Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 1.7e-97 359.4 189 100.0
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 2.1e-95 352.4 189 98.4
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 2.5e-72 275.8 191 79.1
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 2.0e-69 266.2 187 76.5
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 2.0e-69 266.2 189 76.7
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 9.8e-69 263.8 182 76.4
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 8.3e-68 260.8 188 72.3
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 1.2e-66 256.9 183 74.9
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 1.2e-66 256.9 194 73.7
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 2.7e-66 255.8 188 72.9
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 3.5e-66 255.4 187 71.7
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 6.0e-66 254.6 183 74.3
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 7.8e-66 254.2 188 73.4
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 1.3e-65 253.4 185 73.5
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 2.3e-65 252.7 190 71.1
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 3.0e-65 252.3 188 72.9
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 1.5e-64 250.0 188 71.3
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 4.3e-64 248.4 186 71.5
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 1.2e-63 246.9 187 71.1
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 1.6e-63 246.5 187 72.7
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 3.6e-63 245.4 186 69.9
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 3.6e-63 245.4 187 72.2
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 6.2e-63 244.6 188 68.6
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 8.0e-63 244.2 184 72.8
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 1.4e-62 243.4 186 73.1
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 1.4e-62 243.4 195 68.7
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 1.8e-62 243.0 190 74.2
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 4.0e-62 241.9 181 74.6
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 1.2e-61 240.4 184 70.1
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 9.8e-61 237.3 183 69.9
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 1.7e-60 236.5 183 73.2
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 2.2e-60 236.1 181 70.7
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 2.2e-60 236.1 184 69.6
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 2.2e-60 236.1 184 69.6
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 3.7e-60 235.3 183 71.0
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 4.9e-60 235.0 163 77.9
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 1.1e-59 233.8 183 71.0
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 1.9e-59 233.0 188 68.1
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 2.4e-59 232.6 183 71.0
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 2.4e-59 232.6 182 69.2
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 5.4e-59 231.5 187 64.7
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 9.2e-59 230.7 190 70.0
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 9.2e-59 230.7 181 69.1
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 1.2e-58 230.3 183 69.9
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 1.2e-58 230.3 183 70.5
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 1.2e-58 230.3 180 68.3
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 1.2e-58 230.3 182 66.5
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 2.1e-58 229.6 183 70.5
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 2.1e-58 229.6 183 70.5
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 2.1e-58 229.6 182 65.9
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 4.6e-58 228.4 182 68.7
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 7.8e-58 227.6 185 65.4
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 1.0e-57 227.3 182 65.9
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 1.3e-57 226.9 181 70.2
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.3e-57 226.9 184 66.8
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 3.0e-57 225.7 184 65.2
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 3.9e-57 225.3 198 63.6
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 3.9e-57 225.3 185 67.6
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 3.9e-57 225.3 178 69.1
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 6.6e-57 224.6 183 66.7
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 8.6e-57 224.2 190 65.3
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 8.6e-57 224.2 188 66.0
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 1.5e-56 223.4 187 67.9
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 7.3e-56 221.1 184 63.6
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 7.3e-56 221.1 185 68.6
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 9.5e-56 220.7 189 67.7
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 1.2e-55 220.3 184 65.2
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 1.6e-55 219.9 188 68.1
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 2.1e-55 219.5 179 67.6
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 3.6e-55 218.8 184 63.0
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 4.0e-54 215.3 189 65.6
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 6.8e-54 214.5 190 64.7
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 1.5e-53 213.4 180 66.1
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 2.6e-53 212.6 188 63.8
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.3e-52 210.3 187 62.6
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 1.7e-52 209.9 187 62.6
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 2.9e-52 209.1 189 61.9
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 3.7e-52 208.8 231 55.0
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 3.7e-52 208.8 189 66.1
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 4.9e-52 208.4 180 63.3
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 6.4e-52 208.0 178 64.6
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 8.3e-52 207.6 182 62.6
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 1.1e-51 207.2 195 61.5
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 1.4e-51 206.8 211 58.8
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 2.4e-51 206.1 191 60.2
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 2.4e-51 206.1 179 67.0
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 2.4e-51 206.1 130 80.8
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 9.2e-51 204.1 172 69.8
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 9.2e-51 204.1 164 67.1
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 3.0e-49 199.1 182 62.1
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 3.9e-49 198.7 185 60.5
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 6.6e-49 198.0 113 86.7
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 6.6e-49 198.0 112 87.5
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 1.9e-48 196.4 113 85.0
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 1.9e-48 196.4 113 84.1
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.9e-48 196.4 185 60.0
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 3.3e-48 195.7 187 61.5
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 5.6e-48 194.9 169 60.9
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 5.6e-48 194.9 181 61.9
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 1.2e-47 193.7 113 84.1
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 4.0e-46 188.7 118 82.2
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 6.8e-46 188.0 140 71.4
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 2.0e-45 186.4 151 71.5
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 4.4e-45 185.3 163 68.7
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 1.3e-44 183.7 171 59.1
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 2.9e-44 182.6 112 79.5
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 2.4e-43 179.5 112 76.8
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 3.9e-41 172.2 185 55.7
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 5.8e-37 158.3 102 83.3
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 4.2e-35 152.1 92 79.3
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.5e-34 149.1 92 78.3
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 5.1e-33 145.2 110 63.6
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 1.9e-32 143.3 121 66.9
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 1.9e-32 143.3 182 47.8
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 2.5e-32 142.9 92 78.3
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.3e-31 140.6 152 53.9
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.5e-29 133.7 90 71.1
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 4.5e-29 132.1 70 88.6
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 7.6e-29 131.3 141 57.4
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.7e-28 130.2 133 51.9
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 6.4e-28 128.3 70 85.7
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 1.9e-27 126.7 97 62.9
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 5.4e-27 125.2 101 58.4
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 1.0e-25 120.9 94 61.7
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 3.4e-21 105.9 120 51.7
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 6.4e-20 101.7 109 48.6
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 1.2e-18 97.4 92 55.4
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 3.7e-07 59.3 85 34.1


User provided reference genes

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