Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.8e-82 308.5 155 100.0
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.9e-71 271.6 141 96.5
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.9e-71 271.6 141 96.5
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.2e-67 260.0 132 99.2
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.0e-65 250.8 141 87.9
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 2.1e-64 249.2 139 87.1
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 7.8e-64 247.3 140 86.4
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.0e-63 246.9 140 85.7
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.9e-63 245.0 141 85.1
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.1e-62 243.4 141 83.0
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.1e-62 243.4 141 83.0
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.6e-62 241.1 141 84.4
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.1e-60 236.9 141 79.4
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 1.4e-60 236.5 141 81.6
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.8e-60 236.1 141 80.9
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 2.3e-60 235.7 141 80.1
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 2.3e-60 235.7 141 80.1
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 3.1e-60 235.3 141 80.9
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 4.0e-60 235.0 140 81.4
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 5.2e-60 234.6 141 78.0
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 8.9e-60 233.8 140 81.4
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 2.0e-59 232.6 139 81.3
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 2.6e-59 232.3 141 78.7
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 3.4e-59 231.9 140 80.0
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 4.4e-59 231.5 142 79.6
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 7.5e-59 230.7 141 78.7
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 7.5e-59 230.7 141 77.3
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 9.9e-59 230.3 141 78.7
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 1.3e-58 229.9 142 79.6
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.3e-58 229.9 141 78.0
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.7e-58 229.6 140 77.1
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 2.2e-58 229.2 141 78.0
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 2.2e-58 229.2 140 77.9
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 2.2e-58 229.2 141 78.0
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 2.9e-58 228.8 141 75.2
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 2.9e-58 228.8 141 77.3
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 6.4e-58 227.6 139 79.9
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 8.3e-58 227.3 141 78.0
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 1.4e-57 226.5 141 78.0
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 1.9e-57 226.1 141 76.6
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 2.4e-57 225.7 141 78.0
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 2.4e-57 225.7 141 76.6
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 3.2e-57 225.3 140 77.9
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 3.2e-57 225.3 141 78.0
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 7.1e-57 224.2 140 76.4
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 1.2e-56 223.4 142 76.1
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.6e-56 223.0 143 76.2
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.6e-56 223.0 143 77.6
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 2.7e-56 222.2 140 75.0
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.7e-56 222.2 140 79.3
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 2.7e-56 222.2 143 76.2
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 3.5e-56 221.9 140 76.4
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 7.8e-56 220.7 141 73.8
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.0e-55 220.3 140 74.3
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 1.3e-55 219.9 141 76.6
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 1.3e-55 219.9 141 75.2
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 1.7e-55 219.5 143 75.5
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 2.3e-55 219.2 141 72.3
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 2.3e-55 219.2 140 74.3
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 2.3e-55 219.2 141 75.2
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.9e-55 218.4 140 72.9
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 3.9e-55 218.4 140 73.6
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 5.1e-55 218.0 143 73.4
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 5.1e-55 218.0 141 74.5
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 8.6e-55 217.2 141 73.0
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 1.1e-54 216.9 141 73.0
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.5e-54 216.5 141 72.3
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 1.5e-54 216.5 140 74.3
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.9e-54 216.1 143 73.4
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 1.9e-54 216.1 141 72.3
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.5e-54 215.7 143 72.7
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 2.5e-54 215.7 143 73.4
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 2.5e-54 215.7 143 73.4
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 2.5e-54 215.7 140 73.6
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 3.3e-54 215.3 143 73.4
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 3.3e-54 215.3 141 73.0
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 3.3e-54 215.3 141 73.0
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 5.6e-54 214.5 141 71.6
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 7.3e-54 214.2 139 74.8
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 2.1e-53 212.6 140 72.1
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 3.6e-53 211.8 166 65.7
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.7e-53 211.5 141 75.9
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 4.7e-53 211.5 137 71.5
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 4.7e-53 211.5 146 76.0
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 6.2e-53 211.1 143 72.7
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 8.1e-53 210.7 141 72.3
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 1.1e-52 210.3 141 72.3
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 1.4e-52 209.9 141 71.6
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 2.4e-52 209.1 142 71.8
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 2.4e-52 209.1 142 71.8
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 2.4e-52 209.1 142 71.8
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 5.2e-52 208.0 142 71.1
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 5.2e-52 208.0 142 71.1
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 6.8e-52 207.6 141 70.9
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 8.9e-52 207.2 142 71.1
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 8.9e-52 207.2 150 72.0
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 8.9e-52 207.2 141 72.3
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.6e-51 205.7 108 98.1
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.7e-50 203.0 137 69.3
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.2e-50 202.6 141 68.8
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 3.8e-50 201.8 141 68.8
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.8e-50 201.8 141 68.8
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.4e-50 201.1 141 68.1
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.4e-50 201.1 141 68.1
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 8.4e-50 200.7 134 72.4
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 8.4e-50 200.7 141 67.4
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.4e-49 199.9 141 67.4
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 1.9e-49 199.5 141 70.9
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 5.4e-49 198.0 137 68.6
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 7.8e-48 194.1 141 66.7
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 5.6e-46 188.0 115 77.4
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.1e-44 183.7 141 66.0
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 7.6e-43 177.6 141 66.0
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 2.7e-40 169.1 141 62.4
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 4.6e-32 141.7 133 51.1
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 1.3e-29 133.7 138 52.9
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.4e-28 130.2 139 46.0
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 6.9e-28 127.9 148 50.0
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 1.2e-27 127.1 140 45.0
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 6.5e-26 121.3 130 52.3
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 9.3e-25 117.5 74 77.0
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 1.5e-19 100.1 143 42.0
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.9e-17 93.2 68 64.7
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.5e-17 92.8 73 60.3
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 1.2e-16 90.5 57 73.7
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 1.2e-16 90.5 57 73.7
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.3e-15 87.0 65 67.7
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 1.3e-13 80.5 189 34.4
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 4.5e-11 72.0 135 37.8
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 4.5e-11 72.0 135 37.8
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 1.2e-08 63.9 135 36.3
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.0e-07 60.8 42 61.9
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 2.5e-06 56.2 40 65.0


User provided reference genes

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