Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 2.0e-58 228.8 107 100.0
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 7.3e-29 130.6 88 69.3
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 9.6e-29 130.2 88 70.5
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.4e-27 125.6 86 66.3
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 4.0e-27 124.8 88 63.6
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 1.2e-26 123.2 83 68.7
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 2.0e-26 122.5 83 65.1
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 2.6e-26 122.1 97 59.8
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 1.7e-25 119.4 88 63.6
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 1.1e-24 116.7 83 62.7
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 9.3e-24 113.6 83 61.4
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 9.3e-24 113.6 83 62.7
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 9.3e-24 113.6 88 58.0
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 1.2e-23 113.2 91 59.3
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 2.7e-23 112.1 83 61.4
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 4.6e-23 111.3 83 59.0
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 6.0e-23 110.9 83 60.2
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 7.9e-23 110.5 85 62.4
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 1.0e-22 110.2 85 62.4
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 1.0e-22 110.2 83 62.7
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 1.3e-22 109.8 88 55.7
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 2.3e-22 109.0 84 58.3
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 3.0e-22 108.6 83 60.2
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 8.7e-22 107.1 83 53.0
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 1.5e-21 106.3 82 63.4
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 1.5e-21 106.3 82 53.7
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 1.9e-21 105.9 88 53.4
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 2.5e-21 105.5 83 55.4
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 2.5e-21 105.5 83 59.0
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 2.5e-21 105.5 87 57.5
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 3.3e-21 105.1 87 56.3
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 3.3e-21 105.1 88 55.7
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 3.3e-21 105.1 84 56.0
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 3.3e-21 105.1 84 56.0
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 3.3e-21 105.1 84 56.0
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 3.3e-21 105.1 83 61.4
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 3.7e-20 101.7 88 51.1
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 4.8e-20 101.3 87 55.2
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 6.2e-20 100.9 84 56.0
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 6.2e-20 100.9 83 55.4
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 1.1e-19 100.1 83 53.0
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 1.4e-19 99.8 88 53.4
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 1.8e-19 99.4 83 50.6
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.8e-19 99.4 88 53.4
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 2.4e-19 99.0 87 52.9
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 3.1e-19 98.6 87 51.7
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 9.0e-19 97.1 87 54.0
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 1.2e-18 96.7 87 50.6
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.5e-18 96.3 88 51.1
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 1.5e-18 96.3 87 52.9
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 3.4e-18 95.1 83 53.0
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 4.5e-18 94.7 87 50.6
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 7.6e-18 94.0 88 51.1
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 9.9e-18 93.6 87 48.3
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 9.9e-18 93.6 79 54.4
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 9.9e-18 93.6 92 48.9
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 1.3e-17 93.2 88 51.1
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 1.3e-17 93.2 70 60.0
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 2.2e-17 92.4 87 49.4
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 2.9e-17 92.0 88 48.9
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 3.8e-17 91.7 87 47.1
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 3.8e-17 91.7 87 47.1
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 4.9e-17 91.3 91 47.3
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 4.9e-17 91.3 92 50.0
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 4.9e-17 91.3 83 49.4
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 4.9e-17 91.3 87 49.4
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 4.9e-17 91.3 79 51.9
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 1.4e-16 89.7 80 48.8
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 1.4e-16 89.7 81 48.1
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 2.4e-16 89.0 82 48.8
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 7.1e-16 87.4 71 57.7
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 7.1e-16 87.4 81 49.4
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 9.3e-16 87.0 81 48.1
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 1.2e-15 86.7 79 49.4
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.2e-15 86.7 81 46.9
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 2.1e-15 85.9 83 51.8
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.1e-15 85.9 82 46.3
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 2.1e-15 85.9 81 49.4
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 3.5e-15 85.1 88 46.6
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 3.5e-15 85.1 87 47.1
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 4.6e-15 84.7 88 46.6
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 6.0e-15 84.3 79 49.4
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 6.0e-15 84.3 79 49.4
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 6.0e-15 84.3 88 47.7
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 6.0e-15 84.3 88 47.7
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 1.0e-14 83.6 79 48.1
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.0e-14 83.6 79 48.1
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 1.0e-14 83.6 79 48.1
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.3e-14 83.2 82 47.6
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 1.8e-14 82.8 79 48.1
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 3.9e-14 81.6 88 43.2
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 1.1e-13 80.1 72 51.4
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 1.1e-13 80.1 72 51.4
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 1.1e-13 80.1 87 43.7
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 1.9e-13 79.3 82 42.7
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 2.5e-13 79.0 82 41.5
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 4.3e-13 78.2 81 43.2
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 4.3e-13 78.2 83 42.2
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 1.3e-12 76.6 72 48.6
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.6e-12 76.3 84 46.4
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 2.1e-12 75.9 93 41.9
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 1.2e-10 70.1 93 39.8
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 4.5e-10 68.2 86 38.4
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 4.5e-10 68.2 75 44.0
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 1.0e-09 67.0 81 40.7
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 1.7e-09 66.2 83 39.8
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 1.7e-09 66.2 86 38.4
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 2.3e-06 55.8 81 35.8
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 2.3e-06 55.8 36 63.9


User provided reference genes

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