Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 3.2e-220 768.1 382 100.0
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 9.1e-215 750.0 382 98.4
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.7e-165 586.3 384 76.6
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 6.9e-162 574.3 383 75.7
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 3.0e-149 532.3 433 64.7
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.3e-141 506.9 386 65.8
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.3e-139 500.4 379 66.5
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.0e-137 493.0 370 68.1
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 2.6e-137 492.7 383 66.1
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.7e-136 490.0 370 68.1
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 3.2e-135 485.7 386 66.1
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 2.7e-134 482.6 386 65.5
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 1.0e-133 480.7 386 65.3
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 8.7e-133 477.6 360 65.8
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 1.5e-132 476.9 379 63.3
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.5e-132 476.1 379 63.6
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 3.3e-132 475.7 381 65.6
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 4.3e-132 475.3 379 64.4
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 7.4e-132 474.6 370 65.1
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.3e-131 473.8 352 67.9
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 3.7e-131 472.2 335 70.4
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 8.2e-131 471.1 367 65.4
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.4e-130 470.3 369 64.2
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.8e-130 469.9 378 64.6
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 2.4e-130 469.5 383 63.2
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 6.9e-130 468.0 368 64.7
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 9.0e-130 467.6 368 66.6
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.2e-129 467.2 378 65.3
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.5e-129 466.8 373 63.3
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.0e-129 466.5 373 63.5
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 5.9e-129 464.9 373 64.9
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.7e-128 463.4 373 63.3
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 8.5e-128 461.1 365 64.9
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 8.5e-128 461.1 373 63.0
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.4e-127 460.3 360 63.9
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.5e-127 459.5 352 67.3
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 3.2e-127 459.1 378 61.9
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.2e-127 459.1 366 64.5
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.7e-126 456.1 358 64.2
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.8e-125 453.4 366 62.8
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.9e-125 452.2 399 59.4
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 5.1e-125 451.8 372 64.2
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.5e-124 450.3 356 65.4
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.5e-124 450.3 369 63.1
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 3.3e-124 449.1 373 62.5
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 7.4e-124 448.0 368 61.1
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 9.7e-124 447.6 371 62.5
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 6.3e-123 444.9 340 65.0
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 6.9e-122 441.4 325 67.7
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 9.1e-122 441.0 365 63.0
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 2.0e-121 439.9 330 66.1
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 2.9e-120 436.0 377 62.1
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 3.8e-120 435.6 370 63.0
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 8.5e-120 434.5 370 60.3
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 4.2e-119 432.2 334 65.3
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.0e-117 427.6 392 58.4
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 1.8e-117 426.8 378 63.0
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.7e-115 420.2 285 72.3
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 2.2e-115 419.9 363 60.6
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 6.3e-115 418.3 321 65.1
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 8.2e-115 417.9 329 65.3
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 7.0e-114 414.8 372 58.3
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 2.0e-113 413.3 348 60.9
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.0e-112 411.0 373 58.4
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 3.8e-112 409.1 353 59.8
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 8.5e-112 407.9 353 60.1
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 3.2e-111 406.0 383 56.9
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.6e-110 403.7 348 60.1
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 4.7e-110 402.1 386 57.5
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 6.1e-110 401.7 375 57.6
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 8.0e-110 401.4 377 58.6
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.4e-109 400.6 381 57.0
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 2.3e-109 399.8 375 57.3
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 8.8e-109 397.9 374 57.5
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 1.1e-108 397.5 373 59.0
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.5e-108 397.1 374 57.2
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.7e-107 393.7 382 56.0
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 1.7e-107 393.7 382 58.1
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 2.8e-107 392.9 368 57.6
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 6.3e-107 391.7 346 58.1
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 3.1e-106 389.4 353 58.1
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 2.0e-105 386.7 366 57.1
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 2.6e-105 386.3 359 58.8
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 5.9e-105 385.2 381 55.4
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 2.2e-104 383.3 341 58.9
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 1.1e-103 380.9 374 56.1
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.9e-103 380.2 317 60.6
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 5.5e-103 378.6 321 61.1
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.5e-103 378.6 329 60.8
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 9.4e-103 377.9 341 57.8
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.2e-102 377.5 297 63.0
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.2e-102 377.5 321 60.4
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.6e-102 377.1 272 69.1
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 2.7e-102 376.3 321 60.4
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 3.6e-102 375.9 321 60.1
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.0e-101 374.4 272 68.8
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.4e-101 374.0 331 58.3
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.3e-101 373.2 331 58.3
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 5.2e-101 372.1 321 59.8
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 6.8e-101 371.7 356 56.7
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 2.6e-100 369.8 335 60.3
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 4.4e-100 369.0 324 59.3
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 7.5e-100 368.2 313 59.1
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 6.3e-99 365.2 291 64.6
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 2.4e-98 363.2 274 65.7
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 2.0e-97 360.1 321 58.6
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 1.9e-95 353.6 272 67.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 1.2e-92 344.4 327 54.1
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 8.3e-91 338.2 325 55.7
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 5.4e-90 335.5 351 50.4
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 1.6e-89 334.0 280 62.9
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 4.7e-86 322.4 291 56.7
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 6.8e-85 318.5 288 55.2
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 3.6e-78 296.2 262 60.3
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 5.8e-68 262.3 243 59.3
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.1e-66 256.1 293 45.1
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 3.0e-64 250.0 269 49.8
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 3.3e-63 246.5 283 46.3
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.6e-62 243.0 295 44.1
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 8.1e-62 241.9 295 45.4
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 2.9e-59 233.4 300 45.0
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 5.4e-58 229.2 186 64.0
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 4.0e-53 213.0 288 41.7
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 5.1e-48 196.1 164 60.4
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.6e-46 191.0 178 57.3
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 4.3e-31 139.8 139 55.4
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 5.6e-31 139.4 88 71.6
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 2.0e-28 131.0 126 55.6
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.3e-24 118.2 170 44.1
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 6.7e-24 115.9 108 55.6
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 1.2e-20 105.1 124 50.0
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 1.2e-20 105.1 124 50.0
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 2.6e-20 104.0 77 66.2
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 2.2e-19 100.9 86 59.3
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 5.7e-15 86.3 82 57.3
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-11 74.7 71 53.5
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.1e-10 72.0 97 39.2
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 3.7e-06 57.0 40 67.5


User provided reference genes

Program Settings