Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-104 383.3 186 100.0
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-99 365.2 194 93.8
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.3e-85 318.2 194 83.0
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.6e-85 317.8 194 83.0
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-83 312.0 194 82.0
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 4.0e-83 311.6 194 80.4
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 2.7e-79 298.9 194 76.8
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-77 293.5 194 75.3
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.5e-77 293.1 194 74.7
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.3e-77 292.0 194 74.7
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.3e-77 291.6 186 81.7
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 4.3e-77 291.6 194 75.3
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 4.3e-77 291.6 194 75.3
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 5.6e-77 291.2 194 74.7
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 9.6e-77 290.4 194 73.2
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 2.8e-76 288.9 194 73.7
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 2.8e-76 288.9 193 74.1
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 4.8e-76 288.1 194 74.2
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.1e-75 287.0 194 72.7
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 1.1e-75 287.0 194 72.7
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.4e-75 285.8 194 73.7
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 3.1e-75 285.4 194 73.7
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.0e-75 285.0 194 72.7
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 4.0e-75 285.0 194 72.7
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 4.0e-75 285.0 193 74.1
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 5.3e-75 284.6 193 71.5
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 6.9e-75 284.3 193 71.5
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 9.0e-75 283.9 193 74.1
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 9.0e-75 283.9 193 72.0
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.2e-74 283.5 192 72.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.5e-74 283.1 194 74.7
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 1.5e-74 283.1 194 72.7
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 2.6e-74 282.3 194 71.6
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 3.4e-74 282.0 194 73.2
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 5.8e-74 281.2 194 71.1
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 7.6e-74 280.8 194 74.2
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.0e-73 280.4 193 73.6
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.3e-73 280.0 193 72.0
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.7e-73 279.6 193 71.5
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.7e-73 279.6 194 73.7
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.2e-73 279.3 194 72.2
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.9e-73 278.9 194 72.2
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 3.8e-73 278.5 194 71.6
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 4.9e-73 278.1 194 72.2
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.9e-73 278.1 193 71.0
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 4.9e-73 278.1 195 72.3
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.5e-73 277.7 193 71.0
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.1e-72 276.9 193 70.5
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 1.9e-72 276.2 193 70.5
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 2.5e-72 275.8 193 71.0
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 5.5e-72 274.6 195 71.3
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.5e-72 274.6 195 71.3
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 5.5e-72 274.6 194 71.6
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 5.5e-72 274.6 194 69.6
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 5.5e-72 274.6 193 71.5
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 7.1e-72 274.2 192 71.9
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 9.3e-72 273.9 195 71.8
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.2e-71 273.5 193 69.4
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.6e-71 273.1 194 70.1
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.6e-71 273.1 195 71.8
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.7e-71 272.3 195 71.3
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 6.0e-71 271.2 193 70.5
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 6.0e-71 271.2 195 70.8
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 6.0e-71 271.2 191 70.2
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 6.0e-71 271.2 193 70.5
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 7.9e-71 270.8 193 69.4
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 7.9e-71 270.8 193 67.9
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.0e-70 270.4 193 68.9
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.0e-70 270.4 193 69.9
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 1.8e-70 269.6 194 70.1
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 3.9e-70 268.5 195 71.8
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 8.7e-70 267.3 193 67.9
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 1.5e-69 266.5 194 67.5
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.9e-69 266.2 194 71.1
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 7.4e-69 264.2 194 68.6
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 9.7e-69 263.8 194 67.0
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 1.3e-68 263.5 194 67.0
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.3e-68 263.5 194 70.1
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.6e-68 263.1 188 70.2
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 1.6e-68 263.1 194 66.5
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 3.7e-68 261.9 175 75.4
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 8.2e-68 260.8 195 70.3
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 8.2e-68 260.8 194 68.0
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 1.1e-67 260.4 194 66.0
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.1e-67 260.4 181 72.4
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.8e-67 259.6 194 66.0
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.8e-67 259.6 193 67.4
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.1e-67 258.5 196 67.3
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 9.0e-67 257.3 194 65.5
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.2e-66 256.9 194 68.0
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.5e-66 256.5 176 71.0
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.5e-66 256.5 194 68.0
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 2.0e-66 256.1 194 64.9
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.0e-66 256.1 196 66.8
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 4.5e-66 255.0 194 67.0
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 5.9e-66 254.6 194 64.9
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 7.7e-66 254.2 196 66.3
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.0e-65 253.8 194 67.0
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.3e-65 253.4 194 64.4
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.3e-65 253.4 192 65.1
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 1.7e-65 253.1 193 64.8
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 2.2e-65 252.7 195 65.1
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 2.2e-65 252.7 193 65.8
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 5.0e-65 251.5 194 66.0
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.1e-64 250.4 192 64.6
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 1.1e-64 250.4 193 65.3
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 2.5e-64 249.2 192 63.5
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.5e-64 249.2 194 67.0
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 3.2e-64 248.8 195 66.2
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 7.2e-64 247.7 196 65.3
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 9.4e-64 247.3 194 64.9
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 9.4e-64 247.3 194 65.5
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.6e-63 246.5 194 66.0
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.6e-63 245.0 194 62.4
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 6.1e-63 244.6 194 62.9
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.4e-62 243.4 197 63.5
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 6.7e-62 241.1 210 61.0
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.5e-61 240.0 195 61.5
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 2.0e-61 239.6 145 80.7
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 4.3e-61 238.4 185 64.9
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 7.4e-61 237.7 194 62.9
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.1e-59 233.8 175 64.0
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 3.1e-59 232.3 177 64.4
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 4.5e-58 228.4 151 76.2
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.7e-57 226.5 157 72.6
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 3.8e-57 225.3 167 66.5
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 5.0e-57 224.9 194 59.8
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 9.4e-56 220.7 194 60.8
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.0e-54 217.2 142 72.5
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 2.3e-54 216.1 176 62.5
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 5.7e-53 211.5 154 68.8
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 2.4e-51 206.1 150 67.3
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 4.5e-50 201.8 179 55.9
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.2e-47 193.7 191 53.9
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 2.1e-47 193.0 222 49.5
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 9.7e-45 184.1 194 53.6
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 2.2e-44 183.0 200 46.5
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.8e-44 181.8 120 73.3
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 7.0e-43 177.9 175 51.4
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 1.3e-41 173.7 111 75.7
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.2e-41 172.9 199 49.2
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.6e-39 165.6 142 62.7
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.5e-37 160.2 194 47.9
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.7e-36 156.8 121 64.5
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 2.8e-36 156.0 189 44.4
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 4.1e-35 152.1 185 47.0
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 9.1e-35 151.0 111 64.9
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-28 130.2 93 66.7
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.4e-27 127.1 149 49.7
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 7.7e-26 121.3 193 40.9
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 5.5e-24 115.2 89 62.9
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 2.3e-22 109.8 64 81.2
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.1e-19 99.4 73 72.6
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 7.0e-19 98.2 120 42.5
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 1.7e-17 93.6 72 66.7
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.9e-16 90.1 171 30.4
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.0e-10 70.1 120 35.0
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.5e-08 63.9 42 66.7
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 3.3e-08 62.8 42 66.7
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.4e-06 57.4 38 63.2
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.8e-06 57.0 34 79.4
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.2e-06 55.5 55 49.1
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 6.8e-06 55.1 43 58.1
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 6.8e-06 55.1 108 29.6


User provided reference genes

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