Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 9.5e-67 257.3 195 100.0
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 5.7e-64 248.1 195 95.4
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.3e-52 210.3 198 78.3
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.6e-50 202.2 198 81.8
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 4.7e-50 201.8 200 74.0
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 1.4e-49 200.3 112 90.2
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 2.3e-49 199.5 118 88.1
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 3.4e-48 195.7 211 74.9
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 4.4e-48 195.3 199 77.9
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 7.5e-48 194.5 199 76.9
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 9.9e-48 194.1 200 84.0
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 1.3e-47 193.7 200 80.5
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.7e-47 193.4 196 76.0
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.7e-47 193.4 198 78.3
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 3.7e-47 192.2 200 81.0
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 3.7e-47 192.2 112 87.5
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 6.4e-47 191.4 111 87.4
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 8.3e-47 191.0 103 91.3
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 8.3e-47 191.0 103 91.3
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 8.3e-47 191.0 112 86.6
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 8.3e-47 191.0 111 87.4
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 8.3e-47 191.0 200 70.0
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.1e-46 190.7 203 80.8
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.9e-46 189.9 111 86.5
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.9e-46 189.9 112 85.7
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.9e-46 189.9 112 85.7
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 4.1e-46 188.7 112 84.8
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 4.1e-46 188.7 201 79.1
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 7.1e-46 188.0 103 92.2
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 7.1e-46 188.0 118 83.1
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 9.2e-46 187.6 112 82.1
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 1.6e-45 186.8 112 83.9
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 2.1e-45 186.4 112 82.1
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 2.1e-45 186.4 112 82.1
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 2.1e-45 186.4 113 84.1
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 2.1e-45 186.4 113 84.1
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 2.7e-45 186.0 113 83.2
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 4.6e-45 185.3 104 89.4
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 4.6e-45 185.3 111 83.8
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 7.8e-45 184.5 109 86.2
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 7.8e-45 184.5 111 82.9
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 1.0e-44 184.1 112 82.1
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 1.0e-44 184.1 200 75.5
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 1.0e-44 184.1 200 78.5
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.7e-44 183.3 107 86.9
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 1.7e-44 183.3 112 83.0
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.7e-44 183.3 111 82.9
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 3.9e-44 182.2 105 85.7
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 3.9e-44 182.2 105 85.7
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 5.1e-44 181.8 107 85.0
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 1.1e-43 180.6 198 74.2
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 1.1e-43 180.6 104 86.5
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.1e-43 180.6 118 78.0
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 1.1e-43 180.6 111 82.0
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 1.1e-43 180.6 108 83.3
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 1.1e-43 180.6 200 78.0
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 1.5e-43 180.3 108 82.4
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 1.5e-43 180.3 119 79.0
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 1.5e-43 180.3 108 82.4
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 1.9e-43 179.9 107 84.1
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 3.3e-43 179.1 111 81.1
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 4.3e-43 178.7 112 79.5
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 5.6e-43 178.3 118 78.0
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 9.5e-43 177.6 106 83.0
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.2e-42 177.2 202 77.2
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 1.6e-42 176.8 110 80.9
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 1.6e-42 176.8 111 81.1
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 1.6e-42 176.8 112 80.4
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 1.6e-42 176.8 107 84.1
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.1e-42 176.4 106 82.1
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 2.8e-42 176.0 203 76.4
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 3.6e-42 175.6 197 78.2
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 3.6e-42 175.6 142 70.4
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 4.7e-42 175.3 119 78.2
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 6.2e-42 174.9 104 82.7
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 1.1e-41 174.1 119 78.2
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 1.4e-41 173.7 106 79.2
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 1.4e-41 173.7 110 77.3
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.4e-41 173.7 106 80.2
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.1e-41 172.6 103 82.5
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 3.1e-41 172.6 112 78.6
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 4.0e-41 172.2 195 72.3
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 4.0e-41 172.2 102 82.4
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 4.0e-41 172.2 197 72.1
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 5.2e-41 171.8 195 69.2
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 6.8e-41 171.4 112 75.9
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 6.8e-41 171.4 112 75.9
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 1.2e-40 170.6 117 73.5
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.2e-40 170.6 102 83.3
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.5e-40 170.2 106 78.3
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.6e-40 169.5 112 75.0
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 3.4e-40 169.1 106 76.4
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.4e-40 169.1 112 78.6
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 4.4e-40 168.7 196 67.9
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 5.8e-40 168.3 116 73.3
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 9.9e-40 167.5 106 75.5
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 1.3e-39 167.2 116 70.7
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.7e-39 166.8 101 82.2
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.7e-39 166.8 105 77.1
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 2.2e-39 166.4 103 79.6
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 2.9e-39 166.0 165 58.2
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 3.8e-39 165.6 223 71.3
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 3.8e-39 165.6 106 76.4
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 4.9e-39 165.2 101 82.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 4.9e-39 165.2 101 82.2
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 6.4e-39 164.9 104 78.8
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.1e-38 164.1 102 79.4
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-38 163.7 108 75.0
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-38 163.7 108 75.0
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 1.4e-38 163.7 108 75.0
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 1.4e-38 163.7 108 75.0
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.4e-38 162.9 217 59.0
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 5.4e-38 161.8 114 72.8
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 2.1e-37 159.8 106 74.5
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 2.1e-37 159.8 106 74.5
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 4.6e-37 158.7 105 79.0
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.9e-36 155.6 191 50.3
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 2.5e-35 152.9 113 69.9
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 9.6e-35 151.0 188 49.5
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 6.2e-34 148.3 112 66.1
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 6.2e-34 148.3 118 66.9
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 5.2e-33 145.2 117 65.8
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.4e-32 142.5 225 42.7
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 1.3e-31 140.6 83 83.1
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.7e-31 140.2 80 88.8
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 3.2e-30 136.0 124 62.9
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 3.2e-30 136.0 80 85.0
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 5.4e-30 135.2 81 81.5
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 2.1e-29 133.3 71 91.5
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 3.6e-26 122.5 89 73.0
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.4e-25 120.6 83 72.3
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.4e-25 119.8 97 63.9
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 3.8e-23 112.5 69 76.8
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 6.4e-23 111.7 65 83.1
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 6.4e-23 111.7 65 83.1
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 7.9e-21 104.8 81 66.7
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 3.0e-20 102.8 97 62.9
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 4.3e-19 99.0 79 62.0
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 4.3e-19 99.0 139 50.4
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 5.3e-17 92.0 111 54.1
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 1.5e-16 90.5 113 47.8
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 2.0e-16 90.1 62 69.4
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 9.9e-16 87.8 82 57.3
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 4.9e-15 85.5 77 58.4
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 4.9e-15 85.5 77 58.4
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 4.9e-15 85.5 77 58.4
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 9.3e-14 81.3 252 44.8
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.2e-13 80.9 99 52.5
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 1.2e-13 80.9 55 80.0
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 2.1e-13 80.1 140 81.4
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 4.3e-11 72.4 137 71.5
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 9.6e-11 71.2 49 79.6
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 2.8e-10 69.7 34 88.2
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 8.2e-10 68.2 134 77.6
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 1.5e-08 63.9 40 80.0
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 6.5e-07 58.5 35 82.9
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 8.4e-07 58.2 49 65.3
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 1.9e-06 57.0 39 74.4
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 1.9e-06 57.0 38 78.9
MCO01G557 Micromonas commoda HOM05D004131 ORTHO05D004778 4.2e-06 55.8 86 41.9


User provided reference genes

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