Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 5.1e-30 133.7 63 100.0
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 5.8e-26 120.2 63 87.3
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 9.3e-24 112.8 63 84.1
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 9.3e-24 112.8 63 84.1
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 3.5e-23 110.9 63 82.5
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 3.5e-23 110.9 63 82.5
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 7.9e-23 109.8 63 81.0
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 1.3e-22 109.0 63 81.0
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.3e-22 108.2 57 84.2
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.3e-22 108.2 57 84.2
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 3.9e-22 107.5 60 81.7
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 5.1e-22 107.1 63 77.8
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 5.1e-22 107.1 62 79.0
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.1e-21 105.9 63 77.8
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.1e-21 105.9 63 77.8
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.5e-21 105.5 63 77.8
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.5e-21 105.5 63 77.8
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 1.5e-21 105.5 59 79.7
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.5e-21 105.5 63 77.8
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.5e-21 104.8 59 79.7
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 2.5e-21 104.8 63 77.8
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.3e-21 104.4 62 75.8
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 5.7e-21 103.6 59 79.7
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 7.4e-21 103.2 65 73.8
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 7.4e-21 103.2 60 80.0
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 9.6e-21 102.8 57 82.5
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 9.6e-21 102.8 60 78.3
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 1.3e-20 102.4 63 76.2
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 1.3e-20 102.4 63 73.0
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 1.3e-20 102.4 59 79.7
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.6e-20 102.1 62 74.2
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 1.6e-20 102.1 63 74.6
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.6e-20 102.1 52 80.8
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 1.6e-20 102.1 52 82.7
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.6e-20 102.1 63 74.6
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 2.8e-20 101.3 59 78.0
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.8e-20 101.3 59 78.0
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.8e-20 101.3 59 78.0
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.8e-20 101.3 59 78.0
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 3.7e-20 100.9 63 76.2
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 3.7e-20 100.9 63 76.2
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 3.7e-20 100.9 62 74.2
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 3.7e-20 100.9 63 74.6
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 3.7e-20 100.9 63 77.8
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 6.3e-20 100.1 52 88.5
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 6.3e-20 100.1 62 77.4
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 6.3e-20 100.1 52 88.5
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 6.3e-20 100.1 60 76.7
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 6.3e-20 100.1 63 74.6
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 6.3e-20 100.1 62 69.4
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 8.2e-20 99.8 61 78.7
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 1.1e-19 99.4 64 75.0
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-19 99.4 62 69.4
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 1.1e-19 99.4 63 74.6
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.1e-19 99.4 62 77.4
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.4e-19 99.0 58 72.4
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.4e-19 99.0 62 69.4
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 1.8e-19 98.6 61 73.8
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.8e-19 98.6 61 73.8
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 2.4e-19 98.2 59 76.3
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 2.4e-19 98.2 62 74.2
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 3.1e-19 97.8 52 80.8
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 3.1e-19 97.8 62 75.8
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 3.1e-19 97.8 52 86.5
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 4.1e-19 97.4 64 71.9
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 6.9e-19 96.7 64 73.4
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 6.9e-19 96.7 59 76.3
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 6.9e-19 96.7 52 82.7
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 6.9e-19 96.7 63 69.8
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 9.0e-19 96.3 61 72.1
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 9.0e-19 96.3 61 75.4
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 1.2e-18 95.9 64 67.2
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 1.2e-18 95.9 61 70.5
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 1.5e-18 95.5 62 69.4
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 2.0e-18 95.1 52 82.7
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 2.0e-18 95.1 62 72.6
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 2.0e-18 95.1 65 67.7
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 2.0e-18 95.1 60 70.0
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 2.6e-18 94.7 57 73.7
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 2.6e-18 94.7 59 76.3
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 3.4e-18 94.4 65 72.3
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.4e-18 94.4 58 74.1
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.4e-18 94.4 58 74.1
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.4e-18 94.4 58 74.1
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 3.4e-18 94.4 59 74.6
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 4.5e-18 94.0 63 68.3
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 7.6e-18 93.2 62 67.7
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 7.6e-18 93.2 52 80.8
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 7.6e-18 93.2 59 71.2
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 1.0e-17 92.8 50 80.0
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 1.3e-17 92.4 52 78.8
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 1.3e-17 92.4 52 78.8
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 1.3e-17 92.4 52 76.9
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 3.8e-17 90.9 52 78.8
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 3.8e-17 90.9 52 78.8
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.8e-17 90.9 52 75.0
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 1.1e-16 89.4 65 63.1
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 1.1e-16 89.4 52 75.0
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.1e-16 89.4 63 61.9
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 1.9e-16 88.6 52 78.8
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 3.2e-16 87.8 58 69.0
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 3.2e-16 87.8 51 74.5
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.5e-16 87.0 58 67.2
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.5e-16 87.0 58 67.2
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 5.5e-16 87.0 58 67.2
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 1.6e-15 85.5 58 69.0
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 1.6e-15 85.5 60 58.3
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 3.6e-15 84.3 52 69.2
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 1.0e-14 82.8 54 72.2
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.8e-14 82.0 64 62.5
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.3e-14 81.6 64 64.1
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 3.0e-14 81.3 54 63.0
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 3.0e-14 81.3 53 67.9
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.1e-13 79.3 52 63.5
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 1.5e-13 79.0 67 58.2
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 3.3e-13 77.8 52 67.3
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 5.7e-13 77.0 55 65.5
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 5.7e-13 77.0 49 69.4
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 5.7e-13 77.0 55 56.4
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 1.3e-12 75.9 58 58.6
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 2.8e-12 74.7 38 84.2
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 8.2e-12 73.2 53 58.5
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 8.2e-12 73.2 58 58.6
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 1.5e-10 68.9 36 83.3
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 2.0e-10 68.6 42 69.0
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.1e-07 58.5 49 57.1
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 1.4e-06 55.8 81 37.0
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.4e-06 55.8 51 51.0


User provided reference genes

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