Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028506 Camellia sinensis var. sinensis HOM05D004588 ORTHO05D005365 8.1e-48 193.4 94 100.0
Actinidia29985 Actinidia chinensis HOM05D004588 ORTHO05D005365 3.8e-21 104.8 55 92.7
Lj4g0014219 Lotus japonicus HOM05D004588 ORTHO05D005365 3.8e-21 104.8 89 64.0
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 4.9e-21 104.4 55 92.7
Cc06_g23660 Coffea canephora HOM05D004588 ORTHO05D005365 6.5e-21 104.0 55 92.7
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 6.5e-21 104.0 55 92.7
Prupe.6G124600 Prunus persica HOM05D004588 ORTHO05D005365 6.5e-21 104.0 55 92.7
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 6.5e-21 104.0 55 92.7
Actinidia38537 Actinidia chinensis HOM05D004588 ORTHO05D005365 8.4e-21 103.6 55 90.9
Lalb_Chr02g0150391 Lupinus albus HOM05D004588 ORTHO05D005365 8.4e-21 103.6 55 90.9
Lalb_Chr06g0169291 Lupinus albus HOM05D004588 ORTHO05D005365 8.4e-21 103.6 55 90.9
PGR044G1699 Punica granatum HOM05D004588 ORTHO05D005365 1.1e-20 103.2 55 92.7
arahy.Tifrunner.gnm1.ann1.7DYL36 Arachis hypogaea HOM05D004588 ORTHO05D005365 1.4e-20 102.8 55 89.1
arahy.Tifrunner.gnm1.ann1.7K7KM4 Arachis hypogaea HOM05D004588 ORTHO05D005365 1.4e-20 102.8 55 89.1
arahy.Tifrunner.gnm1.ann1.HQTU6U Arachis hypogaea HOM05D004588 ORTHO05D005365 1.9e-20 102.4 55 89.1
Psat0s11495g0040 Pisum sativum HOM05D004588 ORTHO05D005365 1.9e-20 102.4 59 83.1
QL11p006982 Quercus lobata HOM05D004588 ORTHO05D005365 1.9e-20 102.4 55 90.9
Manes.01G180900 Manihot esculenta HOM05D004588 ORTHO05D005365 2.5e-20 102.1 55 90.9
Potri.018G150100 Populus trichocarpa HOM05D004588 ORTHO05D005365 2.5e-20 102.1 55 90.9
GSVIVG01034226001 Vitis vinifera HOM05D004588 ORTHO05D005365 2.5e-20 102.1 55 90.9
GSVIVG01034243001 Vitis vinifera HOM05D004588 ORTHO05D005365 2.5e-20 102.1 55 90.9
RcHm_v2.0_Chr7g0235191 Rosa chinensis HOM05D004588 ORTHO05D005365 3.2e-20 101.7 55 90.9
unitig_26.g9124 Utricularia gibba HOM05D000513 ORTHO05D003825 3.2e-20 101.7 71 73.2
CDE02G2168 Ceratophyllum demersum HOM05D002987 ORTHO05D003359 4.2e-20 101.3 54 92.6
Ca_10717_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 4.2e-20 101.3 55 89.1
Ca_20351_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 4.2e-20 101.3 55 89.1
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 4.2e-20 101.3 55 90.9
Medtr4g014360 Medicago truncatula HOM05D004588 ORTHO05D005365 4.2e-20 101.3 55 87.3
TPR.G5271 Trifolium pratense HOM05D004588 ORTHO05D005365 4.2e-20 101.3 55 89.1
vmacro20736 Vaccinium macrocarpon HOM05D004588 ORTHO05D005365 4.2e-20 101.3 55 89.1
Atru.chr8.89 Acer truncatum HOM05D004588 ORTHO05D005365 5.5e-20 100.9 55 90.9
CDE04G0148 Ceratophyllum demersum HOM05D004588 ORTHO05D005365 5.5e-20 100.9 55 90.9
FAN14G2878 Fragaria x ananassa HOM05D004588 ORTHO05D005365 5.5e-20 100.9 55 89.1
Medtr6g005030 Medicago truncatula HOM05D004588 ORTHO05D005365 5.5e-20 100.9 55 87.3
MSTRG.19411 Avicennia marina HOM05D004588 ORTHO05D005365 7.1e-20 100.5 55 90.9
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 7.1e-20 100.5 55 90.9
Hma1.2p1_0391F.1_g142890 Hydrangea macrophylla HOM05D004588 ORTHO05D005365 7.1e-20 100.5 55 89.1
Psat0s5319g0080 Pisum sativum HOM05D004588 ORTHO05D005365 7.1e-20 100.5 59 81.4
THA.LOC104800355 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 7.1e-20 100.5 55 85.5
FvH4_5g34540 Fragaria vesca HOM05D004588 ORTHO05D005365 1.2e-19 99.8 55 89.1
FAN04G2398 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.2e-19 99.8 54 90.7
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.2e-19 99.8 55 89.1
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.2e-19 99.8 55 89.1
FAN08G2577 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.2e-19 99.8 55 89.1
FAN09G1784 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.2e-19 99.8 55 89.1
FAN18G1354 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.2e-19 99.8 55 89.1
TWI74G0566 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 1.2e-19 99.8 55 89.1
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 1.6e-19 99.4 55 89.1
Aqoxy7G03968 Aquilegia oxysepala HOM05D004588 ORTHO05D005365 1.6e-19 99.4 55 89.1
ClCG07G006010 Citrullus lanatus HOM05D004588 ORTHO05D005365 1.6e-19 99.4 55 89.1
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 1.6e-19 99.4 55 87.3
MELO3C026421.2 Cucumis melo HOM05D004588 ORTHO05D005365 1.6e-19 99.4 55 89.1
CsaV3_4G009740 Cucumis sativus L. HOM05D004588 ORTHO05D005365 1.6e-19 99.4 55 89.1
SGA_v2.0_scaffold21G09593 Striga asiatica HOM05D004588 ORTHO05D005365 1.6e-19 99.4 55 89.1
SGA_v2.0_scaffold272G46369 Striga asiatica HOM05D004588 ORTHO05D005365 1.6e-19 99.4 55 89.1
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 2.1e-19 99.0 55 87.3
Psat2g183160 Pisum sativum HOM05D004588 ORTHO05D005365 2.1e-19 99.0 55 87.3
THA.LOC104798808 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 2.1e-19 99.0 55 87.3
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 2.7e-19 98.6 55 87.3
DCAR_013469 Daucus carota HOM05D004588 ORTHO05D005365 2.7e-19 98.6 57 87.7
FAN13G2885 Fragaria x ananassa HOM05D004588 ORTHO05D005365 2.7e-19 98.6 55 87.3
Glyma.18G206300 Glycine max HOM05D004588 ORTHO05D005365 2.7e-19 98.6 55 87.3
Lsat_1_v5_gn_4_185681 Lactuca sativa HOM05D004588 ORTHO05D005365 2.7e-19 98.6 55 89.1
Nn5g26959 Nelumbo nucifera HOM05D004588 ORTHO05D005365 2.7e-19 98.6 55 87.3
Dinv31498 Davidia involucrata HOM05D004588 ORTHO05D005365 3.5e-19 98.2 55 89.1
SalBow6G0192 Salvia bowleyana HOM05D004588 ORTHO05D005365 3.5e-19 98.2 55 89.1
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 3.5e-19 98.2 55 87.3
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 3.5e-19 98.2 55 87.3
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 3.5e-19 98.2 55 87.3
HanXRQChr06g0184041 Helianthus annuus HOM05D004588 ORTHO05D005365 4.6e-19 97.8 55 89.1
Hund04573 Selenicereus undatus HOM05D004588 ORTHO05D005365 4.6e-19 97.8 55 87.3
AUR62002237 Chenopodium quinoa HOM05D004588 ORTHO05D005365 6.0e-19 97.4 55 87.3
AUR62015449 Chenopodium quinoa HOM05D004588 ORTHO05D005365 6.0e-19 97.4 55 87.3
COL.COLO4_31171 Corchorus olitorius HOM05D004588 ORTHO05D005365 6.0e-19 97.4 55 87.3
Dinv12627 Davidia involucrata HOM05D004588 ORTHO05D005365 6.0e-19 97.4 55 87.3
Glyma.01G125100 Glycine max HOM05D004588 ORTHO05D005365 6.0e-19 97.4 55 87.3
Glyma.07G155900 Glycine max HOM05D004588 ORTHO05D005365 6.0e-19 97.4 55 85.5
MBI13_g33575_MAGBIO Magnolia biondii HOM05D004588 ORTHO05D005365 6.0e-19 97.4 55 85.5
Phvul.008G093100 Phaseolus vulgaris HOM05D004588 ORTHO05D005365 6.0e-19 97.4 55 85.5
VMungo1383G1103 Vigna mungo HOM05D004588 ORTHO05D005365 6.0e-19 97.4 55 85.5
Duzib248G0295 Durio zibethinus HOM05D004588 ORTHO05D005365 1.0e-18 96.7 55 87.3
Psat0s5319g0120 Pisum sativum HOM05D004588 ORTHO05D005365 1.3e-18 96.3 54 87.0
Psat2g183080 Pisum sativum HOM05D004588 ORTHO05D005365 1.3e-18 96.3 54 87.0
Prupe.1G001800 Prunus persica HOM05D004588 ORTHO05D005365 1.3e-18 96.3 55 87.3
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 1.3e-18 96.3 55 85.5
Ah.07g207540 Amaranthus hybridus HOM05D004588 ORTHO05D005365 1.8e-18 95.9 55 85.5
arahy.Tifrunner.gnm1.ann1.2BL1F5 Arachis hypogaea HOM05D004588 ORTHO05D005365 1.8e-18 95.9 63 73.0
PSO170G5232 Papaver somniferum HOM05D004588 ORTHO05D005365 1.8e-18 95.9 55 83.6
PSO407G0251 Papaver somniferum HOM05D004588 ORTHO05D005365 1.8e-18 95.9 55 83.6
Cpa.g.sc91.70 Carica papaya HOM05D004588 ORTHO05D005365 2.3e-18 95.5 55 85.5
TAR626G1307 Trochodendron aralioides HOM05D004588 ORTHO05D005365 2.3e-18 95.5 55 85.5
BcaNung06952 Brassica carinata HOM05D004588 ORTHO05D005365 3.0e-18 95.1 55 85.5
A05p30670 Brassica napus HOM05D004588 ORTHO05D005365 3.0e-18 95.1 55 85.5
C05p46550 Brassica napus HOM05D004588 ORTHO05D005365 3.0e-18 95.1 55 85.5
BolC5t33384H Brassica oleracea HOM05D004588 ORTHO05D005365 3.0e-18 95.1 55 85.5
BraA05t21909Z Brassica rapa HOM05D004588 ORTHO05D005365 3.0e-18 95.1 55 85.5
Nitab4.5_0004827g0050 Nicotiana tabacum HOM05D004588 ORTHO05D005365 3.0e-18 95.1 55 87.3
Os08g0359600 Oryza sativa ssp. japonica HOM05D004588 ORTHO05D005365 3.9e-18 94.7 55 85.5
AL3G32270 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 6.7e-18 94.0 55 83.6
Oeu008630.1 Olea europaea HOM05D004588 ORTHO05D005365 6.7e-18 94.0 55 81.8
Peaxi162Scf00474g00216 Petunia axillaris HOM05D004588 ORTHO05D005365 6.7e-18 94.0 55 85.5
BcaB06g25942 Brassica carinata HOM05D004588 ORTHO05D005365 8.7e-18 93.6 55 83.6
Thhalv10021804m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 8.7e-18 93.6 55 83.6
Gohir.A05G279932 Gossypium hirsutum HOM05D004588 ORTHO05D005365 8.7e-18 93.6 55 83.6
BcaB04g17345 Brassica carinata HOM05D004588 ORTHO05D005365 1.1e-17 93.2 55 83.6
C08p04210 Brassica napus HOM05D004588 ORTHO05D005365 1.1e-17 93.2 55 83.6
Thhalv10011874m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 1.1e-17 93.2 55 83.6
Psat7g249240 Pisum sativum HOM05D004588 ORTHO05D005365 1.1e-17 93.2 49 89.8
Sp1g36240 Schrenkiella parvula HOM05D004588 ORTHO05D005365 1.1e-17 93.2 55 83.6
Aa31LG10G4590 Aethionema arabicum HOM05D004588 ORTHO05D005365 1.5e-17 92.8 55 81.8
Nitab4.5_0000170g0150 Nicotiana tabacum HOM05D004588 ORTHO05D005365 1.5e-17 92.8 55 83.6
Sp3g16980 Schrenkiella parvula HOM05D004588 ORTHO05D005365 1.5e-17 92.8 55 81.8
Aa31LG8G5720 Aethionema arabicum HOM05D004588 ORTHO05D005365 1.9e-17 92.4 55 81.8
AL1G56520 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 1.9e-17 92.4 55 81.8
AL1G56550 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 1.9e-17 92.4 55 81.8
Carub.0001s3858 Capsella rubella HOM05D004588 ORTHO05D005365 1.9e-17 92.4 55 81.8
CARHR039400 Cardamine hirsuta HOM05D004588 ORTHO05D005365 1.9e-17 92.4 55 81.8
Sc15g0007280 Simmondsia chinensis HOM05D004588 ORTHO05D005365 1.9e-17 92.4 55 83.6
TAR383G0700 Trochodendron aralioides HOM05D004588 ORTHO05D005365 1.9e-17 92.4 49 89.8
Oeu036964.1 Olea europaea HOM05D004588 ORTHO05D005365 2.5e-17 92.0 55 80.0
Zm00001eb041040 Zea mays HOM05D004588 ORTHO05D005365 2.5e-17 92.0 55 81.8
Zm00001eb176930 Zea mays HOM05D004588 ORTHO05D005365 2.5e-17 92.0 55 81.8
AT1G49400 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 3.3e-17 91.7 55 80.0
CiPaw.01G111800 Carya illinoinensis HOM05D004588 ORTHO05D005365 3.3e-17 91.7 55 83.6
Gohir.D05G281600 Gossypium hirsutum HOM05D004588 ORTHO05D005365 5.7e-17 90.9 55 81.8
Gorai.009G295100 Gossypium raimondii HOM05D004588 ORTHO05D005365 5.7e-17 90.9 55 81.8
Rhsim01G0103600 Rhododendron simsii HOM05D004588 ORTHO05D005365 5.7e-17 90.9 49 87.8
RhsimUnG0238800 Rhododendron simsii HOM05D004588 ORTHO05D005365 5.7e-17 90.9 49 87.8
Solyc12g009380.2 Solanum lycopersicum HOM05D004588 ORTHO05D005365 5.7e-17 90.9 55 81.8
Sopen12g004370 Solanum pennellii HOM05D004588 ORTHO05D005365 5.7e-17 90.9 55 81.8
PGSC0003DMG400002922 Solanum tuberosum HOM05D004588 ORTHO05D005365 5.7e-17 90.9 55 81.8
AT3G18880 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 2.2e-16 89.0 55 78.2
SEGI_39311 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 3.7e-16 88.2 55 78.2
SEGI_30295 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 1.1e-15 86.7 55 76.4
ECA238G1741 Erigeron canadensis HOM05D004588 ORTHO05D005365 1.8e-15 85.9 55 78.2
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 3.8e-13 78.2 55 70.9
SMO230G0073 Selaginella moellendorffii HOM05D004588 ORTHO05D005365 6.5e-13 77.4 55 65.5
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 3.2e-12 75.1 55 65.5
Nitab4.5_0000073g0450 Nicotiana tabacum HOM05D004588 ORTHO05D005365 3.2e-12 75.1 70 62.9
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 1.2e-11 73.2 55 65.5
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 3.6e-11 71.6 55 63.6
BcaC07g37057 Brassica carinata HOM05D004588 ORTHO05D005365 1.8e-10 69.3 40 87.5
BolC8t47225H Brassica oleracea HOM05D004588 ORTHO05D005365 1.8e-10 69.3 40 87.5
arahy.Tifrunner.gnm1.ann1.8LR1I7 Arachis hypogaea HOM05D004588 ORTHO05D005365 2.3e-10 68.9 44 68.2
MCO14G513 Micromonas commoda HOM05D004588 ORTHO05D005365 1.7e-08 62.8 55 52.7
AUR62001361 Chenopodium quinoa HOM05D004588 ORTHO05D005365 3.4e-06 55.1 32 87.5


User provided reference genes

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