Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028673 Camellia sinensis var. sinensis HOM05D002655 ORTHO05D002558 3.3e-164 581.6 292 100.0
CSS0048880 Camellia sinensis var. sinensis HOM05D002655 ORTHO05D002558 3.8e-144 515.0 300 89.0
CSS0020664 Camellia sinensis var. sinensis HOM05D002655 ORTHO05D002558 5.3e-138 494.6 280 89.6
Rhsim03G0147900 Rhododendron simsii HOM05D002655 ORTHO05D002558 7.7e-113 411.0 283 74.9
Dinv10575 Davidia involucrata HOM05D002655 ORTHO05D002558 6.7e-109 397.9 283 72.1
vmacro06940 Vaccinium macrocarpon HOM05D002655 ORTHO05D002558 2.0e-108 396.4 283 72.4
Cc02_g05900 Coffea canephora HOM05D002655 ORTHO05D002558 1.4e-93 347.1 283 62.9
TAR633G1667 Trochodendron aralioides HOM05D002655 ORTHO05D002558 4.0e-93 345.5 283 64.3
Haze_17293 Corylus avellana HOM05D002655 ORTHO05D002558 9.8e-92 340.9 284 62.0
GSVIVG01032739001 Vitis vinifera HOM05D002655 ORTHO05D002558 2.8e-91 339.3 284 61.6
Cfa001258 Carpinus fangiana HOM05D002655 ORTHO05D002558 6.3e-91 338.2 286 60.8
Thecc.10G009000 Theobroma cacao HOM05D002655 ORTHO05D002558 4.1e-90 335.5 280 62.1
Nitab4.5_0026398g0010 Nicotiana tabacum HOM05D002655 ORTHO05D002558 5.4e-90 335.1 282 60.6
QL08p063992 Quercus lobata HOM05D002655 ORTHO05D002558 7.0e-90 334.7 283 62.2
Ciclev10031321m.g Citrus clementina HOM05D002655 ORTHO05D002558 4.5e-89 332.0 281 59.8
MD01G1159800 Malus domestica HOM05D002655 ORTHO05D002558 2.2e-88 329.7 283 59.7
Prupe.2G257800 Prunus persica HOM05D002655 ORTHO05D002558 8.5e-88 327.8 283 59.4
Peaxi162Scf01149g00019 Petunia axillaris HOM05D002655 ORTHO05D002558 1.5e-87 327.0 291 59.8
Potri.010G183100 Populus trichocarpa HOM05D002655 ORTHO05D002558 2.1e-86 323.2 286 59.8
DCAR_027543 Daucus carota HOM05D002655 ORTHO05D002558 2.7e-86 322.8 289 58.8
Gorai.010G193800 Gossypium raimondii HOM05D002655 ORTHO05D002558 3.6e-86 322.4 280 60.7
Gohir.A06G160175 Gossypium hirsutum HOM05D002655 ORTHO05D002558 1.0e-85 320.9 280 60.7
Nitab4.5_0003402g0050 Nicotiana tabacum HOM05D002655 ORTHO05D002558 1.0e-85 320.9 269 60.6
CAN.G203.24 Capsicum annuum HOM05D002655 ORTHO05D002558 1.8e-85 320.1 281 57.7
COL.COLO4_25808 Corchorus olitorius HOM05D002655 ORTHO05D002558 1.8e-85 320.1 289 60.9
Nn2g11017 Nelumbo nucifera HOM05D002655 ORTHO05D002558 5.2e-85 318.5 279 59.5
Sabra10G0140400 Salix brachista HOM05D002655 ORTHO05D002558 5.2e-85 318.5 286 60.1
VMungo0647G0549 Vigna mungo HOM05D002655 ORTHO05D002558 8.8e-85 317.8 284 58.8
Gohir.D06G166200 Gossypium hirsutum HOM05D002655 ORTHO05D002558 1.2e-84 317.4 280 60.0
PGSC0003DMG400019944 Solanum tuberosum HOM05D002655 ORTHO05D002558 3.4e-84 315.8 286 57.7
Duzib106G0019 Durio zibethinus HOM05D002655 ORTHO05D002558 4.4e-84 315.5 281 58.0
Lalb_Chr10g0105341 Lupinus albus HOM05D002655 ORTHO05D002558 7.5e-84 314.7 283 59.0
Glyma.02G261000 Glycine max HOM05D002655 ORTHO05D002558 1.3e-83 313.9 284 58.1
FvH4_7g25370 Fragaria vesca HOM05D002655 ORTHO05D002558 2.8e-83 312.8 287 59.2
Phvul.008G219800 Phaseolus vulgaris HOM05D002655 ORTHO05D002558 3.7e-83 312.4 284 58.1
FAN06G3888 Fragaria x ananassa HOM05D002655 ORTHO05D002558 4.9e-83 312.0 287 59.2
RcHm_v2.0_Chr1g0371291 Rosa chinensis HOM05D002655 ORTHO05D002558 1.1e-82 310.8 287 59.2
FAN03G1220 Fragaria x ananassa HOM05D002655 ORTHO05D002558 1.4e-82 310.5 287 58.9
TPR.G30443 Trifolium pratense HOM05D002655 ORTHO05D002558 3.1e-82 309.3 283 57.2
Manes.10G007400 Manihot esculenta HOM05D002655 ORTHO05D002558 2.0e-81 306.6 284 56.3
Psat2g029840 Pisum sativum HOM05D002655 ORTHO05D002558 2.0e-81 306.6 285 56.5
Medtr5g083500 Medicago truncatula HOM05D002655 ORTHO05D002558 5.9e-81 305.1 280 56.4
Solyc10g018120.2 Solanum lycopersicum HOM05D002655 ORTHO05D002558 1.3e-80 303.9 286 55.6
Aqoxy1G01282 Aquilegia oxysepala HOM05D002655 ORTHO05D002558 8.6e-80 301.2 289 55.0
AUR62012318 Chenopodium quinoa HOM05D002655 ORTHO05D002558 1.1e-79 300.8 277 56.3
Migut.F00622 Erythranthe guttata HOM05D002655 ORTHO05D002558 1.9e-79 300.1 298 56.4
HanXRQChr14g0458771 Helianthus annuus HOM05D002655 ORTHO05D002558 2.5e-79 299.7 293 54.3
TWI59G0767 Tripterygium wilfordii HOM05D002655 ORTHO05D002558 2.5e-79 299.7 287 55.4
arahy.Tifrunner.gnm1.ann1.492DM0 Arachis hypogaea HOM05D002655 ORTHO05D002558 9.5e-79 297.7 294 55.1
Sed0024814 Sechium edule HOM05D002655 ORTHO05D002558 9.5e-79 297.7 281 55.2
MSTRG.27297 Avicennia marina HOM05D002655 ORTHO05D002558 1.2e-78 297.4 302 54.6
Nn2g13265 Nelumbo nucifera HOM05D002655 ORTHO05D002558 1.2e-78 297.4 278 55.4
SalBow3G2865 Salvia bowleyana HOM05D002655 ORTHO05D002558 1.2e-78 297.4 294 55.4
EL10Ac2g04910 Beta vulgaris HOM05D002655 ORTHO05D002558 1.6e-78 297.0 279 56.6
LjContig00357g0012654 Lotus japonicus HOM05D002655 ORTHO05D002558 4.7e-78 295.4 286 54.2
arahy.Tifrunner.gnm1.ann1.JHLY2S Arachis hypogaea HOM05D002655 ORTHO05D002558 2.3e-77 293.1 297 54.2
CANSAT56G2388 Cannabis sativa HOM05D002655 ORTHO05D002558 3.0e-77 292.7 287 54.7
Lsat_1_v5_gn_2_125740 Lactuca sativa HOM05D002655 ORTHO05D002558 6.8e-77 291.6 285 55.1
HanXRQChr07g0203491 Helianthus annuus HOM05D002655 ORTHO05D002558 2.0e-76 290.0 288 54.2
MELO3C020095.2 Cucumis melo HOM05D002655 ORTHO05D002558 3.4e-76 289.3 285 52.3
TPR.G30920 Trifolium pratense HOM05D002655 ORTHO05D002558 1.7e-75 287.0 280 52.5
Sc11g0005430 Simmondsia chinensis HOM05D002655 ORTHO05D002558 2.2e-75 286.6 288 54.2
PGR044G1037 Punica granatum HOM05D002655 ORTHO05D002558 2.9e-75 286.2 298 51.0
TWI14G0122 Tripterygium wilfordii HOM05D002655 ORTHO05D002558 3.7e-75 285.8 285 53.3
MSTRG.8917 Avicennia marina HOM05D002655 ORTHO05D002558 4.9e-75 285.4 297 54.2
MELO3C020096.2 Cucumis melo HOM05D002655 ORTHO05D002558 1.4e-74 283.9 284 53.2
CsaV3_5G010640 Cucumis sativus L. HOM05D002655 ORTHO05D002558 4.1e-74 282.3 284 51.8
Lj6g0018045 Lotus japonicus HOM05D002655 ORTHO05D002558 5.4e-74 282.0 279 53.4
Medtr3g071950 Medicago truncatula HOM05D002655 ORTHO05D002558 7.0e-74 281.6 281 52.0
PSO339G6376 Papaver somniferum HOM05D002655 ORTHO05D002558 2.0e-73 280.0 285 53.0
CiPaw.01G302400 Carya illinoinensis HOM05D002655 ORTHO05D002558 3.5e-73 279.3 279 54.1
PSO384G4829 Papaver somniferum HOM05D002655 ORTHO05D002558 5.9e-73 278.5 280 53.2
CsaV3_5G010650 Cucumis sativus L. HOM05D002655 ORTHO05D002558 1.0e-72 277.7 284 51.8
Aqoxy2G00775 Aquilegia oxysepala HOM05D002655 ORTHO05D002558 1.3e-72 277.3 288 53.1
ClCG07G004720 Citrullus lanatus HOM05D002655 ORTHO05D002558 1.3e-72 277.3 280 52.5
Psat5g132160 Pisum sativum HOM05D002655 ORTHO05D002558 1.7e-72 276.9 280 51.4
BcaC02g12155 Brassica carinata HOM05D002655 ORTHO05D002558 8.6e-72 274.6 280 50.4
C04p07000 Brassica napus HOM05D002655 ORTHO05D002558 8.6e-72 274.6 280 50.4
BolC4t22321H Brassica oleracea HOM05D002655 ORTHO05D002558 8.6e-72 274.6 280 50.4
Lalb_Chr08g0231431 Lupinus albus HOM05D002655 ORTHO05D002558 8.6e-72 274.6 281 50.5
Eucgr.J00165 Eucalyptus grandis HOM05D002655 ORTHO05D002558 1.1e-71 274.2 290 50.3
BcaB02g09025 Brassica carinata HOM05D002655 ORTHO05D002558 2.5e-71 273.1 280 50.0
AL4G38210 Arabidopsis lyrata HOM05D002655 ORTHO05D002558 7.3e-71 271.6 280 48.9
Thhalv10016559m.g Eutrema salsugineum HOM05D002655 ORTHO05D002558 9.5e-71 271.2 289 50.2
THA.LOC104810129 Tarenaya hassleriana HOM05D002655 ORTHO05D002558 2.1e-70 270.0 291 50.2
Phvul.001G246900 Phaseolus vulgaris HOM05D002655 ORTHO05D002558 3.6e-70 269.2 292 50.3
CARHR135470 Cardamine hirsuta HOM05D002655 ORTHO05D002558 1.0e-69 267.7 289 48.4
Sp4g22710 Schrenkiella parvula HOM05D002655 ORTHO05D002558 1.0e-69 267.7 289 49.5
BraA05t19571Z Brassica rapa HOM05D002655 ORTHO05D002558 1.4e-69 267.3 280 49.3
Carub.0004s2263 Capsella rubella HOM05D002655 ORTHO05D002558 3.1e-69 266.2 289 49.1
Aa31LG5G19190 Aethionema arabicum HOM05D002655 ORTHO05D002558 4.0e-69 265.8 293 48.5
Hund15873 Selenicereus undatus HOM05D002655 ORTHO05D002558 8.9e-69 264.6 287 49.1
Os01g0165100 Oryza sativa ssp. japonica HOM05D002655 ORTHO05D002558 2.0e-68 263.5 282 49.6
THA.LOC104799957 Tarenaya hassleriana HOM05D002655 ORTHO05D002558 2.6e-68 263.1 287 50.2
AT2G40390 Arabidopsis thaliana HOM05D002655 ORTHO05D002558 7.5e-68 261.5 280 48.2
AL8G41460 Arabidopsis lyrata HOM05D002655 ORTHO05D002558 2.2e-67 260.0 291 48.1
arahy.Tifrunner.gnm1.ann1.3X2JKH Arachis hypogaea HOM05D002655 ORTHO05D002558 2.2e-67 260.0 288 50.3
Oeu051648.1 Olea europaea HOM05D002655 ORTHO05D002558 4.9e-67 258.8 260 56.2
A05p06080 Brassica napus HOM05D002655 ORTHO05D002558 4.1e-66 255.8 279 48.0
BcaC01g02676 Brassica carinata HOM05D002655 ORTHO05D002558 9.2e-66 254.6 291 48.5
C03p62060 Brassica napus HOM05D002655 ORTHO05D002558 9.2e-66 254.6 291 48.5
BolC3t18467H Brassica oleracea HOM05D002655 ORTHO05D002558 9.2e-66 254.6 291 48.5
Sp2g27250 Schrenkiella parvula HOM05D002655 ORTHO05D002558 1.2e-65 254.2 290 48.3
VMungo1383G2715 Vigna mungo HOM05D002655 ORTHO05D002558 2.0e-65 253.4 281 48.0
BraA06t26030Z Brassica rapa HOM05D002655 ORTHO05D002558 6.0e-65 251.9 290 47.2
Lsat_1_v5_gn_2_125641 Lactuca sativa HOM05D002655 ORTHO05D002558 6.0e-65 251.9 285 47.7
BcaB02g09778 Brassica carinata HOM05D002655 ORTHO05D002558 2.3e-64 250.0 290 46.9
A06p30910 Brassica napus HOM05D002655 ORTHO05D002558 3.9e-64 249.2 290 46.9
AT5G64190 Arabidopsis thaliana HOM05D002655 ORTHO05D002558 8.6e-64 248.1 290 46.9
Carub.0008s2498 Capsella rubella HOM05D002655 ORTHO05D002558 1.5e-63 247.3 288 47.6
Thhalv10005630m.g Eutrema salsugineum HOM05D002655 ORTHO05D002558 1.5e-63 247.3 290 46.6
MBI15_g16138_MAGBIO Magnolia biondii HOM05D002655 ORTHO05D002558 2.0e-60 236.9 283 48.1
SGA_v2.0_scaffold60G20951 Striga asiatica HOM05D002655 ORTHO05D002558 1.6e-57 227.3 292 50.0
Aa31LG1G17710 Aethionema arabicum HOM05D002655 ORTHO05D002558 1.0e-56 224.6 301 42.9
HPP92_001129 Vanilla planifolia HOM05D002655 ORTHO05D002558 1.0e-56 224.6 263 48.7
arahy.Tifrunner.gnm1.ann1.YSF7P1 Arachis hypogaea HOM05D002655 ORTHO05D002558 1.3e-56 224.2 268 48.9
CiPaw.02G196500 Carya illinoinensis HOM05D002655 ORTHO05D002558 8.6e-56 221.5 268 48.9
unitig_37.g12463 Utricularia gibba HOM05D002655 ORTHO05D002558 1.1e-53 214.5 279 44.4
Sopen10g007160 Solanum pennellii HOM05D002655 ORTHO05D002558 4.3e-47 192.6 147 63.3
ATR0594G035 Amborella trichopoda HOM05D002655 ORTHO05D002558 2.8e-46 189.9 305 37.7
Os07g0231800 Oryza sativa ssp. japonica HOM05D002655 ORTHO05D002558 1.1e-45 188.0 286 40.6
Cpa.g.sc19.115 Carica papaya HOM05D002655 ORTHO05D002558 7.6e-44 181.8 120 70.0
Atru.chr12.115 Acer truncatum HOM05D002655 ORTHO05D002558 1.4e-42 177.6 175 56.6
Actinidia33900 Actinidia chinensis HOM05D002655 ORTHO05D002558 3.2e-42 176.4 106 76.4
Ah.10g036090 Amaranthus hybridus HOM05D002655 ORTHO05D002558 3.2e-42 176.4 145 60.0
AUR62022958 Chenopodium quinoa HOM05D002655 ORTHO05D002558 1.1e-37 161.4 126 63.5
ECA238G4387 Erigeron canadensis HOM05D002655 ORTHO05D002558 1.8e-37 160.6 112 64.3
Lj8A60T46 Lonicera japonica HOM05D002655 ORTHO05D002558 4.0e-37 159.5 108 68.5
Glyma.11G233600 Glycine max HOM05D002655 ORTHO05D002558 4.9e-35 152.5 112 58.0
SEGI_02192 Sequoiadendron giganteum HOM05D002655 ORTHO05D002558 9.3e-34 148.3 301 33.6
SEGI_18342 Sequoiadendron giganteum HOM05D002655 ORTHO05D002558 2.1e-33 147.1 301 34.6
Actinidia29732 Actinidia chinensis HOM05D002655 ORTHO05D002558 1.0e-32 144.8 90 76.7
Ca_15166_v3 Cicer arietinum L. HOM05D002655 ORTHO05D002558 1.0e-24 118.2 89 61.8
PGSC0003DMG400001288 Solanum tuberosum HOM05D002655 ORTHO05D002558 3.3e-23 113.2 79 69.6
Actinidia33896 Actinidia chinensis HOM05D002655 ORTHO05D002558 1.3e-14 84.7 52 75.0
Cpa.g.sc106.111 Carica papaya HOM05D002655 ORTHO05D002558 2.6e-12 77.0 314 24.5
HanXRQChr03g0068761 Helianthus annuus HOM05D002655 ORTHO05D002558 5.9e-12 75.9 302 27.2
Lsat_1_v5_gn_9_112601 Lactuca sativa HOM05D002655 ORTHO05D002558 7.6e-12 75.5 308 26.0
SEGI_04032 Sequoiadendron giganteum HOM05D002655 ORTHO05D002558 1.7e-11 74.3 305 24.9
TWI31G0106 Tripterygium wilfordii HOM05D002655 ORTHO05D002558 2.2e-11 73.9 318 26.4
Cfa004602 Carpinus fangiana HOM05D002655 ORTHO05D002558 5.0e-11 72.8 309 24.3
Manes.17G116700 Manihot esculenta HOM05D002655 ORTHO05D002558 5.0e-11 72.8 316 24.4
Psat6g217240 Pisum sativum HOM05D002655 ORTHO05D002558 8.5e-11 72.0 308 22.7
MBI16_g02801_MAGBIO Magnolia biondii HOM05D002655 ORTHO05D002558 1.4e-10 71.2 316 26.3
Sopen00g012980 Solanum pennellii HOM05D002655 ORTHO05D002558 2.5e-10 70.5 52 65.4
Atru.chr12.116 Acer truncatum HOM05D002655 ORTHO05D002558 3.2e-10 70.1 51 54.9
Eucgr.L00953 Eucalyptus grandis HOM05D002655 ORTHO05D002558 3.2e-10 70.1 181 28.7
Eucgr.G01325 Eucalyptus grandis HOM05D002655 ORTHO05D002558 9.3e-10 68.6 181 28.7
Glyma.18G023400 Glycine max HOM05D002655 ORTHO05D002558 1.6e-09 67.8 53 50.9
Potri.009G094100 Populus trichocarpa HOM05D002655 ORTHO05D002558 1.6e-09 67.8 313 23.6
Haze_10198 Corylus avellana HOM05D002655 ORTHO05D002558 2.7e-09 67.0 311 26.0
Phvul.007G041300 Phaseolus vulgaris HOM05D002655 ORTHO05D002558 1.3e-08 64.7 309 23.0
Sabra09G0072400 Salix brachista HOM05D002655 ORTHO05D002558 1.3e-08 64.7 312 22.8
Lalb_Chr06g0165401 Lupinus albus HOM05D002655 ORTHO05D002558 2.3e-08 63.9 316 24.4
QL11p032810 Quercus lobata HOM05D002655 ORTHO05D002558 2.3e-08 63.9 323 25.1
AUR62039061 Chenopodium quinoa HOM05D002655 ORTHO05D002558 3.9e-08 63.2 318 26.4
THA.LOC104819551 Tarenaya hassleriana HOM05D002655 ORTHO05D002558 5.1e-08 62.8 319 22.6
Sed0006288 Sechium edule HOM05D002655 ORTHO05D002558 1.1e-07 61.6 317 23.7
Duzib052G0908 Durio zibethinus HOM05D002655 ORTHO05D002558 1.5e-07 61.2 322 23.6
Glyma.20G130300 Glycine max HOM05D002655 ORTHO05D002558 1.5e-07 61.2 176 30.1
PGR042G3535 Punica granatum HOM05D002655 ORTHO05D002558 1.5e-07 61.2 185 29.7
Cc02_g19370 Coffea canephora HOM05D002655 ORTHO05D002558 2.5e-07 60.5 179 29.1
Prupe.8G137000 Prunus persica HOM05D002655 ORTHO05D002558 3.3e-07 60.1 280 26.4
Glyma.10G261000 Glycine max HOM05D002655 ORTHO05D002558 7.4e-07 58.9 174 28.2
FvH4_2g07860 Fragaria vesca HOM05D002655 ORTHO05D002558 1.3e-06 58.2 318 22.6
HPP92_009550 Vanilla planifolia HOM05D002655 ORTHO05D002558 1.6e-06 57.8 281 24.6
COL.COLO4_32575 Corchorus olitorius HOM05D002655 ORTHO05D002558 2.2e-06 57.4 177 28.2
Atru.chr5.2469 Acer truncatum HOM05D002655 ORTHO05D002558 3.7e-06 56.6 176 27.8
Gohir.D02G206848 Gossypium hirsutum HOM05D002655 ORTHO05D002558 3.7e-06 56.6 315 24.4
RcHm_v2.0_Chr6g0262281 Rosa chinensis HOM05D002655 ORTHO05D002558 3.7e-06 56.6 323 24.1
FAN24G1942 Fragaria x ananassa HOM05D002655 ORTHO05D002558 4.8e-06 56.2 318 22.3
SEGI_24844 Sequoiadendron giganteum HOM05D002655 ORTHO05D002558 4.8e-06 56.2 287 22.3
Ciclev10028186m.g Citrus clementina HOM05D002655 ORTHO05D002558 6.3e-06 55.8 317 24.3
FAN27G2566 Fragaria x ananassa HOM05D002655 ORTHO05D002558 8.2e-06 55.5 318 23.0
Gorai.005G234500 Gossypium raimondii HOM05D002655 ORTHO05D002558 8.2e-06 55.5 315 24.4


User provided reference genes

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