Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028377 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 2.5e-91 339.0 194 100.0
CSS0004659 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 4.9e-39 165.2 207 57.5
Dinv39698 Davidia involucrata HOM05D002846 ORTHO05D002692 2.8e-34 149.4 201 46.8
Duzib251G0618 Durio zibethinus HOM05D002846 ORTHO05D002692 4.3e-27 125.6 208 41.8
GSVIVG01030606001 Vitis vinifera HOM05D002846 ORTHO05D002692 9.5e-27 124.4 207 43.5
TAR624G1330 Trochodendron aralioides HOM05D002846 ORTHO05D002692 1.1e-25 120.9 199 42.2
Thecc.02G312900 Theobroma cacao HOM05D002846 ORTHO05D002692 1.8e-25 120.2 207 42.0
Hma1.2p1_0948F.1_g240490 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 8.9e-25 117.9 205 41.5
RhsimUnG0010900 Rhododendron simsii HOM05D002846 ORTHO05D002692 1.2e-24 117.5 203 41.4
TAR627G0783 Trochodendron aralioides HOM05D002846 ORTHO05D002692 3.4e-24 115.9 199 41.2
TAR626G0168 Trochodendron aralioides HOM05D002846 ORTHO05D002692 4.9e-23 112.1 194 40.7
VMungo0971G0001 Vigna mungo HOM05D002846 ORTHO05D002692 4.9e-23 112.1 181 41.4
Phvul.011G105200 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 1.1e-22 110.9 207 39.6
Ciclev10018295m.g Citrus clementina HOM05D002846 ORTHO05D002692 1.9e-22 110.2 215 38.1
vmacro12218 Vaccinium macrocarpon HOM05D002846 ORTHO05D002692 3.2e-22 109.4 192 41.7
Sabra02G0175700 Salix brachista HOM05D002846 ORTHO05D002692 4.1e-22 109.0 212 37.7
Peaxi162Scf00932g00218 Petunia axillaris HOM05D002846 ORTHO05D002692 1.6e-21 107.1 207 39.6
Glyma.12G100400 Glycine max HOM05D002846 ORTHO05D002692 2.1e-21 106.7 186 41.9
Hma1.2p1_0249F.1_g102340 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 2.1e-21 106.7 210 40.0
Cfa014424 Carpinus fangiana HOM05D002846 ORTHO05D002692 2.7e-21 106.3 205 41.5
Glyma.06G303502 Glycine max HOM05D002846 ORTHO05D002692 3.5e-21 105.9 186 40.3
Haze_12882 Corylus avellana HOM05D002846 ORTHO05D002692 6.0e-21 105.1 205 40.0
Nitab4.5_0001176g0060 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.3e-20 104.0 180 43.3
TPR.G4201 Trifolium pratense HOM05D002846 ORTHO05D002692 2.3e-20 103.2 205 39.5
Peaxi162Scf00007g01016 Petunia axillaris HOM05D002846 ORTHO05D002692 5.1e-20 102.1 212 37.7
Lalb_Chr19g0135751 Lupinus albus HOM05D002846 ORTHO05D002692 6.6e-20 101.7 195 36.4
Medtr2g088590 Medicago truncatula HOM05D002846 ORTHO05D002692 8.6e-20 101.3 194 39.7
Cc05_g04910 Coffea canephora HOM05D002846 ORTHO05D002692 1.5e-19 100.5 197 39.1
Atru.chr6.3164 Acer truncatum HOM05D002846 ORTHO05D002692 3.3e-19 99.4 197 38.1
Lalb_Chr03g0028801 Lupinus albus HOM05D002846 ORTHO05D002692 4.3e-19 99.0 201 40.3
Ca_26241_v3 Cicer arietinum L. HOM05D002846 ORTHO05D002692 5.6e-19 98.6 208 37.5
Gohir.A12G156600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 5.6e-19 98.6 201 36.3
MD09G1107000 Malus domestica HOM05D002846 ORTHO05D002692 5.6e-19 98.6 205 46.8
Gohir.D12G159433 Gossypium hirsutum HOM05D002846 ORTHO05D002692 7.3e-19 98.2 202 40.1
Actinidia09707 Actinidia chinensis HOM05D002846 ORTHO05D002692 1.2e-18 97.4 176 42.6
Lalb_Chr01g0005591 Lupinus albus HOM05D002846 ORTHO05D002692 1.2e-18 97.4 194 39.7
Potri.014G151900 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.2e-18 97.4 202 38.1
PGSC0003DMG400025494 Solanum tuberosum HOM05D002846 ORTHO05D002692 1.2e-18 97.4 195 38.5
Gorai.008G172600 Gossypium raimondii HOM05D002846 ORTHO05D002692 1.6e-18 97.1 202 40.6
Prupe.3G218700 Prunus persica HOM05D002846 ORTHO05D002692 1.6e-18 97.1 207 46.9
Peaxi162Scf00462g00005 Petunia axillaris HOM05D002846 ORTHO05D002692 2.1e-18 96.7 186 40.9
Glyma.12G194600 Glycine max HOM05D002846 ORTHO05D002692 6.2e-18 95.1 205 36.1
Sabra14G0115500 Salix brachista HOM05D002846 ORTHO05D002692 1.1e-17 94.4 203 36.9
QL08p033485 Quercus lobata HOM05D002846 ORTHO05D002692 1.4e-17 94.0 201 35.8
Aqoxy4G01970 Aquilegia oxysepala HOM05D002846 ORTHO05D002692 1.8e-17 93.6 192 37.5
CAN.G1151.1 Capsicum annuum HOM05D002846 ORTHO05D002692 1.8e-17 93.6 189 42.3
Lj3g0014799 Lotus japonicus HOM05D002846 ORTHO05D002692 2.4e-17 93.2 208 38.9
Nn1g07065 Nelumbo nucifera HOM05D002846 ORTHO05D002692 3.1e-17 92.8 193 37.8
Duzib268G1153 Durio zibethinus HOM05D002846 ORTHO05D002692 5.2e-17 92.0 192 36.5
Nitab4.5_0002083g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 5.2e-17 92.0 177 39.5
VMungo1080G0378 Vigna mungo HOM05D002846 ORTHO05D002692 5.2e-17 92.0 205 38.0
Phvul.005G114400 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 6.9e-17 91.7 206 38.3
Nitab4.5_0001884g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 8.9e-17 91.3 193 36.8
PGSC0003DMG400005270 Solanum tuberosum HOM05D002846 ORTHO05D002692 2.0e-16 90.1 199 36.7
TPR.G4595 Trifolium pratense HOM05D002846 ORTHO05D002692 2.0e-16 90.1 214 38.8
GSVIVG01001985001 Vitis vinifera HOM05D002846 ORTHO05D002692 2.6e-16 89.7 194 36.1
Oeu041933.1 Olea europaea HOM05D002846 ORTHO05D002692 3.4e-16 89.4 199 39.2
CANSAT64G1541 Cannabis sativa HOM05D002846 ORTHO05D002692 4.4e-16 89.0 214 41.6
Oeu027251.1 Olea europaea HOM05D002846 ORTHO05D002692 4.4e-16 89.0 193 35.2
Oeu036754.1 Olea europaea HOM05D002846 ORTHO05D002692 4.4e-16 89.0 193 34.7
Psat5g264560 Pisum sativum HOM05D002846 ORTHO05D002692 5.8e-16 88.6 184 37.5
QL08p012603 Quercus lobata HOM05D002846 ORTHO05D002692 5.8e-16 88.6 199 36.7
Nitab4.5_0000006g0090 Nicotiana tabacum HOM05D002846 ORTHO05D002692 7.6e-16 88.2 200 38.0
CiPaw.04G116900 Carya illinoinensis HOM05D002846 ORTHO05D002692 2.2e-15 86.7 200 36.0
Dinv02736 Davidia involucrata HOM05D002846 ORTHO05D002692 4.9e-15 85.5 146 43.2
FAN05G4571 Fragaria x ananassa HOM05D002846 ORTHO05D002692 4.9e-15 85.5 206 34.5
Dinv40727 Davidia involucrata HOM05D002846 ORTHO05D002692 6.4e-15 85.1 203 35.5
TWI36G0639 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 6.4e-15 85.1 200 34.5
Lj3g0002811 Lotus japonicus HOM05D002846 ORTHO05D002692 8.4e-15 84.7 207 36.7
EL10Ac9g20666 Beta vulgaris HOM05D002846 ORTHO05D002692 1.1e-14 84.3 199 34.7
RcHm_v2.0_Chr2g0159761 Rosa chinensis HOM05D002846 ORTHO05D002692 1.1e-14 84.3 206 34.5
Actinidia27214 Actinidia chinensis HOM05D002846 ORTHO05D002692 1.4e-14 84.0 203 36.5
COL.COLO4_27687 Corchorus olitorius HOM05D002846 ORTHO05D002692 1.4e-14 84.0 157 40.1
FvH4_6g43420 Fragaria vesca HOM05D002846 ORTHO05D002692 1.4e-14 84.0 207 35.3
Potri.001G419400 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.4e-14 84.0 206 35.4
Manes.13G071601 Manihot esculenta HOM05D002846 ORTHO05D002692 1.9e-14 83.6 207 36.2
Rhsim06G0159700 Rhododendron simsii HOM05D002846 ORTHO05D002692 1.9e-14 83.6 124 43.5
Sabra16G0285000 Salix brachista HOM05D002846 ORTHO05D002692 4.2e-14 82.4 208 35.1
MBI02_g23957_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 7.1e-14 81.6 195 35.4
CiPaw.03G161600 Carya illinoinensis HOM05D002846 ORTHO05D002692 9.3e-14 81.3 147 36.7
FAN14G0905 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.2e-13 80.9 207 34.8
Sopen07g026090 Solanum pennellii HOM05D002846 ORTHO05D002692 1.2e-13 80.9 145 40.0
Lalb_Chr14g0367581 Lupinus albus HOM05D002846 ORTHO05D002692 2.7e-13 79.7 196 34.7
Potri.011G135700 Populus trichocarpa HOM05D002846 ORTHO05D002692 2.7e-13 79.7 204 31.9
Hma1.2p1_1344F.1_g277060 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 3.5e-13 79.3 195 38.5
Solyc07g052460.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 4.6e-13 79.0 148 41.2
FAN02G4078 Fragaria x ananassa HOM05D002846 ORTHO05D002692 6.0e-13 78.6 207 34.3
Lalb_Chr24g0393141 Lupinus albus HOM05D002846 ORTHO05D002692 1.3e-12 77.4 125 41.6
Sabra11G0121900 Salix brachista HOM05D002846 ORTHO05D002692 1.3e-12 77.4 178 33.1
Nitab4.5_0003509g0040 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.3e-12 76.6 182 36.8
Sopen12g001770 Solanum pennellii HOM05D002846 ORTHO05D002692 3.0e-12 76.3 195 36.4
HanXRQChr15g0496381 Helianthus annuus HOM05D002846 ORTHO05D002692 3.9e-12 75.9 203 36.9
Solyc12g005820.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 3.9e-12 75.9 198 36.4
Nn1g03606 Nelumbo nucifera HOM05D002846 ORTHO05D002692 8.7e-12 74.7 153 39.9
Cfa020399 Carpinus fangiana HOM05D002846 ORTHO05D002692 1.5e-11 73.9 201 31.8
FAN09G0250 Fragaria x ananassa HOM05D002846 ORTHO05D002692 3.3e-11 72.8 207 33.8
Medtr4g046870 Medicago truncatula HOM05D002846 ORTHO05D002692 4.3e-11 72.4 150 39.3
arahy.Tifrunner.gnm1.ann1.M85TWM Arachis hypogaea HOM05D002846 ORTHO05D002692 5.6e-11 72.0 205 33.2
Gorai.005G150200 Gossypium raimondii HOM05D002846 ORTHO05D002692 5.6e-11 72.0 192 37.0
Haze_09635 Corylus avellana HOM05D002846 ORTHO05D002692 7.3e-11 71.6 201 32.8
PSO210G5289 Papaver somniferum HOM05D002846 ORTHO05D002692 7.3e-11 71.6 215 30.2
ClCG05G014610 Citrullus lanatus HOM05D002846 ORTHO05D002692 9.6e-11 71.2 172 34.3
MD17G1094800 Malus domestica HOM05D002846 ORTHO05D002692 2.1e-10 70.1 134 50.7
Potri.002G230300 Populus trichocarpa HOM05D002846 ORTHO05D002692 2.8e-10 69.7 150 36.0
Sopen05g027000 Solanum pennellii HOM05D002846 ORTHO05D002692 2.8e-10 69.7 141 37.6
ATR0697G184 Amborella trichopoda HOM05D002846 ORTHO05D002692 4.8e-10 68.9 179 34.6
arahy.Tifrunner.gnm1.ann1.EJQ6C2 Arachis hypogaea HOM05D002846 ORTHO05D002692 4.8e-10 68.9 208 35.1
Manes.12G075700 Manihot esculenta HOM05D002846 ORTHO05D002692 4.8e-10 68.9 142 35.9
Nitab4.5_0015723g0010 Nicotiana tabacum HOM05D002846 ORTHO05D002692 6.2e-10 68.6 175 35.4
MSTRG.14152 Avicennia marina HOM05D002846 ORTHO05D002692 8.1e-10 68.2 198 31.3
Sp3g19720 Schrenkiella parvula HOM05D002846 ORTHO05D002692 1.1e-09 67.8 179 34.6
ClCG02G008550 Citrullus lanatus HOM05D002846 ORTHO05D002692 1.4e-09 67.4 172 34.9
Glyma.13G308000 Glycine max HOM05D002846 ORTHO05D002692 1.4e-09 67.4 132 36.4
Medtr2g083300 Medicago truncatula HOM05D002846 ORTHO05D002692 1.4e-09 67.4 191 30.4
TWI38G1873 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 1.4e-09 67.4 196 37.2
TWI38G2122 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 2.4e-09 66.6 178 34.3
Manes.03G127850 Manihot esculenta HOM05D002846 ORTHO05D002692 3.1e-09 66.2 190 30.0
Actinidia05119 Actinidia chinensis HOM05D002846 ORTHO05D002692 4.0e-09 65.9 201 33.3
MELO3C018090.2 Cucumis melo HOM05D002846 ORTHO05D002692 4.0e-09 65.9 178 33.1
Peaxi162Scf00407g00210 Petunia axillaris HOM05D002846 ORTHO05D002692 4.0e-09 65.9 191 31.9
BcaB04g20571 Brassica carinata HOM05D002846 ORTHO05D002692 5.3e-09 65.5 190 33.7
PGSC0003DMG400008737 Solanum tuberosum HOM05D002846 ORTHO05D002692 5.3e-09 65.5 178 36.0
AUR62037135 Chenopodium quinoa HOM05D002846 ORTHO05D002692 6.9e-09 65.1 210 32.4
Sc12g0002340 Simmondsia chinensis HOM05D002846 ORTHO05D002692 6.9e-09 65.1 219 30.6
Eucgr.A01716 Eucalyptus grandis HOM05D002846 ORTHO05D002692 9.0e-09 64.7 203 32.0
CARHR097660 Cardamine hirsuta HOM05D002846 ORTHO05D002692 1.2e-08 64.3 187 31.6
SalBow1G8286 Salvia bowleyana HOM05D002846 ORTHO05D002692 1.5e-08 63.9 186 32.3
DCAR_019769 Daucus carota HOM05D002846 ORTHO05D002692 2.6e-08 63.2 192 33.9
Psat5g251520 Pisum sativum HOM05D002846 ORTHO05D002692 4.5e-08 62.4 190 29.5
Thecc.07G046400 Theobroma cacao HOM05D002846 ORTHO05D002692 4.5e-08 62.4 201 33.3
A01p33250 Brassica napus HOM05D002846 ORTHO05D002692 5.8e-08 62.0 194 30.4
BraA01t03443Z Brassica rapa HOM05D002846 ORTHO05D002692 5.8e-08 62.0 194 30.4
CsaV3_3G023230 Cucumis sativus L. HOM05D002846 ORTHO05D002692 5.8e-08 62.0 204 32.4
BcaB06g26277 Brassica carinata HOM05D002846 ORTHO05D002692 7.6e-08 61.6 194 32.0
MBI18_g03004_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 7.6e-08 61.6 189 31.2
Duzib213G0532 Durio zibethinus HOM05D002846 ORTHO05D002692 1.3e-07 60.8 180 32.2
Eucgr.F00971 Eucalyptus grandis HOM05D002846 ORTHO05D002692 1.3e-07 60.8 179 33.0
Lsat_1_v5_gn_8_128540 Lactuca sativa HOM05D002846 ORTHO05D002692 1.3e-07 60.8 197 36.0
PGR042G0859 Punica granatum HOM05D002846 ORTHO05D002692 1.3e-07 60.8 214 31.3
C05p41700 Brassica napus HOM05D002846 ORTHO05D002692 1.7e-07 60.5 190 31.6
BolC5t32905H Brassica oleracea HOM05D002846 ORTHO05D002692 1.7e-07 60.5 190 31.6
Carub.0003s2176 Capsella rubella HOM05D002846 ORTHO05D002692 2.2e-07 60.1 193 32.1
Sed0000680 Sechium edule HOM05D002846 ORTHO05D002692 2.2e-07 60.1 177 33.9
ECA246G4222 Erigeron canadensis HOM05D002846 ORTHO05D002692 2.9e-07 59.7 176 31.2
arahy.Tifrunner.gnm1.ann1.53UQ7J Arachis hypogaea HOM05D002846 ORTHO05D002692 3.8e-07 59.3 113 40.7
Hund01143 Selenicereus undatus HOM05D002846 ORTHO05D002692 3.8e-07 59.3 167 31.7
arahy.Tifrunner.gnm1.ann1.JLE0C4 Arachis hypogaea HOM05D002846 ORTHO05D002692 4.9e-07 58.9 114 40.4
BcaC05g28139 Brassica carinata HOM05D002846 ORTHO05D002692 4.9e-07 58.9 173 31.8
Cc05_g13390 Coffea canephora HOM05D002846 ORTHO05D002692 4.9e-07 58.9 204 32.4
FvH4_3g22010 Fragaria vesca HOM05D002846 ORTHO05D002692 4.9e-07 58.9 192 33.9
Sed0016321 Sechium edule HOM05D002846 ORTHO05D002692 4.9e-07 58.9 181 31.5
BolC1t04204H Brassica oleracea HOM05D002846 ORTHO05D002692 6.4e-07 58.5 194 29.9
C01p42460 Brassica napus HOM05D002846 ORTHO05D002692 1.1e-06 57.8 194 30.9
Migut.H01224 Erythranthe guttata HOM05D002846 ORTHO05D002692 1.1e-06 57.8 189 34.4
HanXRQChr05g0159181 Helianthus annuus HOM05D002846 ORTHO05D002692 1.4e-06 57.4 175 28.0
TPR.G19979 Trifolium pratense HOM05D002846 ORTHO05D002692 1.9e-06 57.0 194 30.4
MD03G1209200 Malus domestica HOM05D002846 ORTHO05D002692 2.4e-06 56.6 188 32.4
PSO675G7460 Papaver somniferum HOM05D002846 ORTHO05D002692 3.2e-06 56.2 233 27.0
VMungo1080G0677 Vigna mungo HOM05D002846 ORTHO05D002692 3.2e-06 56.2 177 26.6
AL3G35830 Arabidopsis lyrata HOM05D002846 ORTHO05D002692 4.2e-06 55.8 198 28.3
A05p27020 Brassica napus HOM05D002846 ORTHO05D002692 4.2e-06 55.8 196 31.1
BraA05t21588Z Brassica rapa HOM05D002846 ORTHO05D002692 4.2e-06 55.8 196 31.1
Gohir.A01G076300 Gossypium hirsutum HOM05D002846 ORTHO05D002692 4.2e-06 55.8 179 28.5
BcaC09g49107 Brassica carinata HOM05D002846 ORTHO05D002692 5.4e-06 55.5 194 29.4
FAN25G2313 Fragaria x ananassa HOM05D002846 ORTHO05D002692 5.4e-06 55.5 203 28.6
Lj1A758T10 Lonicera japonica HOM05D002846 ORTHO05D002692 5.4e-06 55.5 125 39.2
Carub.0008s1506 Capsella rubella HOM05D010845 ORTHO05D002692 7.1e-06 55.1 180 30.0
Sc01g0004150 Simmondsia chinensis HOM05D002846 ORTHO05D002692 9.3e-06 54.7 176 29.5


User provided reference genes

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