Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 5.8e-158 560.8 284 100.0
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 3.0e-146 521.9 271 95.6
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.3e-144 516.5 271 94.1
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.3e-144 516.5 271 94.1
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.8e-144 515.4 271 94.1
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.4e-143 513.1 271 93.4
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.8e-143 512.7 271 93.7
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.4e-143 512.3 269 94.4
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 3.1e-143 511.9 271 93.4
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 5.3e-143 511.1 271 93.0
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 6.9e-143 510.8 271 91.9
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 6.9e-143 510.8 271 93.0
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 1.2e-142 510.0 269 92.9
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 3.4e-142 508.4 271 92.6
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 5.9e-142 507.7 271 91.9
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 5.9e-142 507.7 271 91.5
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 5.9e-142 507.7 271 91.5
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.0e-141 506.9 271 92.3
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.0e-141 506.9 269 92.9
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.3e-141 506.5 271 91.5
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.3e-141 506.5 271 91.1
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 2.2e-141 505.8 271 92.3
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 2.2e-141 505.8 269 92.6
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 2.9e-141 505.4 271 91.5
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 5.0e-141 504.6 270 91.5
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.5e-141 504.2 271 90.4
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.5e-141 504.2 271 91.1
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 8.5e-141 503.8 271 91.5
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.1e-140 503.4 271 90.8
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.1e-140 503.4 271 91.1
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.1e-140 503.4 271 91.5
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 1.4e-140 503.1 271 90.4
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.4e-140 503.1 271 91.1
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.4e-140 503.1 271 91.1
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 2.5e-140 502.3 271 90.8
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.5e-140 502.3 271 91.5
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 3.2e-140 501.9 271 90.4
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 3.2e-140 501.9 271 90.4
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.2e-140 501.9 271 90.4
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 4.2e-140 501.5 271 90.8
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 4.2e-140 501.5 271 90.8
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 7.2e-140 500.7 271 91.1
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 9.4e-140 500.4 271 91.1
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.4e-140 500.4 271 88.9
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 9.4e-140 500.4 271 90.4
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.2e-139 500.0 271 90.8
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.6e-139 499.6 271 90.4
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 1.6e-139 499.6 271 90.0
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 1.6e-139 499.6 271 90.4
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 2.1e-139 499.2 271 90.8
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 2.7e-139 498.8 271 90.4
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 3.6e-139 498.4 271 90.4
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 3.6e-139 498.4 271 90.4
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 4.6e-139 498.0 271 90.0
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.6e-139 498.0 271 89.7
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 4.6e-139 498.0 271 90.8
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 6.1e-139 497.7 271 90.0
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 6.1e-139 497.7 271 89.7
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 7.9e-139 497.3 271 90.0
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.0e-138 496.9 271 90.0
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.0e-138 496.9 271 90.0
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.0e-138 496.9 271 90.0
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 1.0e-138 496.9 269 91.1
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.9e-138 495.0 271 88.6
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.9e-138 495.0 271 88.6
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 5.1e-138 494.6 271 88.6
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 6.7e-138 494.2 271 89.3
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 8.8e-138 493.8 271 88.9
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.1e-137 493.4 271 89.3
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.5e-137 492.3 267 89.9
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.5e-137 492.3 267 89.9
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.5e-137 492.3 267 89.9
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.5e-137 492.3 271 88.9
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.7e-137 491.1 267 89.5
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 1.3e-136 490.0 257 94.2
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.3e-136 490.0 269 89.2
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 2.8e-136 488.8 271 88.6
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.3e-136 487.6 267 88.8
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 6.3e-136 487.6 271 87.8
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 6.3e-136 487.6 271 88.6
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.1e-135 486.9 271 88.2
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.0e-133 480.3 271 86.7
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.3e-133 479.9 271 85.6
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.7e-133 479.6 256 92.6
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 2.2e-133 479.2 271 86.3
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 2.2e-133 479.2 271 86.3
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 2.2e-133 479.2 271 86.3
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.8e-133 478.4 271 86.3
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 5.0e-133 478.0 271 86.0
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 5.0e-133 478.0 271 86.0
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 5.0e-133 478.0 271 86.0
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 5.0e-133 478.0 271 86.0
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 5.0e-133 478.0 271 86.0
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 6.5e-133 477.6 271 86.0
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 6.5e-133 477.6 271 85.6
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.1e-132 476.9 271 85.6
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 1.1e-132 476.9 271 85.6
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.1e-132 476.9 271 86.0
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.1e-132 476.9 271 85.6
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 1.9e-132 476.1 271 86.0
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.9e-132 476.1 271 84.5
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 3.2e-132 475.3 271 85.2
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 4.2e-132 474.9 271 85.6
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 9.4e-132 473.8 271 85.2
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.2e-131 473.4 271 85.2
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 1.2e-131 473.4 271 85.2
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.6e-131 473.0 313 77.6
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.4e-130 469.9 271 84.9
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.8e-130 469.5 271 85.2
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 3.0e-130 468.8 271 87.8
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 5.1e-130 468.0 286 81.5
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 3.3e-129 465.3 252 90.5
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 7.4e-129 464.2 252 89.7
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 7.4e-129 464.2 267 82.8
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.2e-128 462.6 271 83.0
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 8.2e-128 460.7 268 84.0
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.4e-127 459.1 248 89.9
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 7.0e-127 457.6 252 89.3
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 9.1e-127 457.2 265 80.8
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.9e-126 454.5 271 84.5
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 6.5e-125 451.1 268 84.3
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 4.2e-124 448.4 356 69.4
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.5e-124 448.0 267 79.0
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.4e-124 447.2 267 80.1
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 6.1e-123 444.5 267 79.0
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.0e-122 443.7 252 85.7
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 1.0e-122 443.7 238 91.6
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 1.5e-121 439.9 251 86.1
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 7.5e-121 437.6 314 73.6
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.7e-120 436.4 234 91.9
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 6.3e-120 434.5 271 81.9
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 8.0e-115 417.5 297 73.1
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.4e-114 416.8 251 83.3
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 6.3e-112 407.9 263 73.8
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 2.2e-109 399.4 216 90.7
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.5e-108 396.7 227 85.5
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 1.2e-105 387.1 201 94.5
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.4e-105 385.2 201 95.0
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.4e-105 385.2 201 95.0
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.1e-95 354.0 273 66.3
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 4.1e-95 352.1 271 68.6
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.2e-94 350.5 268 62.7
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.0e-85 320.9 265 57.4
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 8.9e-82 307.8 282 58.2
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 9.8e-81 304.3 174 81.0
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 4.3e-36 156.0 180 55.6
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 5.0e-32 142.5 79 87.3
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 1.8e-26 124.0 74 82.4
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 1.1e-23 114.8 59 89.8
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 7.9e-22 108.6 78 70.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 7.4e-12 75.5 97 48.5
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 7.4e-12 75.5 56 71.4
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 2.4e-10 70.5 43 76.7
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 7.0e-10 68.9 60 61.7
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 7.0e-10 68.9 60 61.7
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.6e-09 67.8 100 43.0
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 4.5e-09 66.2 36 86.1
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.2e-06 58.2 129 34.9


User provided reference genes

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