
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 1.4e-30 138.3 93 68.8
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 6.8e-30 136.0 102 63.7
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 8.9e-30 135.6 98 64.3
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 3.4e-29 133.7 91 67.0
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 1.7e-28 131.3 105 58.1
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 2.2e-28 131.0 94 67.0
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 3.8e-28 130.2 127 48.0
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 4.9e-28 129.8 109 56.0
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 8.4e-28 129.0 93 65.6
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 2.4e-27 127.5 99 60.6
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 4.2e-27 126.7 96 64.6
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 5.4e-27 126.3 89 67.4
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 6.0e-26 122.9 80 75.0
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 1.3e-25 121.7 94 58.5
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 1.3e-25 121.7 82 69.5
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 1.3e-25 121.7 83 71.1
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 1.7e-25 121.3 75 74.7
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 2.3e-25 120.9 91 69.2
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 5.1e-25 119.8 79 73.4
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 8.7e-25 119.0 126 51.6
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 1.1e-24 118.6 75 73.3
Oeu048390.1 Olea europaea HOM05D000798 ORTHO05D000659 4.3e-24 116.7 120 51.7
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 7.3e-24 115.9 128 45.3
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 7.3e-24 115.9 128 45.3
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 7.3e-24 115.9 81 70.4
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 7.3e-24 115.9 118 50.0
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 1.2e-23 115.2 128 45.3
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 1.2e-23 115.2 81 67.9
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 4.7e-23 113.2 76 73.7
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 8.1e-23 112.5 77 68.8
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 1.8e-22 111.3 72 73.6
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 5.2e-22 109.8 85 56.5
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 9.0e-22 109.0 92 55.4
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 2.6e-21 107.5 98 54.1
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 2.6e-21 107.5 127 44.9
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 3.4e-21 107.1 85 61.2
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 3.4e-21 107.1 85 61.2
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 5.8e-21 106.3 69 78.3
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 2.9e-20 104.0 92 54.3
Peaxi162Scf00205g01111 Petunia axillaris HOM05D007426 ORTHO05D009167 2.9e-20 104.0 63 73.0
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 3.8e-20 103.6 101 51.5
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 8.4e-20 102.4 94 56.4
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 1.4e-19 101.7 81 60.5
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.9e-19 101.3 94 55.3
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.9e-19 101.3 94 55.3
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 2.1e-18 97.8 94 53.2
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 2.7e-18 97.4 96 51.0
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 1.0e-17 95.5 81 56.8
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 1.9e-16 91.3 134 38.1
HanXRQChr09g0260571 Helianthus annuus HOM05D007426 ORTHO05D009167 2.1e-15 87.8 93 46.2
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 4.8e-15 86.7 57 68.4
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 1.1e-14 85.5 84 54.8
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 1.1e-14 85.5 84 54.8
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 1.1e-14 85.5 81 54.3
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 4.5e-13 80.1 116 39.7
ATR1076G001 Amborella trichopoda HOM05D007426 ORTHO05D009167 9.9e-13 79.0 60 60.0
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 2.2e-12 77.8 128 35.2
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 3.8e-12 77.0 123 37.4
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 6.4e-12 76.3 128 34.4
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 8.4e-12 75.9 138 39.1
Os12g0152600 Oryza sativa ssp. japonica HOM05D025020 ORTHO05D009167 1.4e-11 75.1 102 45.1
Zm00001eb164150 Zea mays HOM05D025020 ORTHO05D009167 7.1e-11 72.8 138 39.9
Zm00001eb118640 Zea mays HOM05D025020 ORTHO05D009167 2.7e-10 70.9 138 39.1
Zm00001eb197020 Zea mays HOM05D025020 ORTHO05D009167 1.0e-09 68.9 75 46.7
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 2.3e-09 67.8 110 34.5
CDE04G3788 Ceratophyllum demersum HOM05D007639 ORTHO05D009509 1.5e-08 65.1 110 32.7
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 3.3e-08 63.9 105 32.4
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 3.3e-08 63.9 92 35.9
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 5.6e-08 63.2 109 29.4
Lsat_1_v5_gn_6_101541 Lactuca sativa HOM05D007390 ORTHO05D009114 5.6e-08 63.2 128 32.0
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.3e-07 62.0 109 30.3
ClCG10G008950 Citrullus lanatus HOM05D007893 ORTHO05D010042 1.6e-07 61.6 118 28.8
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 1.6e-07 61.6 110 30.9
TPR.G9703 Trifolium pratense HOM05D007426 ORTHO05D009167 2.1e-07 61.2 43 58.1
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 3.7e-07 60.5 92 35.9
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 3.7e-07 60.5 92 35.9
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 3.7e-07 60.5 109 31.2
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 1.1e-06 58.9 111 30.6
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.4e-06 58.5 117 24.8
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.4e-06 57.8 92 32.6
BcaC01g03329 Brassica carinata HOM05D007083 ORTHO05D008801 3.1e-06 57.4 75 37.3
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 4.0e-06 57.0 127 30.7
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 4.0e-06 57.0 117 26.5
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 5.3e-06 56.6 82 34.1
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 5.3e-06 56.6 103 27.2
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 5.3e-06 56.6 92 31.5
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 5.3e-06 56.6 128 30.5
vmacro09644 Vaccinium macrocarpon HOM05D007390 ORTHO05D009114 5.3e-06 56.6 123 27.6
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 6.9e-06 56.2 117 29.1
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 6.9e-06 56.2 91 30.8
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 6.9e-06 56.2 106 29.2
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 6.9e-06 56.2 106 29.2
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 9.0e-06 55.8 87 32.2


User provided reference genes

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