Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.7e-240 833.6 407 100.0
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.0e-187 660.2 413 80.4
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 8.3e-166 587.4 412 71.4
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.6e-164 583.2 383 75.7
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 6.0e-164 581.3 372 76.6
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 7.3e-162 574.3 408 71.3
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.2e-161 573.5 412 70.1
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.1e-157 560.5 413 67.8
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 1.6e-156 556.6 411 68.4
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 3.5e-156 555.4 409 69.2
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 6.0e-156 554.7 426 67.1
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 4.3e-154 548.5 388 68.8
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 9.9e-151 537.3 418 67.7
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 9.9e-151 537.3 414 66.7
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.3e-150 537.0 409 65.3
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.9e-150 535.8 371 70.4
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.1e-149 533.9 395 68.9
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 2.4e-149 532.7 397 67.0
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.6e-148 530.0 408 66.4
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.0e-147 525.8 407 64.4
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 9.6e-146 520.8 382 67.8
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.6e-145 520.0 411 65.7
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 3.6e-145 518.8 391 66.0
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.4e-144 516.9 391 66.0
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 1.5e-143 513.5 408 64.7
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 2.6e-143 512.7 413 64.4
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 4.5e-143 511.9 405 63.2
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.9e-142 509.2 373 68.4
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 2.9e-142 509.2 382 66.0
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 6.0e-140 501.5 383 66.3
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.1e-138 497.3 386 64.2
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 5.6e-138 495.0 418 62.0
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.3e-137 493.8 395 62.5
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 1.3e-137 493.8 388 63.4
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 2.1e-137 493.0 381 65.1
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 3.7e-137 492.3 395 64.3
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 4.8e-137 491.9 388 63.1
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 4.8e-137 491.9 385 64.2
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 8.1e-137 491.1 417 61.2
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.1e-137 491.1 415 62.4
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.4e-136 490.3 368 64.7
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 1.8e-136 490.0 391 62.7
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 9.0e-136 487.6 395 62.3
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 2.0e-135 486.5 387 62.8
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 2.0e-135 486.5 386 61.7
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.6e-135 486.1 391 62.1
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.6e-135 486.1 439 58.5
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 2.6e-135 486.1 385 63.4
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 4.5e-135 485.3 394 62.2
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.5e-135 485.3 377 62.6
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 4.5e-135 485.3 370 64.1
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 7.6e-135 484.6 385 63.4
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 9.9e-135 484.2 379 64.4
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.9e-134 482.6 530 52.1
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.9e-134 482.6 369 63.7
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 3.8e-134 482.3 388 61.3
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 6.4e-134 481.5 381 62.7
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 8.4e-134 481.1 381 62.2
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.1e-133 480.7 388 61.6
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.1e-133 480.7 383 61.6
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.1e-133 480.7 383 62.1
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.4e-133 480.3 388 61.9
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 2.5e-133 479.6 392 61.2
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 4.2e-133 478.8 380 61.8
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.5e-133 478.4 381 61.7
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 5.5e-133 478.4 375 63.5
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 7.1e-133 478.0 381 61.7
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 9.3e-133 477.6 380 62.4
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 1.2e-132 477.2 404 58.7
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.1e-132 476.5 385 63.9
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 2.1e-132 476.5 379 62.3
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 7.9e-132 474.6 387 61.0
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 7.9e-132 474.6 570 48.1
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.0e-131 474.2 380 61.3
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 1.0e-131 474.2 388 61.3
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.3e-131 473.8 387 61.0
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 1.8e-131 473.4 381 63.8
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 5.1e-131 471.9 381 61.4
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 6.7e-131 471.5 382 60.5
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 8.7e-131 471.1 388 60.3
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.1e-130 470.7 381 61.4
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.1e-130 470.7 381 61.4
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.5e-130 470.3 369 62.1
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 3.3e-130 469.2 385 60.8
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 4.3e-130 468.8 381 60.6
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 9.6e-130 467.6 381 60.6
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 1.3e-129 467.2 379 59.6
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 2.8e-129 466.1 369 61.8
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 4.8e-129 465.3 385 59.0
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 8.2e-129 464.5 375 61.3
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 2.4e-128 463.0 381 65.9
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 3.1e-128 462.6 390 60.8
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.0e-128 462.2 383 61.4
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.0e-128 462.2 383 61.1
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.2e-127 460.7 381 59.6
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.0e-127 459.9 383 59.8
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 5.8e-127 458.4 379 60.2
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.8e-127 458.4 394 59.4
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.0e-126 457.6 397 61.0
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.0e-126 457.6 444 55.6
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 1.7e-126 456.8 381 58.0
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 2.2e-126 456.4 370 61.1
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 6.5e-126 454.9 373 63.0
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 1.4e-125 453.8 369 60.7
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 3.2e-125 452.6 381 59.8
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 6.7e-123 444.9 397 57.9
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.1e-122 444.1 386 58.0
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 7.4e-122 441.4 364 62.1
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 2.2e-121 439.9 368 62.2
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 2.6e-119 433.0 372 57.5
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 2.1e-116 423.3 376 57.4
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 4.6e-116 422.2 399 54.6
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.9e-116 421.4 394 56.3
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.1e-115 418.7 373 59.0
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.8e-112 410.2 430 53.5
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 5.9e-111 405.2 424 50.9
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 2.2e-110 403.3 296 68.9
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 2.9e-110 402.9 337 60.8
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 9.4e-109 397.9 298 66.8
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.9e-107 392.5 368 54.6
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 9.1e-104 381.3 410 49.8
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 5.9e-103 378.6 334 57.8
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 1.7e-102 377.1 292 65.8
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.2e-102 376.7 405 49.6
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 2.1e-100 370.2 375 54.9
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.2e-99 365.5 406 50.5
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 4.4e-98 362.5 429 47.3
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.8e-97 359.8 408 48.5
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 4.1e-88 329.3 269 62.1
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 7.7e-87 325.1 278 59.0
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 3.2e-85 319.7 385 44.4
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 7.2e-85 318.5 324 51.2
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 9.4e-85 318.2 393 44.0
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 2.3e-83 313.5 390 46.2
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.5e-82 310.8 307 56.0
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 1.1e-77 294.7 266 56.8
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 5.5e-77 292.4 556 35.3
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 5.5e-77 292.4 269 54.3
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 2.8e-76 290.0 382 42.4
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-72 278.1 379 44.9
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 5.0e-70 269.2 219 63.0
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 2.1e-68 263.8 214 60.7
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.2e-60 238.0 288 47.2
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 1.9e-53 214.2 303 40.3
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.5e-50 204.5 221 46.6
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.8e-43 181.0 138 70.3
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.4e-41 172.6 199 50.3
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 4.3e-37 159.8 338 31.7
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.0e-34 151.0 428 28.7
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 3.4e-34 150.2 347 29.4
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.4e-27 127.5 114 52.6
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 7.6e-26 122.5 96 57.3
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 4.3e-21 106.7 81 60.5
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.4e-18 97.1 63 68.3
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 4.6e-15 86.7 135 41.5
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 7.9e-15 85.9 82 54.9
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 1.0e-14 85.5 46 80.4
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.1e-12 77.8 43 76.7
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 3.8e-09 67.0 61 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 3.2e-08 63.9 50 52.0


User provided reference genes

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