Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 3.2e-184 648.3 330 100.0
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.5e-136 490.0 340 74.1
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.4e-131 473.4 340 70.9
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 2.1e-127 459.5 340 68.2
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 3.1e-126 455.7 340 69.4
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 3.1e-126 455.7 340 67.9
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 5.2e-126 454.9 338 68.3
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.1e-123 447.2 332 68.7
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 5.4e-123 444.9 276 76.8
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 3.5e-122 442.2 276 76.1
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 6.0e-122 441.4 281 76.5
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 7.8e-122 441.0 281 74.4
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 7.8e-122 441.0 284 75.0
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 1.0e-121 440.7 281 73.3
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 1.7e-121 439.9 300 71.0
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 2.3e-121 439.5 303 71.0
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 3.9e-121 438.7 341 64.2
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 1.5e-120 436.8 281 73.7
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 1.5e-120 436.8 337 66.2
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 1.5e-120 436.8 276 76.4
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.5e-120 436.8 276 76.1
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 4.3e-120 435.3 276 76.1
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 4.3e-120 435.3 298 72.1
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 4.3e-120 435.3 277 75.1
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 7.3e-120 434.5 315 67.0
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 7.3e-120 434.5 291 71.1
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 9.6e-120 434.1 276 75.4
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.3e-119 433.7 310 68.7
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.6e-119 433.3 276 75.7
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 2.1e-119 433.0 295 71.9
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 2.8e-119 432.6 280 73.6
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.8e-119 432.6 337 64.7
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.6e-119 432.2 276 75.4
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 3.6e-119 432.2 301 70.4
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 3.6e-119 432.2 282 72.0
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 6.2e-119 431.4 332 65.1
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 6.2e-119 431.4 292 72.9
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 6.2e-119 431.4 297 69.4
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 6.2e-119 431.4 285 72.3
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 6.2e-119 431.4 298 69.1
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 8.1e-119 431.0 341 63.6
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 1.1e-118 430.6 281 72.2
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.1e-118 430.6 276 75.0
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.1e-118 430.6 306 68.6
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.1e-118 430.6 285 73.7
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.4e-118 430.3 320 65.6
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.4e-118 430.3 339 64.0
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.4e-118 430.3 282 72.0
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 1.4e-118 430.3 285 72.3
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.8e-118 429.9 282 72.0
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 2.4e-118 429.5 282 71.6
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 3.1e-118 429.1 283 73.9
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 6.9e-118 427.9 276 72.5
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 6.9e-118 427.9 285 70.9
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.0e-118 427.6 271 75.6
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 9.0e-118 427.6 284 73.9
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 2.6e-117 426.0 278 71.6
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.6e-117 426.0 283 71.7
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 2.6e-117 426.0 282 71.3
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 2.6e-117 426.0 276 73.9
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 3.4e-117 425.6 341 62.2
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.4e-117 425.2 278 71.6
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 5.8e-117 424.9 296 68.9
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 9.9e-117 424.1 281 71.9
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 1.3e-116 423.7 346 62.4
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 1.7e-116 423.3 298 69.5
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 2.2e-116 422.9 309 68.0
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.9e-116 422.5 278 70.9
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 3.8e-116 422.2 337 62.6
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 6.4e-116 421.4 282 69.9
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 8.4e-116 421.0 278 70.5
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 8.4e-116 421.0 327 62.4
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 8.4e-116 421.0 272 74.3
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 8.4e-116 421.0 306 67.0
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 1.1e-115 420.6 278 70.9
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.4e-115 420.2 303 66.7
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.4e-115 420.2 278 69.8
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.4e-115 420.2 272 72.8
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.4e-115 420.2 276 71.4
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 2.4e-115 419.5 278 70.9
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 2.4e-115 419.5 278 70.9
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.4e-115 419.5 293 69.6
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 4.2e-115 418.7 274 72.6
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 7.1e-115 417.9 278 70.1
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 9.3e-115 417.5 279 70.6
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 9.3e-115 417.5 345 60.3
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 2.1e-114 416.4 284 71.1
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 2.1e-114 416.4 278 69.8
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.1e-114 416.4 277 71.1
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 2.1e-114 416.4 278 69.8
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.1e-114 416.4 269 74.3
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 2.7e-114 416.0 278 69.8
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 2.7e-114 416.0 279 70.3
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 3.5e-114 415.6 272 73.2
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 4.6e-114 415.2 279 70.3
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 4.6e-114 415.2 281 70.8
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 6.0e-114 414.8 284 69.4
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 6.0e-114 414.8 281 70.5
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 6.0e-114 414.8 285 69.8
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 1.7e-113 413.3 345 60.3
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 3.9e-113 412.1 281 69.0
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 5.1e-113 411.8 345 60.3
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 6.6e-113 411.4 344 59.6
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 6.6e-113 411.4 281 70.8
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 8.7e-113 411.0 277 70.4
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 1.5e-112 410.2 312 65.1
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 1.9e-112 409.8 265 74.7
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 3.3e-112 409.1 273 70.3
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 4.3e-112 408.7 302 65.6
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 4.3e-112 408.7 285 68.8
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 5.6e-112 408.3 302 65.6
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 7.3e-112 407.9 274 70.8
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 2.1e-111 406.4 281 68.3
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 3.6e-111 405.6 276 69.6
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 4.8e-111 405.2 281 68.3
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 6.2e-111 404.8 285 71.2
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 5.3e-110 401.7 274 70.4
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 3.4e-109 399.1 294 63.6
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 4.5e-109 398.7 281 67.6
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 4.9e-108 395.2 290 66.6
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 6.4e-108 394.8 290 66.6
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 9.3e-107 391.0 274 67.9
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.2e-106 390.6 293 64.8
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 6.0e-106 388.3 278 66.5
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 1.3e-105 387.1 337 58.5
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.9e-104 383.3 330 59.7
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.5e-104 382.9 274 67.5
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 1.1e-102 377.5 307 60.6
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 3.1e-102 375.9 327 59.3
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 4.0e-102 375.6 306 62.4
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 4.0e-102 375.6 259 67.6
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 2.0e-101 373.2 349 56.4
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 4.5e-101 372.1 302 63.9
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 6.5e-100 368.2 274 63.9
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 2.5e-99 366.3 272 65.4
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 7.9e-98 361.3 279 61.6
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 3.4e-93 345.9 231 72.3
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 7.6e-93 344.7 274 58.8
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.1e-88 330.9 276 56.9
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.5e-88 330.5 274 56.9
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 1.5e-85 320.5 254 65.7
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 3.6e-82 309.3 186 79.6
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 5.1e-81 305.4 282 55.0
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 6.5e-76 288.5 305 48.5
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.9e-75 287.0 221 64.7
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 3.2e-75 286.2 273 49.1
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 7.9e-74 281.6 286 54.2
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 5.7e-72 275.4 183 71.6
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.4e-65 254.2 239 59.8
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 9.1e-62 241.5 218 59.6
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.7e-60 237.3 174 69.5
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 6.1e-58 228.8 220 59.1
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.1e-54 218.0 300 44.0
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 1.3e-52 211.1 155 64.5
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.2e-51 205.3 123 78.9
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 3.6e-50 203.0 251 48.2
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 7.5e-48 195.3 197 53.8
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 2.9e-44 183.3 175 53.1
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.0e-36 158.3 138 59.4
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 5.2e-33 146.0 278 33.1
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 4.4e-32 142.9 90 74.4
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 1.0e-28 131.7 77 79.2
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 3.6e-26 123.2 164 47.0
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.1e-25 120.2 75 76.0
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.0e-24 117.5 68 83.8
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.7e-23 113.2 164 42.1
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 5.4e-22 109.4 89 58.4
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 6.2e-18 95.9 68 70.6
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.3e-17 94.0 83 56.6
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.1e-09 68.6 181 27.1
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 5.2e-09 66.2 89 41.6


User provided reference genes

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