Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 9.1e-63 243.8 164 100.0
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 5.9e-62 241.1 164 99.4
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 8.0e-51 204.1 165 87.3
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 2.0e-49 199.5 163 87.1
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 9.8e-49 197.2 164 82.9
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 2.0e-41 172.9 161 81.4
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.8e-39 166.4 166 75.3
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 6.6e-37 157.9 161 70.2
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 1.8e-34 149.8 161 54.0
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 1.2e-33 147.1 161 54.0
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 1.5e-33 146.7 161 67.7
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 4.9e-32 141.7 161 68.3
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 1.4e-31 140.2 166 69.3
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 1.9e-31 139.8 161 70.2
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 9.2e-31 137.5 166 66.3
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 2.7e-30 136.0 160 65.0
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 3.5e-30 135.6 162 63.6
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 1.0e-29 134.0 161 67.7
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 1.3e-29 133.7 166 63.9
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 8.6e-29 131.0 165 66.1
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.5e-28 130.2 168 62.5
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.9e-28 129.8 162 69.1
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 1.9e-28 129.8 161 62.7
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 2.5e-28 129.4 165 64.8
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 2.5e-28 129.4 164 62.8
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 3.3e-28 129.0 166 62.7
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 9.5e-28 127.5 160 66.9
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 2.1e-27 126.3 164 62.8
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 2.1e-27 126.3 165 63.0
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 3.6e-27 125.6 157 66.2
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 4.7e-27 125.2 169 62.1
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 6.8e-26 121.3 169 62.1
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 1.2e-25 120.6 155 66.5
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.2e-25 120.6 163 65.0
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 1.5e-25 120.2 168 60.7
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 2.0e-25 119.8 170 62.4
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 5.8e-25 118.2 161 65.8
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 7.5e-25 117.9 166 60.2
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 7.5e-25 117.9 161 64.6
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 1.3e-24 117.1 165 59.4
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 1.7e-24 116.7 166 58.4
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 2.9e-24 115.9 161 64.0
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 4.9e-24 115.2 154 63.0
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 4.9e-24 115.2 167 56.9
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 6.4e-24 114.8 154 57.1
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 8.3e-24 114.4 161 64.0
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 1.1e-23 114.0 159 52.2
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 1.1e-23 114.0 162 61.7
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 1.4e-23 113.6 161 63.4
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 1.9e-23 113.2 182 58.8
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 1.9e-23 113.2 167 58.1
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 3.2e-23 112.5 169 59.8
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 1.6e-22 110.2 154 58.4
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 3.5e-22 109.0 165 56.4
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 3.5e-22 109.0 162 56.8
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 4.6e-22 108.6 153 57.5
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 6.0e-22 108.2 165 57.0
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 1.0e-21 107.5 165 55.8
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 8.6e-21 104.4 171 55.6
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 2.5e-20 102.8 163 59.5
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 3.3e-20 102.4 170 56.5
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 7.3e-20 101.3 146 67.8
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 1.2e-19 100.5 166 59.6
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 1.1e-18 97.4 163 57.1
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 1.8e-18 96.7 164 57.3
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 1.8e-18 96.7 163 55.8
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 6.8e-18 94.7 159 51.6
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.2e-17 94.0 77 59.7
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 7.6e-17 91.3 67 64.2
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.2e-16 89.7 154 46.1
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 1.1e-15 87.4 155 56.8
Actinidia31594 Actinidia chinensis HOM05D005298 ORTHO05D026321 1.9e-15 86.7 106 50.0
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 7.1e-15 84.7 166 50.6
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 1.2e-14 84.0 156 51.9
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 6.0e-14 81.6 169 50.3
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 3.9e-13 79.0 113 72.6
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 3.3e-12 75.9 162 54.3
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 3.3e-12 75.9 162 54.3
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 1.6e-11 73.6 162 53.7
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 3.6e-11 72.4 163 53.4
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 3.6e-11 72.4 163 53.4
CDE09G0536 Ceratophyllum demersum HOM05D005298 ORTHO05D043882 2.4e-10 69.7 84 46.4
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 6.9e-10 68.2 156 52.6
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 6.9e-10 68.2 164 50.0
Actinidia22750 Actinidia chinensis HOM05D005298 ORTHO05D026321 1.2e-09 67.4 67 58.2
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 2.6e-09 66.2 168 50.0
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 1.1e-07 60.8 127 57.5


User provided reference genes

Program Settings