Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.0e-34 149.4 72 100.0
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 9.0e-31 136.3 71 85.9
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 2.0e-30 135.2 72 88.9
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.0e-30 135.2 71 87.3
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 2.0e-30 135.2 72 88.9
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.6e-30 134.8 72 87.5
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.6e-30 134.8 72 87.5
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.6e-30 134.8 72 87.5
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 2.6e-30 134.8 72 87.5
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 5.8e-30 133.7 72 86.1
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.8e-30 133.7 72 86.1
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 7.6e-30 133.3 71 84.5
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.0e-29 132.9 72 88.9
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.0e-29 132.9 72 88.9
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.0e-29 132.9 72 86.1
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.3e-29 132.5 71 83.1
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 1.7e-29 132.1 72 86.1
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.7e-29 132.1 71 81.7
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.2e-29 131.7 71 83.1
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 2.2e-29 131.7 71 83.1
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 2.9e-29 131.3 71 81.7
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 2.9e-29 131.3 71 85.9
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 2.9e-29 131.3 71 85.9
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.8e-29 131.0 72 87.5
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.9e-29 130.6 72 87.5
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 4.9e-29 130.6 71 85.9
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.9e-29 130.6 71 81.7
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 4.9e-29 130.6 72 81.9
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 4.9e-29 130.6 72 81.9
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 6.5e-29 130.2 71 83.1
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.5e-29 130.2 72 80.6
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 8.4e-29 129.8 72 87.5
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 8.4e-29 129.8 72 88.9
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 8.4e-29 129.8 71 83.1
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-28 129.4 71 83.1
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-28 129.4 71 81.7
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 1.1e-28 129.4 73 83.6
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 1.1e-28 129.4 73 83.6
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.4e-28 129.0 71 81.7
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.4e-28 129.0 73 83.6
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 1.4e-28 129.0 72 81.9
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 1.9e-28 128.6 71 83.1
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 2.5e-28 128.3 71 85.9
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 2.5e-28 128.3 72 86.1
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 2.5e-28 128.3 71 83.1
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.2e-28 127.9 68 83.8
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 3.2e-28 127.9 71 81.7
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 4.2e-28 127.5 71 80.3
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.5e-28 127.1 71 80.3
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.5e-28 127.1 74 79.7
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 5.5e-28 127.1 71 81.7
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.1e-28 126.7 69 82.6
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.1e-28 126.7 69 82.6
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 7.1e-28 126.7 69 82.6
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 7.1e-28 126.7 72 81.9
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 9.3e-28 126.3 71 77.5
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 9.3e-28 126.3 72 80.6
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 9.3e-28 126.3 72 80.6
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.2e-27 125.9 71 80.3
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.2e-27 125.9 72 83.3
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 1.2e-27 125.9 72 83.3
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.2e-27 125.9 72 80.6
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.6e-27 125.6 72 80.6
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.6e-27 125.6 72 80.6
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 1.6e-27 125.6 70 84.3
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.1e-27 125.2 71 78.9
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.1e-27 125.2 71 78.9
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 2.1e-27 125.2 72 80.6
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.1e-27 125.2 71 80.3
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.1e-27 125.2 71 80.3
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 2.1e-27 125.2 72 79.2
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 2.7e-27 124.8 72 80.6
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.7e-27 124.8 71 80.3
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 3.5e-27 124.4 66 84.8
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 4.6e-27 124.0 70 78.6
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 4.6e-27 124.0 72 81.9
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 6.0e-27 123.6 70 84.3
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.0e-27 123.6 71 78.9
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 6.0e-27 123.6 72 80.6
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.9e-27 123.2 73 80.8
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 7.9e-27 123.2 71 77.5
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.0e-26 122.9 72 77.8
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 1.0e-26 122.9 71 78.9
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.0e-26 122.9 69 76.8
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.3e-26 121.7 69 81.2
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 5.1e-26 120.6 71 78.9
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 6.7e-26 120.2 71 78.9
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 8.7e-26 119.8 71 76.1
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 8.7e-26 119.8 71 73.2
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.5e-25 119.0 71 77.5
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 1.5e-25 119.0 72 80.6
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 1.9e-25 118.6 71 77.5
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 1.9e-25 118.6 71 77.5
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 1.9e-25 118.6 71 77.5
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 1.9e-25 118.6 71 77.5
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.9e-25 118.6 72 79.2
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 3.3e-25 117.9 62 87.1
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 3.3e-25 117.9 71 76.1
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 3.3e-25 117.9 71 76.1
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.3e-25 117.9 66 81.8
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.3e-25 117.9 71 77.5
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.3e-25 117.9 71 76.1
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 4.3e-25 117.5 93 64.5
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 7.4e-25 116.7 72 77.8
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 9.6e-25 116.3 71 74.6
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 9.6e-25 116.3 69 76.8
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.1e-24 115.2 72 76.4
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.1e-24 115.2 91 64.8
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.1e-24 115.2 71 74.6
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.1e-24 115.2 99 57.6
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 3.7e-24 114.4 95 58.9
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 4.8e-24 114.0 72 77.8
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.1e-23 112.8 69 72.5
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 1.4e-23 112.5 101 59.4
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.4e-23 112.5 77 67.5
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 6.9e-23 110.2 71 70.4
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 3.4e-22 107.8 61 75.4
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 4.5e-22 107.5 62 75.8
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 5.8e-22 107.1 125 49.6
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 1.0e-21 106.3 64 75.0
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.0e-21 106.3 90 61.1
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 1.3e-21 105.9 71 67.6
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.3e-21 105.9 61 77.0
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.7e-21 105.5 71 64.8
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 1.7e-21 105.5 61 75.4
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.2e-21 105.1 66 74.2
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 2.2e-21 105.1 71 67.6
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 5.0e-21 104.0 61 75.4
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 5.0e-21 104.0 61 75.4
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 5.0e-21 104.0 61 75.4
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 6.5e-21 103.6 60 76.7
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 6.5e-21 103.6 61 75.4
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 6.5e-21 103.6 61 75.4
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 6.5e-21 103.6 60 76.7
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 6.5e-21 103.6 61 73.8
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 6.5e-21 103.6 60 76.7
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 6.5e-21 103.6 60 76.7
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 6.5e-21 103.6 60 76.7
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 6.5e-21 103.6 60 76.7
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 6.5e-21 103.6 66 74.2
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 6.5e-21 103.6 61 75.4
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.1e-20 102.8 56 83.9
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 1.4e-20 102.4 56 83.9
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 3.2e-20 101.3 57 77.2
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.2e-20 100.9 56 85.7
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 4.2e-20 100.9 81 61.7
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 9.3e-20 99.8 56 80.4
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.2e-19 99.4 56 78.6
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.2e-19 99.4 56 78.6
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 1.6e-19 99.0 56 83.9
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 2.7e-19 98.2 57 80.7
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 3.5e-19 97.8 68 69.1
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.5e-19 97.8 65 69.2
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 6.1e-19 97.1 74 63.5
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 6.1e-19 97.1 56 76.8
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 7.9e-19 96.7 56 82.1
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 7.9e-19 96.7 74 63.5
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.0e-18 96.3 58 72.4
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.3e-18 95.9 56 78.6
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 8.7e-18 93.2 66 60.6
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 1.9e-17 92.0 56 71.4
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 2.2e-16 88.6 56 73.2
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.3e-16 87.0 58 72.4
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 8.2e-16 86.7 56 69.6
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.1e-15 86.3 56 69.6
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.4e-15 85.1 56 66.1
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.5e-14 82.4 56 60.7
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 2.0e-14 82.0 63 60.3
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.0e-14 82.0 62 54.8
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.5e-14 80.9 65 52.3
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.7e-13 79.0 43 79.1
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 2.9e-13 78.2 56 62.5
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 6.5e-13 77.0 49 67.3
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-12 76.3 58 65.5
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.9e-12 75.5 55 63.6
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 2.5e-12 75.1 38 86.8
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 2.5e-12 75.1 58 60.3
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.5e-12 73.9 40 77.5
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 3.6e-11 71.2 45 77.8
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 3.9e-10 67.8 40 75.0
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.5e-09 65.1 32 84.4
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 1.1e-07 59.7 51 52.9
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 6.9e-07 57.0 40 65.0
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 2.6e-06 55.1 54 44.4


User provided reference genes

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