Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 5223.3 2564 100.0
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 3896.7 2496 77.2
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 3808.1 2569 74.6
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 3712.9 2631 71.4
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 3708.3 2554 72.2
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 3014.2 2564 59.5
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 2980.3 2569 59.9
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 2964.1 2573 58.8
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 2950.6 2647 57.6
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 2927.5 2550 59.2
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 2917.9 2563 57.9
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2914.0 2562 58.2
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2909.4 2563 57.8
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2896.7 2563 57.7
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2886.7 2565 57.3
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 2874.3 2566 57.8
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2869.3 2559 57.3
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2867.8 2559 57.3
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2865.1 2570 57.0
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2860.9 2566 57.4
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2860.9 2562 57.3
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2860.1 2570 57.0
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2858.9 2573 57.1
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2851.6 2569 56.8
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2842.0 2563 56.8
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2841.6 2598 56.3
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2821.6 2600 57.5
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2775.3 2421 58.3
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2738.8 2580 55.1
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2714.9 2566 55.0
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2713.3 2555 54.7
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2710.3 2555 54.6
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2705.6 2567 54.5
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2701.0 2570 54.4
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2694.1 2571 54.6
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2682.5 2566 54.4
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2654.0 2579 53.8
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2629.7 2600 53.8
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2628.2 2550 54.1
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2610.5 2581 53.5
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2603.2 2547 53.6
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2600.9 2573 53.2
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2585.8 2562 52.8
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2580.8 2565 52.7
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2574.7 2572 52.3
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2555.8 2561 52.9
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2554.2 2566 53.0
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2544.2 2562 53.0
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2543.1 2550 53.4
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2510.3 2589 52.5
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2504.6 2551 53.0
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2491.5 2594 51.1
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2474.1 2570 51.5
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2456.8 2561 50.9
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 2447.9 2589 50.8
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2431.8 2574 50.6
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 2417.9 2545 50.7
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2405.9 2574 50.2
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2404.0 2406 52.7
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2401.3 2593 50.8
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2400.2 2591 50.8
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2385.5 2571 50.1
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2374.7 2570 49.5
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 2367.0 2424 52.8
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 2303.1 2564 48.8
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 2295.8 2570 48.4
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 2276.5 2538 50.0
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2276.1 2577 48.1
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2257.3 2576 48.0
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 2255.3 2573 48.0
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 2251.1 2577 47.9
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 2248.8 2570 47.6
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2246.1 2573 47.8
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 2241.1 2582 48.0
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 2236.5 2574 47.7
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 2212.2 1935 58.6
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 2194.1 2558 47.2
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 2185.6 2591 47.1
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1877.4 1971 50.7
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1862.0 1932 50.8
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1853.6 2568 41.4
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1791.9 1878 51.1
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1785.4 2556 41.4
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1743.8 2602 40.5
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1695.2 1363 62.2
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1620.5 1361 60.8
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1557.7 1352 58.1
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1447.6 1569 50.3
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1441.0 1542 51.0
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1438.3 1521 51.5
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1404.8 1370 52.8
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1342.4 1064 64.1
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1307.7 1102 60.9
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 0.0e+00 1183.7 1065 57.1
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 0.0e+00 1183.7 1065 57.1
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 0.0e+00 1153.7 1345 47.6
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1121.3 1086 53.8
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 0.0e+00 1119.8 1890 39.2
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 0.0e+00 1114.8 2762 30.1
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 0.0e+00 1096.6 1181 48.2
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 3.2e-247 860.5 1057 44.2
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 2.3e-237 827.8 1597 34.3
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 2.5e-223 781.2 1205 38.3
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 7.2e-223 779.6 569 69.1
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 2.1e-222 778.1 488 75.0
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.7e-219 768.5 578 64.7
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 4.1e-218 763.8 719 53.7
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.3e-207 727.6 555 66.3
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 2.6e-204 718.0 632 57.3
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.4e-189 669.1 1108 39.4
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.9e-183 648.7 2116 28.5
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 6.2e-182 643.7 786 47.2
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 5.3e-157 560.8 486 60.9
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 2.5e-146 525.4 460 53.3
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.3e-144 518.8 756 39.7
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.9e-139 501.9 543 53.4
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 1.9e-135 489.2 453 55.8
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.4e-125 455.7 947 33.1
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 2.9e-123 448.7 290 75.2
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.6e-116 426.4 1769 25.6
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 7.2e-106 391.0 230 80.9
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 2.3e-96 359.4 395 48.1
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 5.0e-83 315.1 197 79.2
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 6.6e-83 314.7 270 62.6
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 6.8e-80 304.7 230 65.2
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 1.2e-76 293.9 176 77.3
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 4.9e-70 271.9 644 30.4
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.7e-68 266.2 225 58.7
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 3.3e-66 259.2 430 42.1
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.6e-65 256.9 236 55.1
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 1.2e-52 214.2 304 43.8
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 2.8e-49 203.0 120 78.3
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 2.6e-47 196.4 227 46.3
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.4e-45 188.7 121 74.4
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 2.7e-44 186.4 275 40.0
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 4.3e-42 179.1 553 27.5
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 9.0e-40 171.4 265 38.1
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 1.4e-37 164.1 205 42.9
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 1.9e-37 163.7 183 45.4
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 2.1e-36 160.2 102 78.4
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 6.7e-35 155.2 114 65.8
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.5e-34 153.3 509 26.9
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.1e-29 137.9 109 63.3
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.4e-29 137.5 259 33.6
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.4e-29 137.5 293 32.8
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 4.2e-29 136.0 238 36.1
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.7e-28 133.3 100 70.0
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 4.6e-28 132.5 109 60.6
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 3.9e-27 129.4 88 73.9
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 3.3e-26 126.3 75 78.7
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 3.2e-21 109.8 239 30.5
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 1.3e-19 104.4 156 42.9
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 3.9e-19 102.8 122 46.7
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 8.7e-19 101.7 124 43.5
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 7.4e-18 98.6 117 48.7
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 1.3e-14 87.8 57 80.7
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 6.5e-14 85.5 116 45.7
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 8.5e-14 85.1 302 24.5
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 1.1e-13 84.7 76 52.6
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 2.5e-13 83.6 110 40.0
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 7.2e-13 82.0 120 35.0
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 9.4e-13 81.6 47 72.3
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 3.6e-12 79.7 90 45.6
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 6.1e-12 79.0 100 39.0


User provided reference genes

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