Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.5e-84 316.2 172 100.0
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.2e-83 312.4 172 98.3
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 9.9e-44 180.6 181 62.4
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 8.4e-43 177.6 179 62.0
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 9.3e-42 174.1 180 61.1
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.8e-38 161.8 204 55.4
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 9.3e-34 147.5 210 52.4
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 2.1e-33 146.4 180 56.7
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.8e-32 143.3 185 51.9
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 6.7e-32 141.4 176 55.7
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.9e-31 139.8 191 54.5
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 2.5e-31 139.4 137 62.0
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 9.7e-31 137.5 172 54.7
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 2.2e-30 136.3 113 68.1
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 2.8e-30 136.0 180 55.0
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 4.8e-30 135.2 180 55.0
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 8.2e-30 134.4 180 54.4
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 1.1e-29 134.0 196 50.5
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.1e-29 134.0 196 50.5
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 1.4e-29 133.7 90 81.1
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 2.4e-29 132.9 161 52.2
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 3.1e-29 132.5 173 52.6
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 6.9e-29 131.3 194 44.8
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 6.9e-29 131.3 129 60.5
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 6.9e-29 131.3 144 57.6
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 9.0e-29 131.0 136 56.6
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 1.2e-28 130.6 194 45.4
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.2e-28 130.6 181 49.2
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.5e-28 130.2 172 49.4
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.5e-28 130.2 183 53.6
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 2.0e-28 129.8 180 48.3
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 2.6e-28 129.4 90 77.8
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 2.6e-28 129.4 101 72.3
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 2.6e-28 129.4 82 85.4
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 3.4e-28 129.0 173 48.6
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.5e-28 128.6 124 61.3
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 4.5e-28 128.6 184 46.7
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 4.5e-28 128.6 186 51.1
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 4.5e-28 128.6 88 76.1
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 5.9e-28 128.3 128 59.4
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 5.9e-28 128.3 188 48.4
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.7e-27 126.7 168 50.6
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 2.2e-27 126.3 90 76.7
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 2.2e-27 126.3 130 62.3
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 2.9e-27 125.9 175 48.0
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 2.9e-27 125.9 90 74.4
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 2.9e-27 125.9 102 70.6
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 3.8e-27 125.6 106 66.0
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 3.8e-27 125.6 88 76.1
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.8e-27 125.6 212 44.3
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 5.0e-27 125.2 174 49.4
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 8.5e-27 124.4 179 50.3
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 8.5e-27 124.4 179 49.2
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.4e-26 123.6 166 50.6
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.9e-26 123.2 130 57.7
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 2.5e-26 122.9 175 48.0
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 3.2e-26 122.5 184 50.0
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 3.2e-26 122.5 152 53.3
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 4.2e-26 122.1 106 61.3
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 4.2e-26 122.1 126 59.5
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.2e-26 122.1 126 59.5
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 4.2e-26 122.1 88 70.5
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 5.5e-26 121.7 182 46.7
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 7.2e-26 121.3 187 46.5
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 7.2e-26 121.3 88 68.2
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 9.3e-26 120.9 88 69.3
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 9.3e-26 120.9 182 46.7
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 9.3e-26 120.9 88 69.3
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 9.3e-26 120.9 196 43.9
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.2e-25 120.6 88 68.2
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.2e-25 120.6 88 68.2
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.2e-25 120.6 88 68.2
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.6e-25 120.2 85 72.9
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.6e-25 120.2 85 72.9
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.6e-25 120.2 103 63.1
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 2.1e-25 119.8 88 68.2
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.1e-25 119.8 86 70.9
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 2.1e-25 119.8 86 70.9
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.1e-25 119.8 86 70.9
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 2.1e-25 119.8 86 70.9
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.7e-25 119.4 86 72.1
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 2.7e-25 119.4 122 61.5
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.6e-25 119.0 128 59.4
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.6e-25 119.0 166 52.4
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 4.6e-25 118.6 174 47.1
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 7.9e-25 117.9 173 48.6
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 7.9e-25 117.9 88 67.0
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.0e-24 117.5 183 50.3
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 1.0e-24 117.5 126 53.2
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.0e-24 117.5 189 47.1
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.0e-24 117.5 116 59.5
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.3e-24 117.1 182 46.2
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.8e-24 116.7 183 50.3
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 3.9e-24 115.5 86 69.8
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 5.1e-24 115.2 106 60.4
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 8.7e-24 114.4 175 48.6
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.9e-23 113.2 84 69.0
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 3.3e-23 112.5 172 46.5
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 5.7e-23 111.7 88 69.3
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.7e-23 111.7 164 44.5
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 7.4e-23 111.3 88 63.6
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 9.7e-23 110.9 79 72.2
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 1.3e-22 110.5 183 46.4
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.3e-22 110.5 86 65.1
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 6.3e-22 108.2 104 56.7
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.1e-21 105.9 162 43.2
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 5.3e-21 105.1 72 75.0
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 6.9e-21 104.8 105 55.2
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 6.9e-21 104.8 101 57.4
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.5e-20 103.6 76 73.7
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.2e-19 99.8 102 50.0
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 2.9e-19 99.4 77 63.6
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 8.5e-19 97.8 116 48.3
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 9.4e-18 94.4 100 53.0
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 2.1e-17 93.2 214 36.9
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.7e-17 92.0 57 84.2
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.3e-16 89.7 80 70.0
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 2.4e-13 79.7 173 37.0
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 2.0e-12 76.6 112 44.6
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 2.2e-11 73.2 59 71.2
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 5.0e-11 72.0 132 43.2
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.4e-10 70.5 91 37.4
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 3.9e-08 62.4 42 73.8
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 2.0e-07 60.1 155 36.1
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 5.7e-07 58.5 125 40.8
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 7.4e-07 58.2 136 31.6


User provided reference genes

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