Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028682 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D109265 4.6e-46 187.6 98 100.0
CSS0005835 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 1.1e-36 156.4 88 95.5
CSS0025856 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D110646 1.0e-21 106.7 103 61.2
CSS0036968 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 1.0e-21 106.7 100 63.0
CSS0022375 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D109211 1.8e-21 105.9 104 60.6
CSS0003257 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 3.0e-21 105.1 86 69.8
CSS0044659 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 1.3e-19 99.8 88 64.8
CSS0039170 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 7.2e-15 84.0 94 60.6
vmacro20816 Vaccinium macrocarpon HOM05D000291 ORTHO05D000879 4.0e-13 78.2 85 60.0
Potri.018G142800 Populus trichocarpa HOM05D000291 ORTHO05D000879 6.8e-13 77.4 58 72.4
Sabra18G0116600 Salix brachista HOM05D000291 ORTHO05D000879 2.0e-12 75.9 56 73.2
Dinv25439 Davidia involucrata HOM05D000291 ORTHO05D000879 5.7e-12 74.3 95 50.5
Glyma.13G100400 Glycine max HOM05D000291 ORTHO05D000879 1.7e-11 72.8 72 61.1
Potri.006G075800 Populus trichocarpa HOM05D000291 ORTHO05D000879 2.8e-11 72.0 56 69.6
Sabra06G0056500 Salix brachista HOM05D000291 ORTHO05D000879 2.8e-11 72.0 83 59.0
Actinidia01277 Actinidia chinensis HOM05D000291 ORTHO05D000879 4.8e-11 71.2 86 59.3
Phvul.003G141500 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 4.8e-11 71.2 61 70.5
GSVIVG01010864001 Vitis vinifera HOM05D000291 ORTHO05D000879 4.8e-11 71.2 77 58.4
Lj4g0023693 Lotus japonicus HOM05D000291 ORTHO05D000879 6.3e-11 70.9 55 72.7
Medtr2g037980 Medicago truncatula HOM05D000291 ORTHO05D000879 6.3e-11 70.9 54 72.2
Cpa.g.sc95.13 Carica papaya HOM05D000291 ORTHO05D000879 1.4e-10 69.7 88 55.7
VMungo1215G0077 Vigna mungo HOM05D000291 ORTHO05D000879 1.8e-10 69.3 53 75.5
Solyc12g017430.3 Solanum lycopersicum HOM05D000291 ORTHO05D000879 2.4e-10 68.9 62 59.7
Cfa013450 Carpinus fangiana HOM05D000291 ORTHO05D000879 4.1e-10 68.2 78 56.4
PGSC0003DMG400009667 Solanum tuberosum HOM05D000291 ORTHO05D000879 9.1e-10 67.0 92 46.7
Ca_02104_v3 Cicer arietinum L. HOM05D000291 ORTHO05D000879 1.6e-09 66.2 48 72.9
Nitab4.5_0000007g0370 Nicotiana tabacum HOM05D000291 ORTHO05D000879 1.6e-09 66.2 96 45.8
Duzib168G0006 Durio zibethinus HOM05D000291 ORTHO05D000879 2.0e-09 65.9 100 45.0
Thecc.09G185800 Theobroma cacao HOM05D000291 ORTHO05D000879 2.0e-09 65.9 90 48.9
TAR383G0754 Trochodendron aralioides HOM05D000291 ORTHO05D000879 2.0e-09 65.9 94 45.7
CAN.G67.5 Capsicum annuum HOM05D000291 ORTHO05D000879 3.5e-09 65.1 96 40.6
Haze_22017 Corylus avellana HOM05D000291 ORTHO05D000879 5.9e-09 64.3 82 53.7
Dinv41173 Davidia involucrata HOM05D000291 ORTHO05D000879 5.9e-09 64.3 86 50.0
CiPaw.07G196800 Carya illinoinensis HOM05D000291 ORTHO05D000879 7.7e-09 63.9 71 60.6
Hma1.2p1_1326F.1_g275810 Hydrangea macrophylla HOM05D000291 ORTHO05D000879 1.0e-08 63.5 71 57.7
ClCG11G011780 Citrullus lanatus HOM05D000291 ORTHO05D000879 1.3e-08 63.2 71 59.2
Glyma.17G059500 Glycine max HOM05D000291 ORTHO05D000879 2.2e-08 62.4 48 77.1
Psat1g145640 Pisum sativum HOM05D000291 ORTHO05D000879 3.8e-08 61.6 51 64.7
QL02p046816 Quercus lobata HOM05D000291 ORTHO05D000879 3.8e-08 61.6 81 54.3
Atru.chr7.758 Acer truncatum HOM05D000291 ORTHO05D000879 5.0e-08 61.2 75 52.0
Atru.chr7.780 Acer truncatum HOM05D000291 ORTHO05D000879 5.0e-08 61.2 75 52.0
Lalb_Chr13g0300021 Lupinus albus HOM05D000291 ORTHO05D000879 6.5e-08 60.8 52 69.2
TPR.G5434 Trifolium pratense HOM05D000291 ORTHO05D000879 8.5e-08 60.5 51 64.7
CSS0022651 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 1.1e-07 60.1 100 44.0
Ca_21253_v3 Cicer arietinum L. HOM05D000291 ORTHO05D000879 1.1e-07 60.1 46 71.7
Lalb_Chr11g0074781 Lupinus albus HOM05D000291 ORTHO05D000879 1.5e-07 59.7 62 59.7
Nitab4.5_0001995g0060 Nicotiana tabacum HOM05D000291 ORTHO05D000879 1.5e-07 59.7 95 41.1
Duzib150G0075 Durio zibethinus HOM05D000291 ORTHO05D000879 2.5e-07 58.9 91 50.5
Cc00_g20360 Coffea canephora HOM05D000291 ORTHO05D000879 3.2e-07 58.5 82 50.0
CsaV3_2G008710 Cucumis sativus L. HOM05D000291 ORTHO05D000879 3.2e-07 58.5 72 51.4
Psat4g013400 Pisum sativum HOM05D000291 ORTHO05D000879 3.2e-07 58.5 54 59.3
Gohir.A05G002400 Gossypium hirsutum HOM05D000291 ORTHO05D000879 4.2e-07 58.2 88 46.6
Medtr4g127440 Medicago truncatula HOM05D000291 ORTHO05D000879 7.2e-07 57.4 49 61.2
ATR0626G108 Amborella trichopoda HOM05D000291 ORTHO05D000879 9.4e-07 57.0 75 45.3
Gorai.009G002600 Gossypium raimondii HOM05D000291 ORTHO05D000879 9.4e-07 57.0 48 68.8
TWI63G0722 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 9.4e-07 57.0 86 50.0
Glyma.15G165800 Glycine max HOM05D000291 ORTHO05D000879 1.2e-06 56.6 38 73.7
Sed0015547 Sechium edule HOM05D000291 ORTHO05D000879 1.2e-06 56.6 77 51.9
COL.COLO4_07058 Corchorus olitorius HOM05D000291 ORTHO05D000879 1.6e-06 56.2 81 50.6
Lj6g0024154 Lotus japonicus HOM05D000291 ORTHO05D000879 1.6e-06 56.2 40 75.0
Eucgr.C02326 Eucalyptus grandis HOM05D000291 ORTHO05D000879 2.1e-06 55.8 36 77.8
TPR.G9000 Trifolium pratense HOM05D000291 ORTHO05D000879 2.1e-06 55.8 55 58.2
VMungo1309G2753 Vigna mungo HOM05D000291 ORTHO05D000879 2.7e-06 55.5 50 58.0
Peaxi162Scf00124g00044 Petunia axillaris HOM05D000291 ORTHO05D000879 3.6e-06 55.1 87 42.5
MD16G1249100 Malus domestica HOM05D000291 ORTHO05D000879 4.7e-06 54.7 39 79.5
Prupe.1G075800 Prunus persica HOM05D000291 ORTHO05D000879 4.7e-06 54.7 42 73.8
PGR044G0232 Punica granatum HOM05D000291 ORTHO05D000879 6.1e-06 54.3 49 67.3


User provided reference genes

Program Settings