Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028486 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D003320 9.6e-49 196.4 94 100.0
Dinv29277 Davidia involucrata HOM05D001081 ORTHO05D003320 5.9e-14 80.9 77 55.8
vmacro22637 Vaccinium macrocarpon HOM05D001081 ORTHO05D003320 7.7e-14 80.5 76 55.3
Sopen06g018050 Solanum pennellii HOM05D001081 ORTHO05D003320 3.8e-13 78.2 87 51.7
Nn1g00259 Nelumbo nucifera HOM05D001081 ORTHO05D003320 7.2e-12 73.9 76 51.3
Rhsim03G0209000 Rhododendron simsii HOM05D001081 ORTHO05D003320 1.6e-11 72.8 77 50.6
Actinidia06147 Actinidia chinensis HOM05D001081 ORTHO05D003320 3.6e-11 71.6 76 50.0
Nitab4.5_0009932g0030 Nicotiana tabacum HOM05D001081 ORTHO05D003320 3.6e-11 71.6 79 46.8
Cpa.g.sc39.5 Carica papaya HOM05D001081 ORTHO05D003320 7.9e-11 70.5 108 38.9
Solyc06g051990.4 Solanum lycopersicum HOM05D001081 ORTHO05D003320 1.0e-10 70.1 80 47.5
Nitab4.5_0000015g0280 Nicotiana tabacum HOM05D001081 ORTHO05D003320 1.4e-10 69.7 79 45.6
vmacro10123 Vaccinium macrocarpon HOM05D001081 ORTHO05D003320 1.4e-10 69.7 75 50.7
Rhsim09G0205800 Rhododendron simsii HOM05D001081 ORTHO05D003320 2.3e-10 68.9 94 46.8
Duzib084G0071 Durio zibethinus HOM05D001081 ORTHO05D003320 3.0e-10 68.6 77 44.2
Rhsim06G0231600 Rhododendron simsii HOM05D001081 ORTHO05D003320 3.0e-10 68.6 78 48.7
TAR375G0704 Trochodendron aralioides HOM05D001081 ORTHO05D003320 3.0e-10 68.6 75 50.7
CSS0050389 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D003320 3.9e-10 68.2 75 50.7
Rhsim06G0232000 Rhododendron simsii HOM05D001081 ORTHO05D003320 5.1e-10 67.8 77 49.4
Haze_05843 Corylus avellana HOM05D009249 ORTHO05D002074 1.5e-09 66.2 76 47.4
Eucgr.H00020 Eucalyptus grandis HOM05D001081 ORTHO05D003320 1.5e-09 66.2 83 39.8
CiPaw.06G046100 Carya illinoinensis HOM05D001081 ORTHO05D003320 2.0e-09 65.9 76 44.7
MSTRG.8651 Avicennia marina HOM05D001081 ORTHO05D003320 3.3e-09 65.1 77 44.2
Manes.10G072000 Manihot esculenta HOM05D001081 ORTHO05D003320 3.3e-09 65.1 74 44.6
Prupe.2G309700 Prunus persica HOM05D001081 ORTHO05D003320 3.3e-09 65.1 76 43.4
Duzib068G0185 Durio zibethinus HOM05D001081 ORTHO05D003320 4.3e-09 64.7 77 42.9
FvH4_7g31551 Fragaria vesca HOM05D001081 ORTHO05D003320 4.3e-09 64.7 76 42.1
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 4.3e-09 64.7 76 42.1
Thecc.03G199400 Theobroma cacao HOM05D001081 ORTHO05D003320 4.3e-09 64.7 76 42.1
ClCG00G004120 Citrullus lanatus HOM05D001081 ORTHO05D003320 5.7e-09 64.3 76 43.4
ClCG01G000420 Citrullus lanatus HOM05D001081 ORTHO05D003320 5.7e-09 64.3 76 43.4
Haze_05842 Corylus avellana HOM05D001081 ORTHO05D003320 7.4e-09 63.9 76 46.1
MELO3C005887.2 Cucumis melo HOM05D001081 ORTHO05D003320 7.4e-09 63.9 76 43.4
MD07G1288200 Malus domestica HOM05D001081 ORTHO05D003320 7.4e-09 63.9 75 42.7
QL09p008921 Quercus lobata HOM05D001081 ORTHO05D003320 7.4e-09 63.9 76 42.1
CsaV3_5G000480 Cucumis sativus L. HOM05D001081 ORTHO05D003320 9.7e-09 63.5 76 43.4
CAN.G481.9 Capsicum annuum HOM05D001081 ORTHO05D003320 1.3e-08 63.2 77 41.6
Sabra12G0016100 Salix brachista HOM05D001081 ORTHO05D003320 1.3e-08 63.2 76 42.1
Nitab4.5_0000548g0100 Nicotiana tabacum HOM05D001081 ORTHO05D003320 1.7e-08 62.8 73 43.8
Nitab4.5_0006933g0020 Nicotiana tabacum HOM05D001081 ORTHO05D003320 1.7e-08 62.8 73 43.8
SHI02369 Sapria himalayana HOM05D001081 ORTHO05D003320 1.7e-08 62.8 76 39.5
Sed0011102 Sechium edule HOM05D001081 ORTHO05D003320 1.7e-08 62.8 76 43.4
Potri.012G016000 Populus trichocarpa HOM05D001081 ORTHO05D003320 2.2e-08 62.4 77 41.6
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.8e-08 62.0 72 44.4
FAN10G0061 Fragaria x ananassa HOM05D001081 ORTHO05D003320 3.7e-08 61.6 91 35.2
FAN10G4108 Fragaria x ananassa HOM05D001081 ORTHO05D003320 3.7e-08 61.6 91 35.2
Hma1.2p1_0404F.1_g145400 Hydrangea macrophylla HOM05D001081 ORTHO05D003320 4.8e-08 61.2 76 43.4
Eucgr.H02781 Eucalyptus grandis HOM05D001081 ORTHO05D003320 6.3e-08 60.8 80 37.5
TWI14G0383 Tripterygium wilfordii HOM05D001081 ORTHO05D003320 6.3e-08 60.8 74 39.2
Lj3A904G78 Lonicera japonica HOM05D001081 ORTHO05D003320 1.1e-07 60.1 77 45.5
Peaxi162Scf00740g00139 Petunia axillaris HOM05D001081 ORTHO05D003320 1.1e-07 60.1 78 42.3
Sc25g0000900 Simmondsia chinensis HOM05D001081 ORTHO05D003320 1.1e-07 60.1 77 41.6
GSVIVG01038554001 Vitis vinifera HOM05D001081 ORTHO05D003320 1.1e-07 60.1 83 37.3
MD01G1218300 Malus domestica HOM05D001081 ORTHO05D003320 1.4e-07 59.7 76 40.8
Potri.015G012600 Populus trichocarpa HOM05D001081 ORTHO05D003320 1.4e-07 59.7 77 39.0
Haze_05841 Corylus avellana HOM05D001081 ORTHO05D003320 1.8e-07 59.3 76 46.1
Hund21006 Selenicereus undatus HOM05D001081 ORTHO05D003320 1.8e-07 59.3 76 40.8
Oeu040723.1 Olea europaea HOM05D001081 ORTHO05D003320 3.1e-07 58.5 74 44.6
Peaxi162Scf00618g00337 Petunia axillaris HOM05D001081 ORTHO05D003320 3.1e-07 58.5 48 56.2
Solyc03g083170.3 Solanum lycopersicum HOM05D001081 ORTHO05D003320 3.1e-07 58.5 75 40.0
Solyc03g083210.3 Solanum lycopersicum HOM05D001081 ORTHO05D003320 3.1e-07 58.5 77 39.0
Sopen03g022960 Solanum pennellii HOM05D001081 ORTHO05D003320 3.1e-07 58.5 77 39.0
Cc09_g00180 Coffea canephora HOM05D001081 ORTHO05D003320 4.1e-07 58.2 75 41.3
ECA233G1076 Erigeron canadensis HOM05D001081 ORTHO05D003320 4.1e-07 58.2 65 43.1
CANSAT21G1954 Cannabis sativa HOM05D001081 ORTHO05D003320 6.9e-07 57.4 76 38.2
Manes.17G027400 Manihot esculenta HOM05D001081 ORTHO05D003320 6.9e-07 57.4 76 38.2
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 6.9e-07 57.4 75 44.0
TWI23G0785 Tripterygium wilfordii HOM05D001081 ORTHO05D003320 6.9e-07 57.4 74 37.8
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.2e-06 56.6 77 35.1
RcHm_v2.0_Chr1g0380541 Rosa chinensis HOM05D001081 ORTHO05D003320 1.2e-06 56.6 76 40.8
MSTRG.51 Avicennia marina HOM05D001081 ORTHO05D003320 1.5e-06 56.2 74 40.5
Ciclev10011757m.g Citrus clementina HOM05D001081 ORTHO05D003320 1.5e-06 56.2 77 37.7
Migut.F00210 Erythranthe guttata HOM05D001081 ORTHO05D003320 1.5e-06 56.2 76 43.4
Oeu041053.1 Olea europaea HOM05D001081 ORTHO05D003320 1.5e-06 56.2 73 46.6
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 1.5e-06 56.2 76 44.7
AUR62019406 Chenopodium quinoa HOM05D001081 ORTHO05D003320 2.0e-06 55.8 77 35.1
HanXRQChr08g0225261 Helianthus annuus HOM05D001081 ORTHO05D003320 2.0e-06 55.8 65 43.1
Atru.chr12.2212 Acer truncatum HOM05D001081 ORTHO05D003320 2.6e-06 55.5 77 33.8
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 2.6e-06 55.5 77 39.0
EL10Ac3g05280 Beta vulgaris HOM05D001081 ORTHO05D003320 2.6e-06 55.5 77 36.4
SalBow2G1109 Salvia bowleyana HOM05D001081 ORTHO05D003320 5.9e-06 54.3 76 39.5
PSO384G4859 Papaver somniferum HOM05D001081 ORTHO05D003320 7.7e-06 53.9 79 35.4


User provided reference genes

Program Settings