Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 6.9e-82 307.8 219 100.0
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 3.4e-81 305.4 219 99.5
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 5.1e-53 211.8 225 71.6
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 5.1e-53 211.8 225 71.6
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 5.1e-53 211.8 225 71.6
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 8.7e-53 211.1 224 71.0
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 1.5e-52 210.3 221 75.1
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 1.9e-52 209.9 225 68.0
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 2.5e-52 209.5 224 72.8
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 4.3e-52 208.8 221 72.9
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 9.7e-52 207.6 221 72.9
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 3.7e-51 205.7 222 73.4
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 4.8e-51 205.3 224 73.7
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 3.1e-50 202.6 226 69.5
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 5.3e-50 201.8 223 68.6
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 5.9e-49 198.4 223 73.5
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 1.0e-48 197.6 219 69.9
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 1.7e-48 196.8 222 70.7
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 2.2e-48 196.4 226 69.5
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 2.9e-48 196.1 227 67.8
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 8.5e-48 194.5 221 68.3
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 1.1e-47 194.1 221 73.3
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 1.4e-47 193.7 220 64.5
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 5.5e-47 191.8 219 73.1
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 9.4e-47 191.0 219 70.3
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 1.2e-46 190.7 220 73.2
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 1.6e-46 190.3 223 70.0
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 1.6e-46 190.3 222 70.7
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 2.1e-46 189.9 218 72.0
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 2.1e-46 189.9 221 63.8
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 2.1e-46 189.9 220 68.2
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 3.6e-46 189.1 223 68.6
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 3.6e-46 189.1 218 61.9
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 4.6e-46 188.7 229 66.4
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 6.1e-46 188.3 218 70.6
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 6.1e-46 188.3 219 68.9
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 7.9e-46 188.0 220 70.0
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 1.0e-45 187.6 218 66.1
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.4e-45 187.2 219 73.1
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 1.8e-45 186.8 220 69.5
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 2.3e-45 186.4 221 73.8
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 3.0e-45 186.0 218 70.6
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 3.0e-45 186.0 222 66.7
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 3.9e-45 185.7 224 64.7
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 3.9e-45 185.7 221 68.8
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 5.1e-45 185.3 225 67.6
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 1.1e-44 184.1 221 72.9
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 1.1e-44 184.1 222 71.2
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 1.5e-44 183.7 219 68.5
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 2.0e-44 183.3 221 64.3
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 2.6e-44 183.0 222 67.6
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.6e-44 183.0 215 70.7
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 2.6e-44 183.0 221 68.3
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 3.3e-44 182.6 221 60.2
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 1.3e-43 180.6 219 68.5
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 2.2e-43 179.9 220 62.3
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 4.8e-43 178.7 222 73.0
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 8.2e-43 177.9 221 69.2
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 1.1e-42 177.6 224 64.3
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 1.1e-42 177.6 221 70.6
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 3.1e-42 176.0 164 65.9
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 5.3e-42 175.3 218 62.8
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 1.5e-41 173.7 220 65.9
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 2.0e-41 173.3 217 71.0
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 2.0e-41 173.3 220 67.7
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 4.5e-41 172.2 221 67.4
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 4.5e-41 172.2 156 82.1
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 1.7e-40 170.2 222 63.1
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 5.0e-40 168.7 219 70.8
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 6.5e-40 168.3 166 64.5
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 1.4e-39 167.2 219 61.2
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.9e-39 166.8 150 78.7
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 9.4e-39 164.5 218 64.2
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 1.2e-38 164.1 228 63.6
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 3.6e-38 162.5 225 62.7
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.0e-37 161.0 219 64.8
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 2.3e-37 159.8 217 67.7
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 3.0e-37 159.5 217 67.3
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 8.8e-37 157.9 219 62.6
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.5e-36 157.1 221 62.0
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 2.6e-36 156.4 167 79.0
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 1.3e-35 154.1 219 48.4
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 2.2e-35 153.3 160 74.4
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 5.3e-34 148.7 215 67.0
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 2.0e-33 146.7 145 59.3
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 9.4e-31 137.9 159 75.5
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 3.0e-29 132.9 128 71.1
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 5.2e-29 132.1 217 53.0
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.5e-28 130.6 126 84.1
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 2.2e-27 126.7 166 71.7
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 6.3e-27 125.2 229 58.5
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 5.9e-25 118.6 149 74.5
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 2.2e-24 116.7 72 84.7
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 4.0e-21 105.9 143 69.9
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 2.8e-19 99.8 177 50.8
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 6.3e-19 98.6 106 84.9
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 8.3e-19 98.2 106 76.4
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.4e-18 97.4 107 78.5
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.4e-18 97.4 107 70.1
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 2.4e-18 96.7 118 50.8
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 5.9e-17 92.0 186 55.9
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.0e-16 91.3 177 54.8
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 6.5e-16 88.6 177 55.4
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 2.5e-15 86.7 121 41.3
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 5.5e-15 85.5 136 38.2
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 1.6e-14 84.0 60 70.0
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 2.8e-14 83.2 61 68.9
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 1.5e-12 77.4 88 47.7
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 2.6e-12 76.6 85 42.4
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 2.9e-08 63.2 106 41.5


User provided reference genes

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