Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.5e-161 571.6 299 100.0
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.1e-142 509.2 301 92.4
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.3e-115 420.2 301 76.1
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.9e-115 419.1 293 78.8
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.4e-114 416.8 297 76.8
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.2e-113 413.7 297 74.4
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 7.9e-113 411.0 301 74.8
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 3.3e-111 405.6 292 75.7
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.1e-109 400.6 305 73.1
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 3.4e-108 395.6 292 74.3
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 3.4e-108 395.6 293 74.4
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 2.9e-107 392.5 287 74.2
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 4.2e-106 388.7 325 67.4
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 5.5e-106 388.3 299 70.9
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 5.5e-106 388.3 297 71.4
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 9.3e-106 387.5 280 75.7
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.6e-105 386.7 294 71.1
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 2.7e-105 386.0 277 73.3
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 3.5e-105 385.6 315 67.6
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 7.9e-105 384.4 279 74.9
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 7.9e-105 384.4 333 65.8
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 7.9e-105 384.4 281 75.4
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 1.0e-104 384.0 283 73.9
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.3e-104 383.6 295 69.2
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 1.8e-104 383.3 282 71.6
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.3e-104 382.9 307 69.4
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 3.0e-104 382.5 275 72.7
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 6.7e-104 381.3 292 72.3
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.5e-103 380.2 296 70.3
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.5e-103 380.2 275 72.7
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 1.5e-103 380.2 296 71.6
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 1.9e-103 379.8 276 72.8
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 1.9e-103 379.8 301 69.8
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 4.3e-103 378.6 282 71.6
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 4.3e-103 378.6 298 69.5
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.3e-103 378.6 289 70.6
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 5.6e-103 378.3 275 72.7
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.6e-103 378.3 293 68.9
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 5.6e-103 378.3 271 73.8
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 7.4e-103 377.9 280 72.5
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 9.6e-103 377.5 282 70.6
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.6e-102 376.7 293 68.9
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 2.8e-102 375.9 280 72.5
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.8e-102 375.9 293 68.6
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 2.8e-102 375.9 275 72.7
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.7e-102 375.6 293 68.3
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 4.8e-102 375.2 280 72.9
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 6.2e-102 374.8 293 68.3
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 6.2e-102 374.8 280 71.1
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 6.2e-102 374.8 280 73.2
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 8.2e-102 374.4 282 70.2
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.1e-101 374.0 280 71.8
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.1e-101 374.0 280 72.5
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 1.4e-101 373.6 273 72.2
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.8e-101 373.2 279 72.0
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 3.1e-101 372.5 281 68.7
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 6.9e-101 371.3 270 73.3
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 9.0e-101 370.9 293 68.6
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 1.5e-100 370.2 290 71.4
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.0e-100 369.8 291 69.4
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 3.4e-100 369.0 280 71.1
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.3e-99 367.1 276 71.7
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.9e-99 365.9 290 68.6
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 4.9e-99 365.2 305 64.9
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.1e-98 364.0 281 69.8
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.4e-98 363.6 275 70.9
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 4.2e-98 362.1 275 70.2
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 7.1e-98 361.3 288 70.1
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 1.6e-97 360.1 281 66.9
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 2.7e-97 359.4 281 67.3
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 2.7e-97 359.4 270 71.9
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 4.6e-97 358.6 281 66.9
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 4.6e-97 358.6 290 69.0
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 4.6e-97 358.6 289 67.5
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 1.3e-96 357.1 281 66.5
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 3.0e-96 355.9 281 66.2
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 3.0e-96 355.9 299 66.2
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 3.0e-96 355.9 276 69.6
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 3.9e-96 355.5 296 64.2
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 3.9e-96 355.5 289 64.7
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 5.1e-96 355.1 281 67.6
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 5.1e-96 355.1 294 66.3
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 8.7e-96 354.4 281 65.8
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 8.7e-96 354.4 281 65.8
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 3.3e-95 352.4 318 62.9
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 4.3e-95 352.1 281 65.5
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 5.7e-95 351.7 296 63.9
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.3e-94 350.5 281 65.1
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 2.8e-94 349.4 281 65.1
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 9.0e-93 344.4 262 70.2
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 7.7e-92 341.3 276 68.5
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 1.4e-90 337.0 276 65.9
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 2.5e-90 336.3 292 61.3
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 7.2e-90 334.7 243 73.3
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 7.2e-90 334.7 243 73.3
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.6e-89 332.0 265 68.7
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 1.7e-86 323.6 273 64.1
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.5e-84 317.0 276 59.1
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 2.9e-83 312.8 229 73.8
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 5.5e-82 308.5 427 46.1
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 2.7e-81 306.2 268 62.3
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 2.0e-79 300.1 245 68.6
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 7.7e-76 288.1 272 55.5
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 1.4e-74 283.9 181 82.3
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 3.2e-74 282.7 228 68.4
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 9.4e-74 281.2 228 66.7
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 6.7e-72 275.0 229 69.0
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 3.3e-71 272.7 288 52.1
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 4.4e-71 272.3 234 66.2
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 9.7e-71 271.2 266 54.5
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.1e-69 266.2 238 62.6
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 3.5e-68 262.7 271 53.1
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 7.7e-68 261.5 266 50.8
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 9.4e-66 254.6 189 74.6
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 8.0e-65 251.5 266 51.5
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 8.8e-64 248.1 312 50.0
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 8.8e-64 248.1 239 64.0
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 5.0e-51 205.7 256 47.3
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.2e-49 201.1 194 57.7
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.0e-47 193.7 272 43.8
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 7.5e-47 191.8 191 58.1
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 2.2e-46 190.3 254 46.9
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 8.6e-43 178.3 169 59.2
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 1.4e-37 161.0 287 37.3
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.1e-24 118.2 85 76.5
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 5.4e-21 105.9 78 70.5
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 1.5e-18 97.8 73 69.9
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 2.8e-17 93.6 75 64.0
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 8.1e-17 92.0 65 75.4
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 1.5e-15 87.8 66 69.7
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 7.6e-15 85.5 59 64.4
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 2.8e-09 67.0 51 56.9
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 1.1e-08 65.1 46 63.0
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 4.0e-08 63.2 48 56.2
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 1.5e-07 61.2 39 79.5
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 7.6e-07 58.9 89 42.7


User provided reference genes

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