Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028389 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D043144 1.6e-67 259.6 166 100.0
CSS0043880 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.0e-13 80.9 62 69.4
CiPaw.04G049000 Carya illinoinensis HOM05D001733 ORTHO05D001882 1.8e-13 80.1 68 61.8
CsaV3_3G021110 Cucumis sativus L. HOM05D001733 ORTHO05D001882 3.9e-13 79.0 65 64.6
Sabra04G0049200 Salix brachista HOM05D001733 ORTHO05D001882 3.9e-13 79.0 67 62.7
Manes.01G123000 Manihot esculenta HOM05D001733 ORTHO05D001882 5.1e-13 78.6 65 66.2
Manes.02G080600 Manihot esculenta HOM05D001733 ORTHO05D001882 5.1e-13 78.6 65 66.2
PGR042G3423 Punica granatum HOM05D001733 ORTHO05D001882 6.7e-13 78.2 62 67.7
Thecc.04G000500 Theobroma cacao HOM05D001733 ORTHO05D001882 6.7e-13 78.2 66 65.2
TAR622G0535 Trochodendron aralioides HOM05D001733 ORTHO05D001882 6.7e-13 78.2 68 58.8
Actinidia40419 Actinidia chinensis HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 67.7
CSS0033291 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 67.7
Dinv19076 Davidia involucrata HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 67.7
Gohir.A11G169600 Gossypium hirsutum HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 67.7
Gohir.D11G175800 Gossypium hirsutum HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 67.7
Gorai.007G188400 Gossypium raimondii HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 67.7
Potri.017G144700 Populus trichocarpa HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 66.1
Rhsim10G0185000 Rhododendron simsii HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 67.7
Sabra15G0083200 Salix brachista HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 66.1
Sabra17G0121200 Salix brachista HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 66.1
TWI77G0925 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 8.8e-13 77.8 62 67.7
Atru.chr1.2162 Acer truncatum HOM05D001733 ORTHO05D001882 1.1e-12 77.4 61 68.9
Cfa007757 Carpinus fangiana HOM05D001733 ORTHO05D001882 1.1e-12 77.4 62 67.7
CiPaw.03G076600 Carya illinoinensis HOM05D001733 ORTHO05D001882 1.1e-12 77.4 68 61.8
Nn4g24687 Nelumbo nucifera HOM05D001733 ORTHO05D001882 1.1e-12 77.4 68 58.8
Potri.004G074400 Populus trichocarpa HOM05D001733 ORTHO05D001882 1.1e-12 77.4 68 58.8
vmacro18513 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.1e-12 77.4 62 67.7
Zm00001eb230070 Zea mays HOM05D001733 ORTHO05D001882 1.1e-12 77.4 68 58.8
Ciclev10011657m.g Citrus clementina HOM05D001733 ORTHO05D001882 1.5e-12 77.0 65 63.1
COL.COLO4_19771 Corchorus olitorius HOM05D001733 ORTHO05D001882 1.5e-12 77.0 62 67.7
Duzib138G1439 Durio zibethinus HOM05D001733 ORTHO05D001882 1.5e-12 77.0 62 67.7
Lj4A253T37 Lonicera japonica HOM05D001733 ORTHO05D001882 1.5e-12 77.0 66 62.1
Nitab4.5_0001735g0060 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.5e-12 77.0 66 63.6
TWI53G0883 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.5e-12 77.0 62 67.7
Ah.04g163000 Amaranthus hybridus HOM05D001733 ORTHO05D001882 2.0e-12 76.6 68 58.8
ClCG05G011350 Citrullus lanatus HOM05D001733 ORTHO05D001882 2.0e-12 76.6 64 64.1
Rhsim08G0020900 Rhododendron simsii HOM05D001733 ORTHO05D001882 2.0e-12 76.6 62 67.7
Sed0007038 Sechium edule HOM05D001733 ORTHO05D001882 2.0e-12 76.6 65 63.1
Sc09g0004470 Simmondsia chinensis HOM05D001733 ORTHO05D001882 2.0e-12 76.6 62 66.1
EL10Ac4g08931 Beta vulgaris HOM05D001733 ORTHO05D001882 2.5e-12 76.3 51 74.5
CAN.G449.11 Capsicum annuum HOM05D001733 ORTHO05D001882 2.5e-12 76.3 65 63.1
Cc07_g12830 Coffea canephora HOM05D001733 ORTHO05D001882 2.5e-12 76.3 58 69.0
Haze_14315 Corylus avellana HOM05D001733 ORTHO05D001882 2.5e-12 76.3 51 74.5
Dinv28238 Davidia involucrata HOM05D001733 ORTHO05D001882 2.5e-12 76.3 51 74.5
Peaxi162Scf00063g00616 Petunia axillaris HOM05D001733 ORTHO05D001882 2.5e-12 76.3 65 63.1
Hund22202 Selenicereus undatus HOM05D001733 ORTHO05D001882 2.5e-12 76.3 51 74.5
Solyc11g011960.2 Solanum lycopersicum HOM05D001733 ORTHO05D001882 2.5e-12 76.3 65 63.1
Sopen05g032550 Solanum pennellii HOM05D001733 ORTHO05D001882 2.5e-12 76.3 65 63.1
Sopen11g006770 Solanum pennellii HOM05D001733 ORTHO05D001882 2.5e-12 76.3 65 63.1
PGSC0003DMG401013333 Solanum tuberosum HOM05D001733 ORTHO05D001882 2.5e-12 76.3 65 63.1
GSVIVG01026563001 Vitis vinifera HOM05D001733 ORTHO05D001882 2.5e-12 76.3 68 58.8
Zm00001eb320800 Zea mays HOM05D001733 ORTHO05D001882 2.5e-12 76.3 68 55.9
Actinidia28784 Actinidia chinensis HOM05D001733 ORTHO05D001882 3.3e-12 75.9 68 58.8
FvH4_1g27720 Fragaria vesca HOM05D001733 ORTHO05D001882 3.3e-12 75.9 62 66.1
FAN19G1940 Fragaria x ananassa HOM05D001733 ORTHO05D001882 3.3e-12 75.9 62 66.1
MD09G1278300 Malus domestica HOM05D001733 ORTHO05D001882 3.3e-12 75.9 62 64.5
PSO063G7403 Papaver somniferum HOM05D001733 ORTHO05D001882 3.3e-12 75.9 68 58.8
PSO782G3656 Papaver somniferum HOM05D001733 ORTHO05D001882 3.3e-12 75.9 68 58.8
RcHm_v2.0_Chr3g0488851 Rosa chinensis HOM05D001733 ORTHO05D001882 3.3e-12 75.9 62 66.1
Solyc05g054060.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 3.3e-12 75.9 65 63.1
vmacro20474 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 3.3e-12 75.9 61 67.2
Zm00001eb104400 Zea mays HOM05D001733 ORTHO05D001882 3.3e-12 75.9 63 63.5
Aqoxy3G04124 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 4.3e-12 75.5 62 66.1
Cpa.g.sc178.21 Carica papaya HOM05D001733 ORTHO05D001882 4.3e-12 75.5 51 74.5
Lj2A512T37 Lonicera japonica HOM05D001733 ORTHO05D001882 4.3e-12 75.5 51 74.5
MD17G1271300 Malus domestica HOM05D001733 ORTHO05D001882 4.3e-12 75.5 61 65.6
QL02p064794 Quercus lobata HOM05D001733 ORTHO05D001882 4.3e-12 75.5 55 72.7
ATR0807G128 Amborella trichopoda HOM05D001733 ORTHO05D001882 5.7e-12 75.1 51 72.5
MSTRG.3676 Avicennia marina HOM05D001733 ORTHO05D001882 5.7e-12 75.1 65 63.1
CDE02G0713 Ceratophyllum demersum HOM05D001733 ORTHO05D001882 5.7e-12 75.1 51 72.5
CDE04G1424 Ceratophyllum demersum HOM05D001733 ORTHO05D001882 5.7e-12 75.1 51 72.5
MBI08_g09800_MAGBIO Magnolia biondii HOM05D001733 ORTHO05D001882 5.7e-12 75.1 51 72.5
Sc20g0000780 Simmondsia chinensis HOM05D001733 ORTHO05D001882 5.7e-12 75.1 62 64.5
FAN23G2775 Fragaria x ananassa HOM05D001733 ORTHO05D001882 7.4e-12 74.7 62 64.5
Gohir.A08G038600 Gossypium hirsutum HOM05D001733 ORTHO05D001882 7.4e-12 74.7 65 61.5
Gohir.D08G048800 Gossypium hirsutum HOM05D001733 ORTHO05D001882 7.4e-12 74.7 65 61.5
Gorai.004G048300 Gossypium raimondii HOM05D001733 ORTHO05D001882 7.4e-12 74.7 65 61.5
SalBow5G0948 Salvia bowleyana HOM05D001733 ORTHO05D001882 7.4e-12 74.7 51 72.5
SalBow5G5318 Salvia bowleyana HOM05D001733 ORTHO05D001882 7.4e-12 74.7 51 72.5
Migut.K00740 Erythranthe guttata HOM05D001733 ORTHO05D001882 9.7e-12 74.3 51 72.5
Oeu012522.2 Olea europaea HOM05D001733 ORTHO05D001882 9.7e-12 74.3 58 67.2
Prupe.3G015000 Prunus persica HOM05D001733 ORTHO05D001882 9.7e-12 74.3 68 57.4
Sed0017083 Sechium edule HOM05D001733 ORTHO05D001882 9.7e-12 74.3 51 72.5
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 9.7e-12 74.3 51 72.5
AUR62003403 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.3e-11 73.9 51 72.5
AUR62004774 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.3e-11 73.9 51 72.5
DCAR_014145 Daucus carota HOM05D001733 ORTHO05D001882 1.3e-11 73.9 56 69.6
FAN26G3480 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.3e-11 73.9 62 64.5
FAN28G2921 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.3e-11 73.9 62 64.5
PGR004G2261 Punica granatum HOM05D001733 ORTHO05D001882 1.3e-11 73.9 44 81.8
Hund06872 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.3e-11 73.9 51 72.5
SEGI_33272 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 1.3e-11 73.9 54 68.5
THA.LOC104802909 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.3e-11 73.9 55 67.3
THA.LOC104820859 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.3e-11 73.9 55 67.3
unitig_748.g7021 Utricularia gibba HOM05D001733 ORTHO05D001882 1.3e-11 73.9 44 81.8
Aa31LG11G12370 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.7e-11 73.6 65 60.0
Os09g0553200 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 1.7e-11 73.6 68 54.4
HPP92_003187 Vanilla planifolia HOM05D001733 ORTHO05D001882 1.7e-11 73.6 55 63.6
HanXRQChr16g0532261 Helianthus annuus HOM05D001733 ORTHO05D001882 2.2e-11 73.2 66 60.6
Psat0s3165g0080 Pisum sativum HOM05D001733 ORTHO05D001882 2.2e-11 73.2 68 54.4
Actinidia35712 Actinidia chinensis HOM05D001733 ORTHO05D001882 2.8e-11 72.8 51 70.6
CANSAT54G2999 Cannabis sativa HOM05D001733 ORTHO05D001882 2.8e-11 72.8 54 68.5
Glyma.11G210989 Glycine max HOM05D001733 ORTHO05D001882 2.8e-11 72.8 68 55.9
HanXRQChr15g0482381 Helianthus annuus HOM05D001733 ORTHO05D001882 2.8e-11 72.8 51 70.6
Lsat_1_v5_gn_3_67140 Lactuca sativa HOM05D001733 ORTHO05D001882 2.8e-11 72.8 51 70.6
Nn3g18506 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.8e-11 72.8 51 70.6
Os02g0117700 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 2.8e-11 72.8 68 54.4
Phvul.008G240600 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 2.8e-11 72.8 68 55.9
CARHR077270 Cardamine hirsuta HOM05D001733 ORTHO05D001882 3.7e-11 72.4 66 59.1
ECA246G3382 Erigeron canadensis HOM05D001733 ORTHO05D001882 3.7e-11 72.4 51 70.6
Glyma.02G241100 Glycine max HOM05D001733 ORTHO05D001882 3.7e-11 72.4 51 70.6
Glyma.14G210700 Glycine max HOM05D001733 ORTHO05D001882 3.7e-11 72.4 51 70.6
LjContig00141g0019465 Lotus japonicus HOM05D001733 ORTHO05D001882 3.7e-11 72.4 51 70.6
Lalb_Chr15g0085251 Lupinus albus HOM05D001733 ORTHO05D001882 3.7e-11 72.4 68 54.4
Medtr5g077000 Medicago truncatula HOM05D001733 ORTHO05D001882 3.7e-11 72.4 51 70.6
VMungo0647G0783 Vigna mungo HOM05D001733 ORTHO05D001882 3.7e-11 72.4 51 70.6
Ca_17067_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 4.8e-11 72.0 51 70.6
Thhalv10020665m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 4.8e-11 72.0 55 63.6
Medtr3g064490 Medicago truncatula HOM05D001733 ORTHO05D001882 4.8e-11 72.0 51 70.6
AL3G12860 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 6.3e-11 71.6 55 63.6
BcaC05g29872 Brassica carinata HOM05D001733 ORTHO05D001882 6.3e-11 71.6 55 63.6
BcaC05g30312 Brassica carinata HOM05D001733 ORTHO05D001882 6.3e-11 71.6 55 63.6
BcaC09g47739 Brassica carinata HOM05D001733 ORTHO05D001882 6.3e-11 71.6 55 63.6
A05p43950 Brassica napus HOM05D001733 ORTHO05D001882 6.3e-11 71.6 55 63.6
A06p26340 Brassica napus HOM05D001733 ORTHO05D001882 6.3e-11 71.6 55 63.6
BNapus_Darmor_BZH_scaffold_78p00090 Brassica napus HOM05D001733 ORTHO05D001882 6.3e-11 71.6 55 63.6
BraA05t23131Z Brassica rapa HOM05D001733 ORTHO05D001882 6.3e-11 71.6 55 63.6
Carub.0003s0240 Capsella rubella HOM05D001733 ORTHO05D001882 6.3e-11 71.6 55 63.6
Sp3g02280 Schrenkiella parvula HOM05D001733 ORTHO05D001882 6.3e-11 71.6 55 63.6
TPR.G18898 Trifolium pratense HOM05D001733 ORTHO05D001882 6.3e-11 71.6 51 70.6
AT3G03250 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 8.2e-11 71.2 51 68.6
arahy.Tifrunner.gnm1.ann1.4MRL1E Arachis hypogaea HOM05D001733 ORTHO05D001882 8.2e-11 71.2 51 68.6
arahy.Tifrunner.gnm1.ann1.F91WU6 Arachis hypogaea HOM05D001733 ORTHO05D001882 8.2e-11 71.2 51 68.6
Lalb_Chr18g0053731 Lupinus albus HOM05D001733 ORTHO05D001882 8.2e-11 71.2 51 68.6
BolC5t35024H Brassica oleracea HOM05D001733 ORTHO05D001882 1.1e-10 70.9 65 58.5
AL6G28390 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 1.4e-10 70.5 51 68.6
AT5G17310 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 1.4e-10 70.5 51 68.6
A03p08270 Brassica napus HOM05D001733 ORTHO05D001882 1.4e-10 70.5 51 68.6
BraA03t10147Z Brassica rapa HOM05D001733 ORTHO05D001882 1.4e-10 70.5 51 68.6
Carub.0006s1550 Capsella rubella HOM05D001733 ORTHO05D001882 1.4e-10 70.5 51 68.6
Thhalv10013449m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 1.4e-10 70.5 51 68.6
Pp3c11_690 Physcomitrium patens HOM05D001733 ORTHO05D001882 1.4e-10 70.5 44 79.5
Pp3c1_140 Physcomitrium patens HOM05D001733 ORTHO05D001882 1.4e-10 70.5 44 79.5
Sp6g26920 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.4e-10 70.5 51 68.6
Psat2g043240 Pisum sativum HOM05D001733 ORTHO05D001882 1.8e-10 70.1 44 77.3
C03p09620 Brassica napus HOM05D001733 ORTHO05D001882 3.1e-10 69.3 44 77.3
DCAR_003411 Daucus carota HOM05D001733 ORTHO05D001882 5.3e-10 68.6 44 75.0
Mapoly0072s0036 Marchantia polymorpha HOM05D001733 ORTHO05D001882 5.3e-10 68.6 44 77.3
BraA01t04586Z Brassica rapa HOM05D001733 ORTHO05D001882 6.9e-10 68.2 55 61.8
SMO358G0524 Selaginella moellendorffii HOM05D001733 ORTHO05D001882 1.2e-09 67.4 61 59.0
AagrBONN_evm.TU.Sc2ySwM_228.431 Anthoceros agrestis HOM05D001733 ORTHO05D001882 3.4e-09 65.9 44 75.0
CBR_g4484 Chara braunii HOM05D001733 ORTHO05D001882 5.9e-09 65.1 54 64.8
Aqoxy2G02163 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 1.7e-08 63.5 51 60.8
Aqoxy2G02400 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 1.7e-08 63.5 51 60.8
Aqoxy4G00073 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 5.0e-08 62.0 62 54.8
Os01g0264100 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 6.5e-08 61.6 57 56.1
Aa31LG5G13850 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.9e-07 60.1 51 60.8
BolC1t05837H Brassica oleracea HOM05D001733 ORTHO05D043144 3.2e-07 59.3 35 80.0
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 4.2e-07 58.9 77 46.8
CSS0002027 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 7.2e-07 58.2 60 55.0
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 9.4e-07 57.8 68 45.6
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 1.6e-06 57.0 51 60.8
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 3.6e-06 55.8 70 45.7
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 4.7e-06 55.5 51 54.9
TAR362G1142 Trochodendron aralioides HOM05D001733 ORTHO05D001882 4.7e-06 55.5 62 54.8
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 6.1e-06 55.1 55 50.9
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 7.9e-06 54.7 68 41.2
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 7.9e-06 54.7 68 48.5


User provided reference genes

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