Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 0.0e+00 1079.3 535 100.0
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 3.7e-73 280.0 552 38.4
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 4.7e-60 236.5 545 36.7
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.0e-54 218.8 200 59.5
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.2e-49 201.1 536 35.4
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 3.3e-45 187.2 529 31.9
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.6e-45 186.4 195 55.4
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 2.2e-41 174.5 165 59.4
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 6.4e-41 172.9 163 58.3
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.5e-40 171.0 200 52.0
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.2e-40 170.6 553 30.4
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 1.2e-39 168.7 198 52.0
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-39 168.7 200 52.0
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 6.0e-39 166.4 200 51.5
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 3.9e-38 163.7 154 57.8
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.3e-37 160.2 199 49.2
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 7.4e-37 159.5 199 48.7
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 7.4e-37 159.5 199 48.7
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 1.3e-36 158.7 195 47.7
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.6e-36 158.3 532 30.6
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 2.8e-36 157.5 152 59.2
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 6.2e-36 156.4 173 51.4
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.1e-35 155.6 161 49.1
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 1.1e-35 155.6 542 27.3
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 3.1e-35 154.1 199 48.2
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 6.9e-35 152.9 139 58.3
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 1.5e-34 151.8 152 54.6
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 2.6e-34 151.0 144 52.8
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 3.4e-34 150.6 160 53.1
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 4.5e-34 150.2 162 51.2
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 4.5e-34 150.2 197 46.2
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 5.8e-34 149.8 145 57.2
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.6e-34 149.4 152 57.2
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.7e-33 148.3 221 42.5
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 1.7e-33 148.3 217 44.7
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 2.9e-33 147.5 199 45.2
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 4.9e-33 146.7 168 52.4
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.9e-33 146.7 195 46.7
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.4e-33 146.0 195 46.7
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.4e-33 146.0 195 46.7
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.4e-33 146.0 195 46.7
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 8.4e-33 146.0 177 47.5
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.4e-32 145.2 149 59.7
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.4e-32 145.2 150 52.7
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 2.5e-32 144.4 195 45.6
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 3.2e-32 144.1 172 47.7
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 3.2e-32 144.1 143 53.8
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 4.2e-32 143.7 153 54.9
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 4.2e-32 143.7 179 45.8
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 5.5e-32 143.3 162 50.0
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 9.3e-32 142.5 559 24.7
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 9.3e-32 142.5 178 46.1
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 1.2e-31 142.1 152 53.3
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 2.1e-31 141.4 166 48.8
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.1e-31 141.4 166 41.0
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 2.1e-31 141.4 152 50.0
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 2.7e-31 141.0 142 53.5
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.5e-31 140.6 152 56.6
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 4.6e-31 140.2 121 59.5
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 4.6e-31 140.2 196 45.4
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 6.0e-31 139.8 130 59.2
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 6.0e-31 139.8 151 53.0
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 1.0e-30 139.0 153 51.6
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 3.9e-30 137.1 173 50.3
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 5.1e-30 136.7 175 47.4
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 6.7e-30 136.3 196 42.9
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.5e-29 135.2 166 48.8
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 9.7e-29 132.5 164 45.1
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.2e-28 131.3 172 49.4
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 2.2e-28 131.3 152 52.0
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.2e-28 131.3 176 45.5
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.7e-28 130.6 189 40.7
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 6.3e-28 129.8 156 48.1
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 1.8e-27 128.3 143 53.8
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 1.8e-27 128.3 154 51.3
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 2.4e-27 127.9 141 51.1
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 3.1e-27 127.5 142 54.9
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 3.1e-27 127.5 153 46.4
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 6.9e-27 126.3 178 43.8
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 6.9e-27 126.3 153 46.4
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.5e-26 125.2 231 34.6
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 2.6e-26 124.4 169 48.5
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 5.9e-26 123.2 153 48.4
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.0e-25 122.5 144 49.3
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 1.4e-24 118.6 551 25.4
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 1.9e-24 118.2 111 57.7
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 3.2e-24 117.5 148 43.9
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 5.5e-24 116.7 221 38.5
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 7.2e-24 116.3 165 39.4
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 1.2e-23 115.5 144 49.3
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.1e-23 114.8 147 46.9
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 6.1e-23 113.2 91 65.9
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 1.0e-22 112.5 125 50.4
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.4e-22 112.1 147 45.6
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.8e-22 111.7 144 48.6
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 5.1e-22 110.2 163 47.2
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 4.3e-21 107.1 163 42.9
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 4.3e-21 107.1 89 53.9
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 1.3e-20 105.5 192 43.8
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 1.7e-20 105.1 164 42.7
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 3.7e-20 104.0 275 29.5
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 3.7e-20 104.0 198 42.9
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 1.8e-19 101.7 155 42.6
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 1.8e-19 101.7 155 42.6
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 5.3e-19 100.1 163 47.2
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 5.3e-19 100.1 161 44.7
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 5.3e-19 100.1 159 45.3
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 9.1e-19 99.4 139 48.2
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.2e-18 99.0 166 40.4
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 1.2e-18 99.0 187 34.2
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 1.5e-18 98.6 149 49.7
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 2.6e-18 97.8 149 48.3
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.6e-18 97.8 160 41.9
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.6e-18 97.8 163 38.7
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 4.5e-18 97.1 148 50.0
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 5.9e-18 96.7 162 38.9
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 7.7e-18 96.3 157 47.1
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 7.7e-18 96.3 156 42.9
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.0e-17 95.9 149 47.7
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 1.0e-17 95.9 149 48.3
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.3e-17 95.5 191 40.3
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 2.9e-17 94.4 159 37.7
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 5.0e-17 93.6 164 39.6
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 6.5e-17 93.2 192 31.8
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 1.1e-16 92.4 169 42.6
Oeu057996.1 Olea europaea HOM05D003589 ORTHO05D005170 1.4e-16 92.0 204 33.3
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.5e-16 91.3 161 40.4
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 2.5e-16 91.3 150 41.3
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 9.4e-16 89.4 202 33.7
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 1.6e-15 88.6 202 32.7
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 1.6e-15 88.6 141 38.3
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 3.6e-15 87.4 218 32.6
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 6.1e-15 86.7 153 37.3
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 7.9e-15 86.3 196 34.7
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 6.7e-14 83.2 108 43.5
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 1.5e-13 82.0 73 60.3
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 2.0e-13 81.6 187 29.4
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 2.6e-13 81.3 167 34.1
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.7e-13 80.1 189 32.8
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.4e-13 79.7 195 31.3
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 7.4e-13 79.7 148 37.2
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.3e-12 79.0 108 38.0
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 2.8e-12 77.8 189 31.7
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.8e-12 77.0 183 31.7
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 1.1e-11 75.9 217 29.5
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.8e-11 75.1 184 29.9
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.4e-11 74.7 183 31.7
Nn2g10296 Nelumbo nucifera HOM05D003589 ORTHO05D005170 9.1e-11 72.8 185 33.0
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 1.2e-10 72.4 120 35.0
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 1.2e-10 72.4 213 30.0
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 2.0e-10 71.6 285 24.9
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 1.3e-09 68.9 161 36.0
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 8.5e-09 66.2 233 27.9
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 8.5e-09 66.2 149 33.6
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 3.2e-08 64.3 149 31.5
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 9.4e-08 62.8 154 28.6
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 2.7e-07 61.2 198 25.8
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 3.6e-07 60.8 198 25.8
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 4.7e-07 60.5 108 35.2
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 6.7e-06 56.6 130 35.4


User provided reference genes

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