Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028505 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 1.2e-89 333.2 172 100.0
CSS0018471 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006344 3.2e-42 175.6 113 82.3
CSS0038248 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 3.0e-40 169.1 109 81.7
CSS0009054 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 3.7e-38 162.2 109 78.9
vmacro01067 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 4.9e-35 151.8 94 81.9
vmacro14060 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 6.5e-35 151.4 94 81.9
Rhsim02G0237900 Rhododendron simsii HOM05D000070 ORTHO05D006344 1.4e-34 150.2 97 80.4
Rhsim02G0238200 Rhododendron simsii HOM05D000070 ORTHO05D006344 1.9e-34 149.8 97 79.4
MSTRG.13451 Avicennia marina HOM05D000070 ORTHO05D006344 1.8e-29 133.3 95 71.6
Lj6C778T15 Lonicera japonica HOM05D000070 ORTHO05D006344 1.8e-29 133.3 103 66.0
Peaxi162Scf00175g00320 Petunia axillaris HOM05D000070 ORTHO05D006344 3.1e-29 132.5 95 72.6
QL03p074004 Quercus lobata HOM05D000070 ORTHO05D006344 6.9e-29 131.3 113 61.1
QL03p074454 Quercus lobata HOM05D000070 ORTHO05D006344 6.9e-29 131.3 113 61.1
Nitab4.5_0007061g0080 Nicotiana tabacum HOM05D000070 ORTHO05D006344 1.5e-28 130.2 124 60.5
CAN.G707.5 Capsicum annuum HOM05D000070 ORTHO05D006344 2.0e-28 129.8 96 72.9
Cc11_g11890 Coffea canephora HOM05D000070 ORTHO05D006344 3.4e-28 129.0 95 70.5
Atru.chr11.1617 Acer truncatum HOM05D000070 ORTHO05D006344 4.5e-28 128.6 91 72.5
Cc03_g11290 Coffea canephora HOM05D000070 ORTHO05D006344 7.6e-28 127.9 95 69.5
COL.COLO4_27870 Corchorus olitorius HOM05D000070 ORTHO05D006344 7.6e-28 127.9 128 59.4
Nitab4.5_0000231g0160 Nicotiana tabacum HOM05D000070 ORTHO05D006344 1.3e-27 127.1 124 59.7
GSVIVG01034378001 Vitis vinifera HOM05D000070 ORTHO05D000722 2.2e-27 126.3 95 69.5
Ciclev10031132m.g Citrus clementina HOM05D000070 ORTHO05D006344 5.0e-27 125.2 94 70.2
Nn4g23451 Nelumbo nucifera HOM05D000070 ORTHO05D006344 8.5e-27 124.4 109 57.8
DCAR_030045 Daucus carota HOM05D000070 ORTHO05D006344 1.1e-26 124.0 102 60.8
Cc03_g11280 Coffea canephora HOM05D000070 ORTHO05D033897 1.4e-26 123.6 128 57.8
QL03p074523 Quercus lobata HOM05D000070 ORTHO05D006344 1.4e-26 123.6 120 55.8
TAR365G1030 Trochodendron aralioides HOM05D000070 ORTHO05D006344 1.4e-26 123.6 93 67.7
TAR371G0409 Trochodendron aralioides HOM05D000070 ORTHO05D006344 4.2e-26 122.1 118 55.9
Cc00_g25790 Coffea canephora HOM05D000070 ORTHO05D006344 5.5e-26 121.7 75 78.7
SalBow2G1167 Salvia bowleyana HOM05D000113 ORTHO05D006344 5.5e-26 121.7 93 65.6
Manes.04G050400 Manihot esculenta HOM05D000070 ORTHO05D006344 7.2e-26 121.3 113 57.5
Solyc05g012190.3 Solanum lycopersicum HOM05D000070 ORTHO05D006344 7.2e-26 121.3 96 67.7
Sopen05g007020 Solanum pennellii HOM05D000070 ORTHO05D006344 9.3e-26 120.9 124 57.3
PGSC0003DMG400028368 Solanum tuberosum HOM05D000070 ORTHO05D006344 9.3e-26 120.9 96 68.8
CiPaw.06G092600 Carya illinoinensis HOM05D000070 ORTHO05D006344 1.2e-25 120.6 113 57.5
Sabra01G0099000 Salix brachista HOM05D000070 ORTHO05D006344 2.1e-25 119.8 93 67.7
Duzib251G0829 Durio zibethinus HOM05D000070 ORTHO05D006344 2.7e-25 119.4 101 61.4
Glyma.02G118800 Glycine max HOM05D000070 ORTHO05D006344 2.7e-25 119.4 89 68.5
Haze_11898 Corylus avellana HOM05D000070 ORTHO05D006344 3.6e-25 119.0 94 66.0
Potri.001G128700 Populus trichocarpa HOM05D000070 ORTHO05D006344 3.6e-25 119.0 93 68.8
Thecc.02G329400 Theobroma cacao HOM05D000070 ORTHO05D006344 3.6e-25 119.0 98 64.3
TAR371G0020 Trochodendron aralioides HOM05D000070 ORTHO05D006344 3.6e-25 119.0 86 69.8
Aqoxy2G01115 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 4.6e-25 118.6 77 75.3
Aqoxy1G00608 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 6.1e-25 118.2 77 74.0
ECA234G0905 Erigeron canadensis HOM05D000070 ORTHO05D006344 6.1e-25 118.2 97 63.9
Hund05835 Selenicereus undatus HOM05D000070 ORTHO05D006344 6.1e-25 118.2 111 59.5
Actinidia33245 Actinidia chinensis HOM05D002141 ORTHO05D002119 7.9e-25 117.9 69 85.5
Gohir.D07G006600 Gossypium hirsutum HOM05D000070 ORTHO05D006344 7.9e-25 117.9 99 61.6
Gorai.001G006200 Gossypium raimondii HOM05D000070 ORTHO05D006344 7.9e-25 117.9 99 61.6
PSO017G7094 Papaver somniferum HOM05D000070 ORTHO05D006344 7.9e-25 117.9 90 66.7
PSO478G0742 Papaver somniferum HOM05D000070 ORTHO05D006344 1.0e-24 117.5 90 66.7
PSO478G2435 Papaver somniferum HOM05D000070 ORTHO05D006344 1.0e-24 117.5 90 66.7
Migut.J01072 Erythranthe guttata HOM05D000070 ORTHO05D006344 1.8e-24 116.7 132 49.2
QL03p073983 Quercus lobata HOM05D000070 ORTHO05D006344 1.8e-24 116.7 113 55.8
Gohir.A07G005400 Gossypium hirsutum HOM05D000070 ORTHO05D006344 2.3e-24 116.3 128 53.1
QL03p073969 Quercus lobata HOM05D000070 ORTHO05D006344 2.3e-24 116.3 113 55.8
arahy.Tifrunner.gnm1.ann1.9AW2B2 Arachis hypogaea HOM05D000070 ORTHO05D006344 3.0e-24 115.9 77 72.7
CANSAT11G2528 Cannabis sativa HOM05D000070 ORTHO05D006344 3.9e-24 115.5 93 64.5
MELO3C012157.2 Cucumis melo HOM05D000070 ORTHO05D006344 3.9e-24 115.5 93 64.5
Ah.03g138860 Amaranthus hybridus HOM05D000070 ORTHO05D006344 5.1e-24 115.2 74 77.0
TWI31G0249 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 8.7e-24 114.4 134 52.2
TWI31G0934 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 8.7e-24 114.4 134 52.2
Phvul.003G041700 Phaseolus vulgaris HOM05D000070 ORTHO05D006344 1.1e-23 114.0 113 54.9
SGA_v2.0_scaffold257G45707 Striga asiatica HOM05D000070 ORTHO05D006344 1.9e-23 113.2 122 51.6
arahy.Tifrunner.gnm1.ann1.Z90ZKN Arachis hypogaea HOM05D000070 ORTHO05D006344 2.5e-23 112.8 77 71.4
Cfa008871 Carpinus fangiana HOM05D000070 ORTHO05D006344 2.5e-23 112.8 94 63.8
ClCG05G023650 Citrullus lanatus HOM05D000070 ORTHO05D006344 3.3e-23 112.5 88 65.9
Lsat_1_v5_gn_4_11741 Lactuca sativa HOM05D000070 ORTHO05D006344 4.3e-23 112.1 96 62.5
Prupe.1G288400 Prunus persica HOM05D000070 ORTHO05D006344 4.3e-23 112.1 72 76.4
AUR62003090 Chenopodium quinoa HOM05D000070 ORTHO05D006344 5.7e-23 111.7 122 51.6
Ca_08367_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006344 5.7e-23 111.7 77 70.1
VMungo1215G2913 Vigna mungo HOM05D000070 ORTHO05D006344 7.4e-23 111.3 105 57.1
CsaV3_5G033370 Cucumis sativus L. HOM05D000070 ORTHO05D006344 1.3e-22 110.5 93 61.3
MD16G1060100 Malus domestica HOM05D000070 ORTHO05D006344 1.3e-22 110.5 72 75.0
Lalb_Chr17g0341241 Lupinus albus HOM05D000070 ORTHO05D006344 2.8e-22 109.4 77 71.4
HanXRQChr17g0568381 Helianthus annuus HOM05D000070 ORTHO05D006344 3.7e-22 109.0 72 72.2
EL10Ac6g15010 Beta vulgaris HOM05D000070 ORTHO05D006344 4.8e-22 108.6 109 56.0
Lj1g0014852 Lotus japonicus HOM05D000070 ORTHO05D006344 1.4e-21 107.1 93 61.3
Sed0010273 Sechium edule HOM05D000070 ORTHO05D006344 1.4e-21 107.1 90 63.3
AUR62007907 Chenopodium quinoa HOM05D000070 ORTHO05D006344 2.4e-21 106.3 122 49.2
PGR119G0539 Punica granatum HOM05D000070 ORTHO05D006344 2.4e-21 106.3 84 63.1
Thhalv10003859m.g Eutrema salsugineum HOM05D000070 ORTHO05D006344 3.1e-21 105.9 92 60.9
Cpa.g.sc1.136 Carica papaya HOM05D000070 ORTHO05D006344 4.1e-21 105.5 89 59.6
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 6.9e-21 104.8 77 66.2
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 6.9e-21 104.8 77 66.2
BolC9t56003H Brassica oleracea HOM05D000070 ORTHO05D006344 6.9e-21 104.8 77 66.2
FvH4_4g29870 Fragaria vesca HOM05D000070 ORTHO05D006344 1.2e-20 104.0 72 69.4
FAN07G2606 Fragaria x ananassa HOM05D000070 ORTHO05D006344 1.2e-20 104.0 72 69.4
FAN12G0985 Fragaria x ananassa HOM05D000070 ORTHO05D006344 1.2e-20 104.0 72 69.4
FAN17G0562 Fragaria x ananassa HOM05D000070 ORTHO05D006344 1.2e-20 104.0 72 69.4
RcHm_v2.0_Chr4g0438121 Rosa chinensis HOM05D000070 ORTHO05D006344 1.2e-20 104.0 72 70.8
AL5G13450 Arabidopsis lyrata HOM05D000070 ORTHO05D006344 2.0e-20 103.2 74 67.6
A09p24520 Brassica napus HOM05D000070 ORTHO05D006344 2.0e-20 103.2 77 66.2
CSS0034873 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 2.0e-20 103.2 57 89.5
THA.LOC104801824 Tarenaya hassleriana HOM05D000070 ORTHO05D006344 2.0e-20 103.2 82 63.4
FAN22G1193 Fragaria x ananassa HOM05D000070 ORTHO05D006344 2.6e-20 102.8 72 69.4
Sp2g14350 Schrenkiella parvula HOM05D000070 ORTHO05D006344 2.6e-20 102.8 90 61.1
AT2G03670 Arabidopsis thaliana HOM05D000070 ORTHO05D006344 3.4e-20 102.4 74 67.6
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 3.4e-20 102.4 74 67.6
Carub.0005s0280 Capsella rubella HOM05D000070 ORTHO05D006344 5.9e-20 101.7 92 58.7
ATR0177G056 Amborella trichopoda HOM05D000070 ORTHO05D006344 7.7e-20 101.3 74 66.2
Medtr7g088980 Medicago truncatula HOM05D000070 ORTHO05D006344 1.0e-19 100.9 77 63.6
CARHR146000 Cardamine hirsuta HOM05D000070 ORTHO05D006344 1.3e-19 100.5 92 59.8
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 2.2e-19 99.8 98 53.1
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 2.2e-19 99.8 99 54.5
Psat3g081320 Pisum sativum HOM05D000070 ORTHO05D006344 2.2e-19 99.8 79 59.5
TPR.G22677 Trifolium pratense HOM05D000070 ORTHO05D006344 2.2e-19 99.8 77 63.6
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 2.9e-19 99.4 74 66.2
Rhsim02G0238000 Rhododendron simsii HOM05D000070 ORTHO05D006344 2.9e-19 99.4 53 88.7
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 3.8e-19 99.0 98 55.1
MBI19_g41556_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D006344 3.8e-19 99.0 77 59.7
Eucgr.G02441 Eucalyptus grandis HOM05D000070 ORTHO05D006344 1.9e-18 96.7 74 63.5
CDE05G0678 Ceratophyllum demersum HOM05D000070 ORTHO05D006344 1.4e-16 90.5 102 49.0
SEGI_05577 Sequoiadendron giganteum HOM05D000070 ORTHO05D006344 1.8e-16 90.1 73 60.3
CSS0040639 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110186 1.5e-15 87.0 45 97.8
CSS0047747 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110790 1.5e-15 87.0 45 97.8
Zm00001eb425850 Zea mays HOM05D000070 ORTHO05D006344 1.5e-15 87.0 70 61.4
HPP92_006114 Vanilla planifolia HOM05D000070 ORTHO05D006344 4.4e-15 85.5 70 60.0
CSS0018364 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D113106 1.3e-14 84.0 45 95.6
SMO147G0197 Selaginella moellendorffii HOM05D000070 ORTHO05D006344 1.3e-14 84.0 75 58.7
CBR_g54905 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-13 79.0 75 50.7
Medtr7g088850 Medicago truncatula HOM05D000070 ORTHO05D006344 6.9e-13 78.2 68 57.4
Os04g0498800 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D006344 2.0e-12 76.6 73 56.2
Mapoly0149s0015 Marchantia polymorpha HOM05D000070 ORTHO05D006344 7.7e-12 74.7 72 51.4
Pp3c21_20700 Physcomitrium patens HOM05D000070 ORTHO05D006344 4.7e-09 65.5 74 43.2
AagrBONN_evm.TU.Sc2ySwM_362.1946 Anthoceros agrestis HOM05D000070 ORTHO05D006344 1.0e-08 64.3 76 43.4
PRCOL_00005146 Prasinoderma coloniale HOM05D000070 ORTHO05D006344 1.4e-08 63.9 72 41.7
Actinidia28631 Actinidia chinensis HOM05D000070 ORTHO05D006344 8.8e-08 61.2 74 50.0
Cre17.g700300 Chlamydomonas reinhardtii HOM05D000070 ORTHO05D006344 7.4e-07 58.2 73 38.4
PGR142G2226 Punica granatum HOM05D000070 ORTHO05D007358 3.7e-06 55.8 66 43.9
CBR_g8453 Chara braunii HOM05D000070 ORTHO05D001255 6.3e-06 55.1 81 39.5
SEGI_20551 Sequoiadendron giganteum HOM05D000070 ORTHO05D001255 6.3e-06 55.1 81 38.3
SEGI_33336 Sequoiadendron giganteum HOM05D000070 ORTHO05D000722 6.3e-06 55.1 81 38.3


User provided reference genes

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