Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 2.0e-80 302.4 154 100.0
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 9.8e-75 283.5 154 94.2
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 6.8e-68 260.8 140 95.0
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 6.1e-53 211.1 141 82.3
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 5.2e-52 208.0 141 78.7
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 1.9e-49 199.5 140 72.9
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 8.6e-47 190.7 150 66.7
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 6.2e-45 184.5 142 66.9
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 2.3e-44 182.6 147 64.6
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 4.0e-44 181.8 143 67.8
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.5e-43 179.9 143 66.4
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 1.3e-42 176.8 115 75.7
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 1.7e-42 176.4 140 64.3
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 2.9e-42 175.6 147 64.6
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 6.4e-42 174.5 107 80.4
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 8.3e-42 174.1 141 66.0
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 8.3e-42 174.1 151 61.6
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 1.4e-41 173.3 143 65.0
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 1.4e-41 173.3 147 62.6
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 1.9e-41 172.9 147 62.6
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 9.2e-41 170.6 109 78.9
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 9.2e-41 170.6 138 65.2
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 1.2e-40 170.2 138 65.2
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 1.6e-40 169.9 137 59.9
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 1.6e-40 169.9 151 59.6
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 2.1e-40 169.5 146 60.3
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 2.1e-40 169.5 150 62.7
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 3.5e-40 168.7 147 61.9
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 3.5e-40 168.7 109 78.0
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 3.5e-40 168.7 159 58.5
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 3.5e-40 168.7 149 60.4
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 4.6e-40 168.3 105 77.1
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 4.6e-40 168.3 145 62.8
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 6.0e-40 167.9 149 61.1
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 1.3e-39 166.8 147 63.3
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 1.3e-39 166.8 146 60.3
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 1.3e-39 166.8 157 56.7
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 1.7e-39 166.4 122 69.7
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 2.3e-39 166.0 103 75.7
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 2.3e-39 166.0 147 61.2
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 2.3e-39 166.0 145 62.8
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 3.9e-39 165.2 105 75.2
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 1.5e-38 163.3 114 67.5
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 1.9e-38 162.9 146 60.3
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 3.3e-38 162.2 145 59.3
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 3.3e-38 162.2 104 74.0
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 4.3e-38 161.8 147 59.2
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 7.3e-38 161.0 107 71.0
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 9.5e-38 160.6 143 58.0
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 9.5e-38 160.6 144 57.6
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 1.6e-37 159.8 151 58.9
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 2.1e-37 159.5 153 55.6
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 2.1e-37 159.5 150 58.7
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 2.1e-37 159.5 108 69.4
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 3.6e-37 158.7 144 60.4
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 6.2e-37 157.9 154 56.5
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 3.1e-36 155.6 109 70.6
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 5.2e-36 154.8 109 67.9
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 6.8e-36 154.5 105 71.4
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 8.9e-36 154.1 104 71.2
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 8.9e-36 154.1 140 59.3
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 1.2e-35 153.7 145 58.6
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 1.5e-35 153.3 109 68.8
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 4.4e-35 151.8 152 52.6
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 7.6e-35 151.0 115 65.2
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 1.3e-34 150.2 162 54.3
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 1.7e-34 149.8 98 72.4
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 2.9e-34 149.1 146 54.8
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 2.9e-34 149.1 98 72.4
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 1.1e-33 147.1 107 67.3
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 1.4e-33 146.7 135 57.8
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 2.4e-33 146.0 97 71.1
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 3.2e-33 145.6 107 63.6
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 3.2e-33 145.6 107 64.5
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 4.1e-33 145.2 98 69.4
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 4.1e-33 145.2 107 68.2
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 7.1e-33 144.4 109 67.9
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 7.1e-33 144.4 96 74.0
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 9.2e-33 144.1 109 67.9
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 9.2e-33 144.1 143 52.4
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 1.6e-32 143.3 154 53.2
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 2.1e-32 142.9 146 51.4
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 2.7e-32 142.5 140 54.3
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 3.5e-32 142.1 138 51.4
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 4.6e-32 141.7 138 52.9
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 7.8e-32 141.0 146 51.4
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 7.8e-32 141.0 98 66.3
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 7.8e-32 141.0 98 66.3
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 7.8e-32 141.0 144 51.4
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 7.8e-32 141.0 146 50.7
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 7.8e-32 141.0 110 62.7
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 7.8e-32 141.0 97 71.1
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 3.9e-31 138.7 104 63.5
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 3.9e-31 138.7 104 63.5
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 3.9e-31 138.7 113 55.8
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 6.6e-31 137.9 110 60.0
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 6.6e-31 137.9 149 49.7
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 1.5e-30 136.7 107 61.7
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 1.5e-30 136.7 107 62.6
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 2.5e-30 136.0 97 67.0
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 2.8e-29 132.5 149 49.0
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 1.8e-28 129.8 112 58.0
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 1.8e-28 129.8 171 43.9
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 4.9e-26 121.7 80 72.5
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 2.4e-25 119.4 188 39.9
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 1.2e-24 117.1 150 48.7
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 2.1e-24 116.3 117 56.4
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 7.8e-24 114.4 104 58.7
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 8.7e-23 110.9 61 86.9
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 2.1e-21 106.3 55 92.7
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 2.1e-21 106.3 106 58.5
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 1.8e-20 103.2 74 64.9
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 6.9e-20 101.3 140 40.7
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 2.2e-18 96.3 101 48.5
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 1.9e-17 93.2 98 43.9
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 4.2e-17 92.0 96 50.0
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 1.2e-16 90.5 94 57.4
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 5.1e-15 85.1 92 43.5
Actinidia14692 Actinidia chinensis HOM05D001428 ORTHO05D001306 2.1e-13 79.7 146 45.2
Rhsim07G0144900 Rhododendron simsii HOM05D006497 ORTHO05D008263 4.0e-12 75.5 42 81.0
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 1.3e-10 70.5 95 40.0
MBI13_g38674_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 6.0e-08 61.6 104 38.5
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 5.1e-07 58.5 92 33.7


User provided reference genes

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