Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1600.1 839 100.0
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1460.7 841 89.8
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1427.9 841 88.1
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1417.1 842 86.7
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1395.6 838 85.4
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1391.7 842 86.3
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1389.8 839 85.2
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1387.9 839 85.3
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1384.0 838 85.2
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1377.1 837 84.5
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1369.8 841 83.9
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1369.0 840 83.3
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1367.4 839 83.7
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1363.2 840 83.2
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1362.1 837 83.6
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1360.9 838 82.9
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1357.4 837 84.0
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1357.4 840 83.1
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1357.0 837 82.6
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1355.1 837 84.0
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1354.3 837 82.3
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1354.0 837 83.6
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1353.6 837 83.8
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1347.4 840 82.7
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1345.5 839 83.1
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1344.3 840 82.6
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1340.9 838 82.0
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1338.9 840 82.3
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1337.8 836 82.3
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1325.1 860 80.3
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1324.7 845 80.6
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1320.1 837 80.3
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1319.3 839 80.8
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1315.4 839 81.8
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1313.9 841 80.1
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1313.1 839 81.3
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1312.7 839 80.1
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1312.0 840 80.1
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1310.4 839 79.7
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1308.5 837 79.5
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1305.8 839 80.1
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1305.4 839 80.6
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1303.9 839 80.2
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1303.1 840 80.6
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1302.7 840 81.2
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1302.0 839 80.5
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1300.8 839 79.9
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1297.0 840 80.5
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1296.6 929 74.4
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1293.9 840 79.0
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1293.9 839 80.2
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1292.7 840 79.0
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1292.7 839 80.5
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1291.6 841 79.4
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1291.6 839 80.1
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1291.2 833 80.6
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1290.0 840 79.4
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1288.5 840 78.7
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1288.5 837 80.0
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1286.9 840 78.6
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1281.5 839 79.5
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1281.5 840 78.7
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1281.2 840 78.3
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1277.7 840 78.0
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1276.9 856 76.9
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1276.2 856 76.9
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1276.2 837 79.6
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1275.0 840 78.5
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1274.2 838 77.9
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1273.8 839 77.8
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1271.1 841 78.1
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1270.8 842 77.9
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1268.1 839 77.8
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1267.3 841 78.1
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1266.1 840 77.7
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1265.8 855 78.5
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1265.4 837 79.0
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1261.9 841 77.6
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1261.5 841 77.6
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1261.1 855 78.4
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1260.7 838 78.8
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1260.0 839 77.1
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1258.0 839 77.4
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1257.3 839 78.2
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1256.5 837 76.5
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1238.8 861 78.7
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1221.1 808 78.6
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1217.2 839 74.4
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1217.2 746 83.0
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1209.5 998 65.8
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1203.7 841 73.2
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1192.9 857 73.0
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1192.2 724 84.5
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1181.8 839 73.9
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1169.5 841 74.2
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1162.1 840 71.7
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 3.7e-309 1064.7 838 69.7
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 9.1e-308 1060.1 684 79.8
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 5.9e-299 1030.8 721 72.4
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 5.0e-258 894.8 855 55.0
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 2.5e-257 892.5 522 86.8
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.9e-252 876.3 861 55.5
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 2.1e-235 819.7 544 77.0
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 1.5e-233 813.5 841 52.7
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.3e-233 812.4 543 75.5
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 2.1e-232 809.7 609 69.1
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 1.1e-228 797.3 749 57.7
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 3.0e-226 789.3 617 68.4
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.5e-214 750.4 512 77.1
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 2.4e-199 699.9 910 45.4
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 1.4e-196 690.6 428 84.1
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.8e-194 683.7 564 65.1
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 4.8e-192 675.6 447 80.5
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.7e-173 614.0 441 73.7
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 5.2e-162 575.9 395 73.9
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 1.7e-160 570.9 343 84.3
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 7.0e-151 538.9 382 75.1
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.0e-125 455.3 373 65.7
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 1.4e-122 444.9 341 68.3
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 3.2e-119 433.7 293 77.5
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 6.9e-114 416.0 428 57.2
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.3e-109 401.7 257 82.1
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 8.1e-107 392.5 234 82.1
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 6.9e-106 389.4 234 82.1
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 3.0e-101 374.0 856 32.6
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.8e-80 303.9 210 71.4
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 1.3e-75 288.9 864 27.8
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 5.1e-69 266.9 230 65.2
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 5.3e-66 256.9 271 55.7
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.2e-63 247.7 200 65.0
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.0e-60 238.4 288 47.9
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 6.3e-59 233.4 179 68.7
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 4.2e-55 220.7 210 64.8
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 9.4e-55 219.5 183 67.2
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 2.2e-48 198.4 121 77.7
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 1.1e-47 196.1 124 82.3
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 2.2e-43 181.8 105 91.4
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 4.5e-41 174.1 104 80.8
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 7.7e-41 173.3 104 80.8
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 8.0e-38 163.3 97 83.5
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 3.4e-36 157.9 95 78.9
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 7.5e-36 156.8 95 75.8
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 2.8e-35 154.8 130 60.8
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 6.3e-35 153.7 95 81.1
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 3.9e-32 144.4 232 40.5
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.2e-30 139.4 95 73.7
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.6e-30 139.0 95 75.8
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 5.4e-26 124.0 144 49.3
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 2.3e-24 118.6 188 41.0
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 6.6e-24 117.1 214 39.3
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 2.5e-23 115.2 87 74.7
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 9.5e-23 113.2 229 37.1
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.6e-20 105.1 99 48.5
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 3.4e-20 104.8 82 69.5
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 1.6e-17 95.9 78 70.5
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.6e-17 95.9 93 61.3
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.1e-15 89.7 72 68.1
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 7.6e-12 77.0 64 68.8
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 9.9e-12 76.6 158 36.1
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 2.4e-10 72.0 61 62.3
Nitab4.5_0008254g0010 Nicotiana tabacum HOM05D017975 ORTHO05D016189 5.6e-07 60.8 138 34.1
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 9.6e-07 60.1 59 52.5


User provided reference genes

Program Settings