Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.8e-196 689.1 367 100.0
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.4e-148 529.3 344 79.4
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 8.1e-144 514.2 378 72.8
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 1.5e-137 493.4 346 74.9
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 2.1e-136 489.6 382 68.8
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 4.8e-136 488.4 417 68.1
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 1.6e-131 473.4 352 72.4
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 9.6e-129 464.2 378 67.2
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 6.9e-127 458.0 348 69.0
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 1.3e-125 453.8 350 69.4
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 1.3e-125 453.8 348 69.5
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 2.2e-125 453.0 350 69.4
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 6.0e-123 444.9 347 67.7
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.8e-122 443.4 382 64.9
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 1.5e-121 440.3 351 69.2
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 2.5e-121 439.5 345 66.7
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 3.7e-120 435.6 376 63.8
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 5.3e-119 431.8 349 67.6
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.5e-118 430.3 341 67.7
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 2.7e-115 419.5 346 66.2
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 5.7e-113 411.8 288 71.9
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 6.3e-112 408.3 350 62.0
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 6.3e-112 408.3 322 66.8
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 9.0e-111 404.4 262 76.3
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.2e-110 404.1 269 74.7
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 1.5e-110 403.7 346 63.3
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 1.5e-110 403.7 346 63.0
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 4.5e-110 402.1 363 63.9
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 7.6e-110 401.4 339 62.8
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 1.3e-109 400.6 358 61.7
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.3e-109 400.6 330 64.2
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 2.9e-109 399.4 255 76.9
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 5.0e-109 398.7 256 76.2
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 3.2e-108 396.0 357 63.9
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 4.2e-108 395.6 322 64.6
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 4.2e-108 395.6 329 64.4
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 9.3e-108 394.4 320 65.9
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 1.6e-107 393.7 375 57.6
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 2.7e-107 392.9 250 75.6
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 4.6e-107 392.1 332 64.2
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 3.0e-106 389.4 316 64.6
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 3.0e-106 389.4 316 64.6
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 5.1e-106 388.7 305 65.9
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 6.7e-106 388.3 354 59.6
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-105 387.5 263 72.6
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 1.1e-105 387.5 264 73.5
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.5e-105 386.3 316 63.0
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 3.3e-105 386.0 329 62.3
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 3.3e-105 386.0 294 65.6
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 5.7e-105 385.2 306 64.4
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 5.7e-105 385.2 306 64.4
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 9.7e-105 384.4 305 65.6
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 9.7e-105 384.4 340 62.6
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.3e-104 384.0 352 60.5
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.3e-104 384.0 330 61.8
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 3.7e-104 382.5 356 64.9
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 4.8e-104 382.1 320 62.8
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 6.3e-104 381.7 331 62.8
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 6.3e-104 381.7 340 61.5
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 8.2e-104 381.3 252 75.8
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 8.2e-104 381.3 322 63.0
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 8.2e-104 381.3 295 67.5
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 1.4e-103 380.6 373 58.4
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 1.4e-103 380.6 372 58.9
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.8e-103 380.2 345 58.8
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 3.1e-103 379.4 323 62.5
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 4.1e-103 379.0 329 62.9
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 4.1e-103 379.0 249 73.1
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 5.3e-103 378.6 369 58.0
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 9.1e-103 377.9 256 72.7
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 9.1e-103 377.9 264 70.5
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 9.1e-103 377.9 256 72.3
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.5e-102 377.1 326 60.7
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 2.6e-102 376.3 349 59.0
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 7.7e-102 374.8 249 74.7
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 1.0e-101 374.4 305 63.6
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 1.0e-101 374.4 249 72.7
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 1.0e-101 374.4 339 61.4
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 3.8e-101 372.5 249 74.3
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 3.8e-101 372.5 239 74.5
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 3.8e-101 372.5 239 74.5
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 5.0e-101 372.1 321 63.6
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 8.5e-101 371.3 255 71.8
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.1e-100 370.9 289 67.5
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.2e-100 369.4 250 71.2
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 3.2e-100 369.4 333 61.9
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 5.5e-100 368.6 253 73.1
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 5.5e-100 368.6 256 71.5
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 7.2e-100 368.2 255 71.8
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 9.4e-100 367.9 256 71.9
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 9.4e-100 367.9 256 71.9
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.2e-99 367.5 260 69.6
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.6e-99 367.1 253 72.7
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 2.1e-99 366.7 318 61.6
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 2.1e-99 366.7 263 70.3
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 2.7e-99 366.3 219 80.8
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 6.1e-99 365.2 263 68.8
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.8e-98 363.6 274 66.1
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 1.5e-97 360.5 309 61.2
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 5.7e-97 358.6 235 74.9
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.2e-96 356.7 292 68.5
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 2.4e-95 353.2 249 70.7
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 4.5e-94 349.0 251 69.3
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 7.7e-94 348.2 279 65.2
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.3e-93 347.4 253 66.0
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 1.7e-93 347.1 355 54.9
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 1.7e-93 347.1 322 56.8
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 6.5e-93 345.1 196 85.7
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.7e-85 320.5 234 66.7
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 2.2e-85 320.1 253 64.4
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 8.5e-85 318.2 179 87.7
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.9e-84 317.0 250 61.6
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 1.8e-82 310.5 252 63.1
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 6.7e-82 308.5 218 72.9
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 1.2e-81 307.8 229 64.2
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 3.3e-81 306.2 177 83.1
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.4e-79 300.1 256 59.8
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.1e-79 299.7 257 59.5
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.9e-77 293.1 178 80.3
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 7.2e-76 288.5 252 62.3
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 9.4e-76 288.1 223 61.0
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 3.1e-71 273.1 194 77.3
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 7.7e-70 268.5 293 55.3
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.2e-62 244.6 153 76.5
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 1.3e-61 241.1 152 77.0
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.7e-61 240.7 160 78.8
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 3.2e-55 219.9 347 42.7
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 1.5e-52 211.1 134 74.6
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 4.3e-52 209.5 322 42.5
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.6e-51 206.5 217 47.0
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.4e-50 204.5 217 46.5
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 3.2e-47 193.4 329 40.4
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 8.6e-45 185.3 253 45.1
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 1.4e-42 177.9 107 78.5
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.4e-42 177.9 107 79.4
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 3.1e-42 176.8 107 77.6
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 3.1e-42 176.8 248 39.5
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 6.8e-42 175.6 132 66.7
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 6.8e-42 175.6 132 66.7
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 6.8e-42 175.6 270 37.8
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 1.5e-41 174.5 132 66.7
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 1.5e-41 174.5 132 66.7
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 1.5e-41 174.5 107 76.6
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 1.7e-40 171.0 107 75.7
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.4e-39 167.9 102 77.5
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.4e-39 167.9 102 77.5
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.2e-39 166.8 163 59.5
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 3.3e-36 156.8 91 83.5
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.0e-29 133.7 110 60.9
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 5.1e-29 132.9 122 59.8
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 1.5e-28 131.3 107 61.7
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 1.9e-28 131.0 79 81.0
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 1.9e-28 131.0 79 81.0
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 1.9e-28 131.0 79 81.0
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 7.3e-28 129.0 109 60.6
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 4.7e-27 126.3 98 62.2
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.0e-25 120.9 189 41.8
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.9e-24 117.1 98 59.2
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 3.2e-23 113.6 103 56.3
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.3e-21 108.2 63 81.0
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 8.7e-21 105.5 76 61.8
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 2.4e-18 97.4 60 76.7
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.2e-17 95.1 237 27.0
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 2.6e-17 94.0 62 66.1
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 7.9e-14 82.4 55 69.1
Oeu044180.2 Olea europaea HOM05D060731 ORTHO05D049468 2.3e-13 80.9 151 44.4
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 8.7e-13 79.0 43 86.0
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 4.3e-12 76.6 67 58.2
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 2.1e-11 74.3 47 72.3
Oeu008102.1 Olea europaea HOM05D060731 ORTHO05D049468 3.2e-07 60.5 151 39.7


User provided reference genes

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