Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 1.7e-105 386.0 184 100.0
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 1.4e-11 73.9 65 63.1
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 1.8e-11 73.6 38 92.1
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 1.8e-11 73.6 57 68.4
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 1.8e-11 73.6 38 89.5
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 3.1e-11 72.8 38 86.8
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 4.1e-11 72.4 38 89.5
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 4.1e-11 72.4 38 89.5
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 5.3e-11 72.0 38 86.8
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 5.3e-11 72.0 42 81.0
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 7.0e-11 71.6 42 81.0
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 9.1e-11 71.2 38 84.2
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 1.2e-10 70.9 38 86.8
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 1.2e-10 70.9 65 60.0
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 1.2e-10 70.9 57 64.9
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 1.6e-10 70.5 43 76.7
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 1.6e-10 70.5 38 81.6
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 2.0e-10 70.1 65 55.4
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 2.0e-10 70.1 38 86.8
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 2.0e-10 70.1 55 65.5
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 2.0e-10 70.1 38 84.2
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 2.6e-10 69.7 36 88.9
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 2.6e-10 69.7 38 84.2
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 2.6e-10 69.7 38 84.2
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 3.5e-10 69.3 38 86.8
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 3.5e-10 69.3 42 76.2
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 3.5e-10 69.3 53 67.9
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 3.5e-10 69.3 53 67.9
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 3.5e-10 69.3 42 78.6
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 4.5e-10 68.9 99 43.4
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 4.5e-10 68.9 37 86.5
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 4.5e-10 68.9 42 73.8
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 5.9e-10 68.6 37 83.8
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 5.9e-10 68.6 38 81.6
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 5.9e-10 68.6 38 81.6
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 7.7e-10 68.2 56 66.1
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 7.7e-10 68.2 38 81.6
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 1.0e-09 67.8 38 76.3
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 1.3e-09 67.4 38 84.2
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 1.3e-09 67.4 38 84.2
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 1.3e-09 67.4 43 74.4
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 1.3e-09 67.4 38 81.6
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 1.3e-09 67.4 37 86.5
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 1.7e-09 67.0 43 74.4
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 1.7e-09 67.0 37 86.5
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 1.7e-09 67.0 38 76.3
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 1.7e-09 67.0 38 78.9
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 1.7e-09 67.0 38 84.2
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 2.2e-09 66.6 38 81.6
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 2.2e-09 66.6 36 77.8
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 2.9e-09 66.2 37 78.4
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 2.9e-09 66.2 57 63.2
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 3.8e-09 65.9 35 85.7
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 3.8e-09 65.9 44 68.2
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 5.0e-09 65.5 37 83.8
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 5.0e-09 65.5 37 83.8
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 5.0e-09 65.5 37 78.4
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 5.0e-09 65.5 38 76.3
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 5.0e-09 65.5 38 78.9
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 5.0e-09 65.5 38 73.7
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 5.0e-09 65.5 38 78.9
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 5.0e-09 65.5 38 78.9
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 5.0e-09 65.5 38 78.9
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 8.5e-09 64.7 35 82.9
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 1.5e-08 63.9 38 78.9
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 1.5e-08 63.9 40 75.0
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 1.9e-08 63.5 37 81.1
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 2.5e-08 63.2 38 76.3
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.5e-08 63.2 38 76.3
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.5e-08 63.2 38 76.3
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.5e-08 63.2 38 76.3
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 3.2e-08 62.8 38 68.4
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 3.2e-08 62.8 38 73.7
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 4.2e-08 62.4 37 73.0
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 4.2e-08 62.4 35 80.0
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 4.2e-08 62.4 37 75.7
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 4.2e-08 62.4 37 75.7
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 4.2e-08 62.4 39 74.4
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 4.2e-08 62.4 37 78.4
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 5.5e-08 62.0 65 47.7
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 7.2e-08 61.6 37 73.0
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 7.2e-08 61.6 45 68.9
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 9.4e-08 61.2 41 70.7
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 9.4e-08 61.2 35 80.0
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 9.4e-08 61.2 38 76.3
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 9.4e-08 61.2 38 73.7
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 9.4e-08 61.2 37 78.4
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 9.4e-08 61.2 38 71.1
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 1.2e-07 60.8 37 70.3
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 1.2e-07 60.8 47 59.6
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 1.2e-07 60.8 38 76.3
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 2.1e-07 60.1 37 70.3
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 8.0e-07 58.2 34 82.4
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 2.3e-06 56.6 37 70.3
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 2.3e-06 56.6 38 71.1
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 2.3e-06 56.6 34 79.4
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 5.2e-06 55.5 50 58.0
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 6.7e-06 55.1 34 76.5


User provided reference genes

Program Settings