Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028699 Camellia sinensis var. sinensis HOM05D004163 ORTHO05D004882 3.7e-149 531.6 276 100.0
CSS0045261 Camellia sinensis var. sinensis HOM05D004163 ORTHO05D004882 2.4e-148 528.9 276 99.3
Actinidia30080 Actinidia chinensis HOM05D004163 ORTHO05D004882 1.5e-102 376.7 291 73.2
Actinidia37588 Actinidia chinensis HOM05D004163 ORTHO05D004882 1.5e-102 376.7 295 72.5
Dinv19207 Davidia involucrata HOM05D004163 ORTHO05D004882 1.9e-100 369.8 290 71.7
vmacro14756 Vaccinium macrocarpon HOM05D004163 ORTHO05D004882 1.5e-94 350.1 284 67.6
Lj2A1132G68 Lonicera japonica HOM05D004163 ORTHO05D004882 5.8e-94 348.2 282 69.1
Rhsim13G0044700 Rhododendron simsii HOM05D004163 ORTHO05D004882 1.7e-93 346.7 284 69.0
Nitab4.5_0006192g0030 Nicotiana tabacum HOM05D004163 ORTHO05D004882 1.4e-92 343.6 281 69.0
vmacro02754 Vaccinium macrocarpon HOM05D004163 ORTHO05D004882 1.2e-91 340.5 286 68.5
Potri.002G241700 Populus trichocarpa HOM05D004163 ORTHO05D004882 2.7e-91 339.3 286 67.8
Nitab4.5_0000045g0110 Nicotiana tabacum HOM05D004163 ORTHO05D004882 3.5e-91 339.0 281 68.3
Sopen09g024070 Solanum pennellii HOM05D004163 ORTHO05D004882 7.8e-91 337.8 274 67.5
PGSC0003DMG400017659 Solanum tuberosum HOM05D004163 ORTHO05D004882 2.3e-90 336.3 274 68.2
Solyc09g061310.3 Solanum lycopersicum HOM05D004163 ORTHO05D004882 6.6e-90 334.7 274 67.5
TWI18G0775 Tripterygium wilfordii HOM05D004163 ORTHO05D004882 8.6e-90 334.3 286 65.7
Migut.D00532 Erythranthe guttata HOM05D004163 ORTHO05D004882 1.1e-89 334.0 280 67.1
MD10G1165200 Malus domestica HOM05D004163 ORTHO05D004882 1.5e-89 333.6 281 65.8
SGA_v2.0_scaffold1G00744 Striga asiatica HOM05D004163 ORTHO05D004882 1.5e-89 333.6 284 67.6
Eucgr.K02173 Eucalyptus grandis HOM05D004163 ORTHO05D004882 3.3e-89 332.4 285 65.3
MSTRG.17551 Avicennia marina HOM05D004163 ORTHO05D004882 4.3e-89 332.0 291 64.9
PGR044G0385 Punica granatum HOM05D004163 ORTHO05D004882 5.6e-89 331.6 282 64.5
Sabra02G0184100 Salix brachista HOM05D004163 ORTHO05D004882 5.6e-89 331.6 291 65.3
Gohir.A11G137300 Gossypium hirsutum HOM05D004163 ORTHO05D004882 7.3e-89 331.3 285 67.7
QL09p054666 Quercus lobata HOM05D004163 ORTHO05D004882 2.1e-88 329.7 279 65.9
Gohir.A08G194200 Gossypium hirsutum HOM05D004163 ORTHO05D004882 2.8e-88 329.3 285 66.3
Gohir.D11G143700 Gossypium hirsutum HOM05D004163 ORTHO05D004882 2.8e-88 329.3 285 67.0
Ca_07522_v3 Cicer arietinum L. HOM05D004163 ORTHO05D004882 4.7e-88 328.6 291 65.3
Prupe.8G203600 Prunus persica HOM05D004163 ORTHO05D004882 6.2e-88 328.2 281 65.1
MD05G1176500 Malus domestica HOM05D004163 ORTHO05D004882 8.1e-88 327.8 281 64.4
Psat3g145080 Pisum sativum HOM05D004163 ORTHO05D004882 8.1e-88 327.8 282 64.2
Gohir.D08G212000 Gossypium hirsutum HOM05D004163 ORTHO05D004882 1.1e-87 327.4 285 66.0
CANSAT01G0846 Cannabis sativa HOM05D004163 ORTHO05D004882 1.8e-87 326.6 283 66.4
Gorai.004G225400 Gossypium raimondii HOM05D004163 ORTHO05D004882 1.8e-87 326.6 285 65.6
Hma1.2p1_0970F.1_g242660 Hydrangea macrophylla HOM05D004163 ORTHO05D004882 1.8e-87 326.6 284 67.6
GSVIVG01028648001 Vitis vinifera HOM05D004163 ORTHO05D004882 1.8e-87 326.6 281 64.8
CAN.G154.3 Capsicum annuum HOM05D004163 ORTHO05D004882 2.4e-87 326.2 285 65.6
RcHm_v2.0_Chr6g0284951 Rosa chinensis HOM05D004163 ORTHO05D004882 2.4e-87 326.2 281 64.4
Atru.chr5.2002 Acer truncatum HOM05D004163 ORTHO05D004882 4.0e-87 325.5 291 63.6
Manes.12G047002 Manihot esculenta HOM05D004163 ORTHO05D004882 6.8e-87 324.7 286 65.0
Medtr7g058510 Medicago truncatula HOM05D004163 ORTHO05D004882 6.8e-87 324.7 289 62.6
Hund05534 Selenicereus undatus HOM05D004163 ORTHO05D004882 8.9e-87 324.3 283 65.4
Hund05538 Selenicereus undatus HOM05D004163 ORTHO05D004882 8.9e-87 324.3 283 65.4
TAR633G1583 Trochodendron aralioides HOM05D004163 ORTHO05D004882 1.2e-86 323.9 291 63.9
CiPaw.03G150300 Carya illinoinensis HOM05D004163 ORTHO05D004882 1.5e-86 323.6 290 63.8
CiPaw.04G105700 Carya illinoinensis HOM05D004163 ORTHO05D004882 1.5e-86 323.6 289 63.0
FvH4_4g33290 Fragaria vesca HOM05D004163 ORTHO05D004882 1.5e-86 323.6 281 64.8
FAN15G0391 Fragaria x ananassa HOM05D004163 ORTHO05D004882 1.5e-86 323.6 286 63.6
Gorai.007G153900 Gossypium raimondii HOM05D004163 ORTHO05D004882 2.0e-86 323.2 285 66.0
Manes.13G045400 Manihot esculenta HOM05D004163 ORTHO05D004882 2.0e-86 323.2 288 63.5
Thecc.01G226700 Theobroma cacao HOM05D004163 ORTHO05D004882 2.0e-86 323.2 283 66.8
Lj1g0012524 Lotus japonicus HOM05D004163 ORTHO05D004882 2.6e-86 322.8 283 63.6
TPR.G9029 Trifolium pratense HOM05D004163 ORTHO05D004882 2.6e-86 322.8 285 63.9
Cc01_g17110 Coffea canephora HOM05D004163 ORTHO05D004882 4.4e-86 322.0 296 63.2
Nn1g07844 Nelumbo nucifera HOM05D004163 ORTHO05D004882 5.8e-86 321.6 287 64.5
TWI36G1488 Tripterygium wilfordii HOM05D004163 ORTHO05D004882 5.8e-86 321.6 287 63.1
Cpa.g.sc8.162 Carica papaya HOM05D004163 ORTHO05D004882 7.6e-86 321.2 282 66.0
COL.COLO4_08179 Corchorus olitorius HOM05D004163 ORTHO05D004882 1.3e-85 320.5 285 64.2
Nn3g19955 Nelumbo nucifera HOM05D004163 ORTHO05D004882 2.2e-85 319.7 286 64.0
MSTRG.21422 Avicennia marina HOM05D004163 ORTHO05D004882 3.8e-85 318.9 291 62.9
Lalb_Chr01g0022371 Lupinus albus HOM05D004163 ORTHO05D004882 1.4e-84 317.0 282 63.5
FAN27G1937 Fragaria x ananassa HOM05D004163 ORTHO05D004882 1.9e-84 316.6 279 63.4
Aqoxy2G03890 Aquilegia oxysepala HOM05D004163 ORTHO05D004882 2.4e-84 316.2 280 64.3
Duzib133G0118 Durio zibethinus HOM05D004163 ORTHO05D004882 3.2e-84 315.8 282 63.1
CDE02G0060 Ceratophyllum demersum HOM05D004163 ORTHO05D004882 9.2e-84 314.3 277 62.1
Glyma.08G354700 Glycine max HOM05D004163 ORTHO05D004882 9.2e-84 314.3 279 64.2
Lalb_Chr03g0041791 Lupinus albus HOM05D004163 ORTHO05D004882 9.2e-84 314.3 282 61.7
Ciclev10021450m.g Citrus clementina HOM05D004163 ORTHO05D004882 1.2e-83 313.9 291 60.8
HanXRQChr10g0279771 Helianthus annuus HOM05D004163 ORTHO05D004882 1.6e-83 313.5 282 63.5
Peaxi162Scf00107g01625 Petunia axillaris HOM05D004163 ORTHO05D004882 2.1e-83 313.2 299 61.5
VMungo1383G2575 Vigna mungo HOM05D004163 ORTHO05D004882 2.1e-83 313.2 283 61.8
arahy.Tifrunner.gnm1.ann1.IH4GAK Arachis hypogaea HOM05D004163 ORTHO05D004882 3.5e-83 312.4 275 62.9
Phvul.008G125200 Phaseolus vulgaris HOM05D004163 ORTHO05D004882 3.5e-83 312.4 283 61.5
arahy.Tifrunner.gnm1.ann1.PP5Q2Q Arachis hypogaea HOM05D004163 ORTHO05D004882 7.8e-83 311.2 280 61.8
HanXRQChr15g0468291 Helianthus annuus HOM05D004163 ORTHO05D004882 1.3e-82 310.5 282 64.2
MBI10_g18940_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.7e-82 310.1 295 61.4
PSO832G2991 Papaver somniferum HOM05D004163 ORTHO05D004882 2.3e-82 309.7 278 63.3
ECA247G0816 Erigeron canadensis HOM05D004163 ORTHO05D004882 3.0e-82 309.3 282 63.1
ClCG09G009070 Citrullus lanatus HOM05D004163 ORTHO05D004882 6.6e-82 308.1 282 62.4
PSO339G4819 Papaver somniferum HOM05D004163 ORTHO05D004882 6.6e-82 308.1 278 62.9
PSO339G2763 Papaver somniferum HOM05D004163 ORTHO05D004882 8.7e-82 307.8 278 62.9
PSO675G2819 Papaver somniferum HOM05D004163 ORTHO05D004882 1.5e-81 307.0 274 63.5
CsaV3_7G025890 Cucumis sativus L. HOM05D004163 ORTHO05D004882 2.5e-81 306.2 282 62.1
THA.LOC104822505 Tarenaya hassleriana HOM05D004163 ORTHO05D004882 2.5e-81 306.2 288 60.4
Glyma.18G170900 Glycine max HOM05D004163 ORTHO05D004882 4.3e-81 305.4 278 62.9
AUR62008905 Chenopodium quinoa HOM05D004163 ORTHO05D004882 7.3e-81 304.7 296 58.8
DCAR_012637 Daucus carota HOM05D004163 ORTHO05D004882 4.7e-80 302.0 282 60.6
BcaC05g29756 Brassica carinata HOM05D004163 ORTHO05D004882 1.8e-79 300.1 283 60.1
Aa31LG5G17650 Aethionema arabicum HOM05D004163 ORTHO05D004882 3.1e-79 299.3 279 58.4
Aa31sc164G40 Aethionema arabicum HOM05D004163 ORTHO05D004882 1.2e-78 297.4 284 59.2
ATR0736G127 Amborella trichopoda HOM05D004163 ORTHO05D004882 4.4e-78 295.4 291 59.8
Sed0020546 Sechium edule HOM05D004163 ORTHO05D004882 5.8e-78 295.0 282 57.8
BraA05t22837Z Brassica rapa HOM05D001545 ORTHO05D001600 7.6e-78 294.7 283 59.0
BolC5t34677H Brassica oleracea HOM05D001545 ORTHO05D001600 9.9e-78 294.3 279 57.3
C05p60290 Brassica napus HOM05D001545 ORTHO05D001600 2.2e-77 293.1 279 57.3
BcaC05g29838 Brassica carinata HOM05D004163 ORTHO05D004882 2.9e-77 292.7 279 57.0
unitig_22.g6322 Utricularia gibba HOM05D004163 ORTHO05D004882 3.8e-77 292.4 277 59.9
DCAR_000532 Daucus carota HOM05D004163 ORTHO05D004882 1.1e-76 290.8 283 58.7
Sed0004920 Sechium edule HOM05D004163 ORTHO05D004882 1.1e-76 290.8 282 58.2
AUR62031805 Chenopodium quinoa HOM05D004163 ORTHO05D004882 4.2e-76 288.9 298 56.7
AT3G07090 Arabidopsis thaliana HOM05D004163 ORTHO05D004882 1.2e-75 287.3 283 55.8
AL3G18320 Arabidopsis lyrata HOM05D004163 ORTHO05D004882 2.1e-75 286.6 277 57.8
Sp3g06030 Schrenkiella parvula HOM05D004163 ORTHO05D004882 2.1e-75 286.6 283 56.9
Thhalv10021308m.g Eutrema salsugineum HOM05D004163 ORTHO05D004882 2.7e-75 286.2 279 56.6
Zm00001eb258670 Zea mays HOM05D004163 ORTHO05D004882 2.7e-75 286.2 282 61.0
BcaB04g21311 Brassica carinata HOM05D004163 ORTHO05D004882 3.5e-75 285.8 286 55.9
BNapus_Darmor_BZH_scaffold_109p00240 Brassica napus HOM05D001545 ORTHO05D001600 4.6e-75 285.4 280 55.7
A05p41110 Brassica napus HOM05D004163 ORTHO05D004882 6.0e-75 285.0 276 58.7
Carub.0003s0660 Capsella rubella HOM05D004163 ORTHO05D004882 1.7e-74 283.5 277 56.7
BolC1t05569H Brassica oleracea HOM05D001545 ORTHO05D001600 2.3e-74 283.1 280 55.4
BcaC09g47939 Brassica carinata HOM05D004163 ORTHO05D004882 3.9e-74 282.3 279 55.6
Duzib138G0078 Durio zibethinus HOM05D004163 ORTHO05D004882 6.6e-74 281.6 258 62.4
HPP92_008969 Vanilla planifolia HOM05D004163 ORTHO05D004882 1.6e-72 276.9 280 56.8
CARHR081680 Cardamine hirsuta HOM05D004163 ORTHO05D004882 8.1e-72 274.6 279 56.6
Os02g0814000 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 2.4e-71 273.1 282 58.2
Eucgr.K02178 Eucalyptus grandis HOM05D004163 ORTHO05D004882 1.5e-70 270.4 246 63.0
BraA01t04398Z Brassica rapa HOM05D004163 ORTHO05D004882 2.0e-70 270.0 277 54.2
TAR362G1211 Trochodendron aralioides HOM05D004163 ORTHO05D004882 3.4e-70 269.2 264 60.6
BcaB04g21309 Brassica carinata HOM05D004163 ORTHO05D004882 4.2e-68 262.3 286 53.1
ECA236G3105 Erigeron canadensis HOM05D004163 ORTHO05D004882 4.2e-68 262.3 279 53.0
HanXRQChr10g0287331 Helianthus annuus HOM05D004163 ORTHO05D004882 5.1e-66 255.4 275 52.7
Lsat_1_v5_gn_5_180180 Lactuca sativa HOM05D004163 ORTHO05D004882 1.1e-65 254.2 290 53.8
Os10g0472400 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 2.5e-65 253.1 282 52.5
AagrBONN_evm.TU.Sc2ySwM_117.3750 Anthoceros agrestis HOM05D004163 ORTHO05D004882 1.3e-64 250.8 283 53.0
CsaV3_3G029920 Cucumis sativus L. HOM05D004163 ORTHO05D004882 2.8e-64 249.6 295 51.9
HanXRQChr04g0110741 Helianthus annuus HOM05D004163 ORTHO05D004882 6.2e-64 248.4 278 52.2
Zm00001eb221910 Zea mays HOM05D004163 ORTHO05D004882 7.6e-62 241.5 296 52.0
Lsat_1_v5_gn_9_12141 Lactuca sativa HOM05D004163 ORTHO05D004882 9.9e-62 241.1 243 58.8
Mapoly0051s0047 Marchantia polymorpha HOM05D004163 ORTHO05D004882 1.1e-60 237.7 290 51.4
SMO146G0295 Selaginella moellendorffii HOM05D004163 ORTHO05D004882 4.6e-59 232.3 273 51.6
MD05G1176100 Malus domestica HOM05D004163 ORTHO05D004882 8.7e-58 228.0 160 71.2
Pp3c14_10250 Physcomitrium patens HOM05D004163 ORTHO05D004882 1.6e-56 223.8 305 48.2
MELO3C026664.2 Cucumis melo HOM05D004163 ORTHO05D004882 1.1e-52 211.1 259 49.4
MBI15_g26747_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.1e-52 211.1 246 54.1
Cpa.g.sc997.5 Carica papaya HOM05D004163 ORTHO05D004882 1.9e-52 210.3 298 44.6
ClCG07G001940 Citrullus lanatus HOM05D004163 ORTHO05D004882 5.7e-49 198.7 260 47.7
MBI16_g22910_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 7.4e-49 198.4 264 49.2
CBR_g567 Chara braunii HOM05D004163 ORTHO05D004882 1.1e-47 194.5 356 38.8
EL10Ac7g17826 Beta vulgaris HOM05D004163 ORTHO05D004882 9.0e-47 191.4 221 53.8
Lsat_1_v5_gn_8_90020 Lactuca sativa HOM05D004163 ORTHO05D004882 1.2e-46 191.0 245 47.3
MBI18_g31614_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.9e-44 183.7 206 54.9
MELO3C021008.2 Cucumis melo HOM05D004163 ORTHO05D004882 5.5e-44 182.2 216 53.2
Sc24g0003580 Simmondsia chinensis HOM05D004163 ORTHO05D004882 2.1e-43 180.3 196 56.6
MBI05_g47467_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 2.5e-41 173.3 234 48.7
PRCOL_00000114 Prasinoderma coloniale HOM05D004163 ORTHO05D004882 3.1e-39 166.4 153 54.2
CDE01G0537 Ceratophyllum demersum HOM05D004163 ORTHO05D004882 6.9e-39 165.2 262 42.0
MBI05_g08208_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.2e-38 164.5 243 46.1
Pp3c11_1330 Physcomitrium patens HOM05D004163 ORTHO05D004882 1.5e-38 164.1 184 48.4
MBI05_g47552_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 3.2e-36 156.4 247 43.7
MCO11G711 Micromonas commoda HOM05D004163 ORTHO05D004882 2.1e-35 153.7 132 53.8
C07p12700 Brassica napus HOM05D004163 ORTHO05D004882 3.1e-31 139.8 177 48.6
BcaC06g35635 Brassica carinata HOM05D004163 ORTHO05D004882 7.7e-30 135.2 227 40.5
FvH4_2g19170 Fragaria vesca HOM05D004163 ORTHO05D004882 6.5e-29 132.1 221 41.6
Cre12.g555850 Chlamydomonas reinhardtii HOM05D004163 ORTHO05D004882 1.9e-28 130.6 149 43.0
SHI28736 Sapria himalayana HOM05D004163 ORTHO05D004882 1.2e-27 127.9 114 57.9
C07p01970 Brassica napus HOM05D004163 ORTHO05D004882 2.1e-27 127.1 177 45.8
Haze_24789 Corylus avellana HOM05D004163 ORTHO05D004882 1.8e-26 124.0 154 53.2
Os02g0788133 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 1.0e-21 108.2 67 74.6
SMO173G0033 Selaginella moellendorffii HOM05D004163 ORTHO05D004882 6.5e-21 105.5 92 55.4
C07p01630 Brassica napus HOM05D004163 ORTHO05D004882 3.2e-20 103.2 190 43.2
Peaxi162Scf00517g00519 Petunia axillaris HOM05D004163 ORTHO05D004882 3.3e-17 93.2 155 45.8
Cre16.g662450 Chlamydomonas reinhardtii HOM05D004163 ORTHO05D004882 1.4e-15 87.8 155 31.0
BcaC06g36633 Brassica carinata HOM05D004163 ORTHO05D004882 3.1e-15 86.7 144 45.1
Peaxi162Scf00107g01626 Petunia axillaris HOM05D004163 ORTHO05D004882 3.1e-15 86.7 138 45.7
Hma1.2p1_0812F.1_g222380 Hydrangea macrophylla HOM05D004163 ORTHO05D004882 3.5e-14 83.2 133 47.4
C07p01620 Brassica napus HOM05D004163 ORTHO05D004882 2.2e-13 80.5 48 66.7
BolC7t40606H Brassica oleracea HOM05D004163 ORTHO05D004882 1.5e-12 77.8 139 41.0
Lsat_1_v5_gn_9_120120 Lactuca sativa HOM05D004163 ORTHO05D004882 7.2e-12 75.5 58 65.5
Cfa025778 Carpinus fangiana HOM05D004163 ORTHO05D004882 2.0e-09 67.4 130 35.4
MSTRG.18388 Avicennia marina HOM05D004163 ORTHO05D004882 2.6e-09 67.0 36 83.3
SHI28738 Sapria himalayana HOM05D004163 ORTHO05D004882 5.4e-07 59.3 164 36.0
Lalb_Chr09g0329921 Lupinus albus HOM05D000481 ORTHO05D000471 9.1e-07 58.5 135 31.9
Lsat_1_v5_gn_9_120100 Lactuca sativa HOM05D004163 ORTHO05D004882 2.0e-06 57.4 39 66.7
VMungo0251G2492 Vigna mungo HOM05D000481 ORTHO05D000471 2.7e-06 57.0 133 32.3
Gohir.D13G188400 Gossypium hirsutum HOM05D000481 ORTHO05D000471 3.5e-06 56.6 118 34.7
Lalb_Chr05g0221061 Lupinus albus HOM05D000481 ORTHO05D000471 3.5e-06 56.6 169 29.6
Peaxi162Scf00444g00120 Petunia axillaris HOM05D000481 ORTHO05D003804 4.5e-06 56.2 134 29.9
Migut.E01829 Erythranthe guttata HOM05D000481 ORTHO05D000471 5.9e-06 55.8 129 34.1
Medtr4g100500 Medicago truncatula HOM05D000481 ORTHO05D000471 5.9e-06 55.8 138 31.2
Lj4g0020875 Lotus japonicus HOM05D000481 ORTHO05D000471 7.7e-06 55.5 176 27.8
Medtr5g013040 Medicago truncatula HOM05D000481 ORTHO05D000471 7.7e-06 55.5 127 33.9
Psat4g073600 Pisum sativum HOM05D000481 ORTHO05D000471 7.7e-06 55.5 128 33.6


User provided reference genes

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