Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.4e-97 357.5 185 100.0
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.3e-77 290.8 187 83.4
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.9e-67 257.7 185 76.2
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.4e-66 255.4 187 75.9
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.7e-62 241.1 185 73.0
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 9.6e-61 237.3 180 73.9
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.9e-50 201.4 185 63.8
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.8e-28 128.6 81 82.7
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.0e-14 82.8 44 90.9
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.0e-14 82.8 44 90.9
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 3.4e-13 79.3 54 70.4
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 4.4e-13 79.0 54 72.2
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 7.5e-13 78.2 45 77.8
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 2.2e-12 76.6 44 77.3
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 2.2e-12 76.6 48 68.8
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 2.8e-12 76.3 58 63.8
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 2.8e-12 76.3 54 70.4
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.8e-12 75.5 43 83.7
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 6.3e-12 75.1 57 63.2
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 8.3e-12 74.7 44 75.0
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 1.4e-11 73.9 44 75.0
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 1.4e-11 73.9 44 75.0
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 1.4e-11 73.9 44 75.0
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 1.4e-11 73.9 44 75.0
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 1.8e-11 73.6 44 75.0
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 1.8e-11 73.6 57 63.2
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 1.8e-11 73.6 45 75.6
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 1.8e-11 73.6 44 75.0
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 1.8e-11 73.6 42 78.6
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.4e-11 73.2 44 75.0
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.4e-11 73.2 44 75.0
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 2.4e-11 73.2 43 79.1
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.1e-11 72.8 43 81.4
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 3.1e-11 72.8 44 70.5
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 3.1e-11 72.8 44 70.5
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 3.1e-11 72.8 44 70.5
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 3.1e-11 72.8 44 70.5
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 3.1e-11 72.8 44 75.0
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 3.1e-11 72.8 44 70.5
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 3.1e-11 72.8 44 70.5
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 3.1e-11 72.8 44 70.5
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 4.1e-11 72.4 44 75.0
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 5.4e-11 72.0 44 75.0
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 5.4e-11 72.0 44 75.0
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 5.4e-11 72.0 44 75.0
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 5.4e-11 72.0 44 75.0
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 5.4e-11 72.0 44 75.0
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 5.4e-11 72.0 44 75.0
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 5.4e-11 72.0 44 72.7
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 5.4e-11 72.0 57 56.1
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 5.4e-11 72.0 44 75.0
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 5.4e-11 72.0 44 75.0
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 7.0e-11 71.6 44 68.2
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 7.0e-11 71.6 42 78.6
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 9.1e-11 71.2 42 78.6
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 9.1e-11 71.2 55 65.5
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 9.1e-11 71.2 44 72.7
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 9.1e-11 71.2 44 72.7
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 1.2e-10 70.9 44 72.7
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 1.2e-10 70.9 44 72.7
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 1.2e-10 70.9 44 72.7
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 1.2e-10 70.9 44 70.5
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 1.2e-10 70.9 44 70.5
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 1.6e-10 70.5 47 63.8
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 1.6e-10 70.5 44 70.5
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 1.6e-10 70.5 44 72.7
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 2.0e-10 70.1 44 68.2
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 2.7e-10 69.7 44 77.3
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 5.9e-10 68.6 44 70.5
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 7.7e-10 68.2 44 70.5
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 7.7e-10 68.2 44 68.2
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 1.0e-09 67.8 42 71.4
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 1.0e-09 67.8 42 71.4
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 1.0e-09 67.8 44 68.2
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 1.3e-09 67.4 45 64.4
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 2.3e-09 66.6 43 65.1
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 2.9e-09 66.2 45 71.1
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 3.8e-09 65.9 43 62.8
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 3.8e-09 65.9 44 65.9
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 5.0e-09 65.5 55 61.8
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 6.5e-09 65.1 40 67.5
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 8.6e-09 64.7 75 44.0
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 1.1e-08 64.3 46 67.4
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 1.5e-08 63.9 35 80.0
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 1.5e-08 63.9 59 54.2
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 1.9e-08 63.5 41 68.3
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 3.2e-08 62.8 50 56.0
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 7.2e-08 61.6 46 63.0
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 1.2e-07 60.8 64 53.1
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 1.2e-07 60.8 64 53.1
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 6.1e-07 58.5 43 60.5
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 1.4e-06 57.4 43 58.1
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 1.8e-06 57.0 55 49.1


User provided reference genes

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