Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 8.4e-128 460.3 222 100.0
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.9e-56 222.6 218 55.0
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.2e-49 200.7 208 51.9
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.7e-48 196.8 219 49.8
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 6.2e-38 161.8 202 47.0
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.8e-37 160.2 206 45.6
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 1.3e-35 154.1 202 45.0
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.9e-35 152.9 202 46.5
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 4.1e-34 149.1 222 41.9
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 9.2e-34 147.9 208 44.2
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 2.3e-32 143.3 213 42.3
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 6.6e-32 141.7 223 40.8
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 1.5e-31 140.6 198 43.4
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.9e-31 140.2 222 41.4
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 4.3e-31 139.0 217 41.9
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 4.3e-31 139.0 202 42.1
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 5.6e-31 138.7 151 49.0
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 6.2e-30 135.2 221 38.5
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 8.1e-30 134.8 222 40.1
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 3.8e-27 125.9 224 38.8
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.2e-26 121.3 218 38.1
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 6.0e-25 118.6 213 37.1
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 6.0e-25 118.6 202 40.6
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 6.0e-25 118.6 202 40.6
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-24 117.9 218 37.6
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.3e-24 116.7 217 35.5
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 5.1e-24 115.5 201 39.8
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 5.6e-23 112.1 201 37.8
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 7.3e-23 111.7 206 37.9
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 9.6e-23 111.3 225 38.7
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-22 110.9 201 37.3
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 2.1e-22 110.2 188 37.8
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-22 110.2 211 36.0
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.6e-22 109.4 204 35.8
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.7e-22 109.0 190 38.4
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.7e-22 109.0 206 34.0
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 1.4e-21 107.5 188 37.2
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 2.4e-21 106.7 181 38.7
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.4e-21 106.7 208 37.0
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.1e-21 106.3 170 38.2
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 3.1e-21 106.3 206 35.9
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 5.8e-20 102.1 223 35.9
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 1.7e-19 100.5 196 35.7
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 1.7e-19 100.5 152 42.8
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.9e-19 99.8 150 42.7
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-19 99.8 206 35.4
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 4.9e-19 99.0 164 39.0
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 4.9e-19 99.0 164 39.0
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 6.4e-19 98.6 231 35.1
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.4e-19 98.2 172 36.6
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.1e-18 97.8 213 31.5
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 2.4e-18 96.7 213 31.0
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 2.4e-18 96.7 213 31.0
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.2e-18 95.9 181 37.0
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-17 94.0 187 35.8
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.7e-16 90.5 218 32.1
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 3.0e-16 89.7 199 32.2
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.0e-16 89.7 169 36.1
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.9e-16 89.4 156 36.5
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 6.6e-16 88.6 197 33.5
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 1.5e-15 87.4 138 41.3
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 1.5e-15 87.4 170 35.3
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 5.6e-15 85.5 162 36.4
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 7.3e-15 85.1 185 34.1
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 7.3e-15 85.1 199 31.2
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 9.6e-15 84.7 138 40.6
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.6e-15 84.7 207 32.9
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.3e-14 84.3 137 38.7
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-14 84.3 138 40.6
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 1.6e-14 84.0 200 31.5
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-14 83.6 212 31.6
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-14 83.6 195 34.4
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.8e-14 83.2 184 32.6
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 2.8e-14 83.2 200 31.5
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 4.8e-14 82.4 200 30.5
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.8e-14 82.4 135 40.7
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 4.8e-14 82.4 135 40.7
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-13 81.3 138 39.1
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-13 80.9 197 32.0
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 2.4e-13 80.1 195 34.9
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.1e-13 79.7 170 35.3
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.0e-13 79.3 186 33.9
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 5.3e-13 79.0 147 36.7
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.9e-13 78.6 186 33.3
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-12 77.0 135 40.0
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-12 77.0 135 40.0
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.4e-12 76.3 196 31.1
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.5e-12 75.9 185 30.8
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 4.5e-12 75.9 147 35.4
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.3e-11 74.3 176 33.0
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 1.3e-11 74.3 190 30.5
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.7e-11 73.9 115 40.0
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 2.2e-11 73.6 170 34.1
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.9e-11 72.4 150 36.0
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 1.1e-10 71.2 157 31.8
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 1.1e-10 71.2 154 36.4
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-10 70.9 225 28.0
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-10 70.9 185 29.7
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.4e-10 70.9 189 33.9
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.4e-10 70.9 189 33.9
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 1.9e-10 70.5 124 35.5
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 2.4e-10 70.1 172 32.6
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 3.2e-10 69.7 168 32.7
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.2e-10 69.7 164 33.5
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.2e-10 69.3 100 41.0
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 4.2e-10 69.3 172 32.6
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 4.2e-10 69.3 164 29.3
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 9.3e-10 68.2 115 38.3
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-09 67.0 196 31.6
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.5e-09 66.2 154 35.1
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 4.6e-09 65.9 166 30.1
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 1.0e-08 64.7 169 32.0
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 1.3e-08 64.3 169 32.0
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.8e-08 63.9 78 46.2
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.0e-08 63.2 137 35.0
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 5.1e-08 62.4 165 28.5
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.1e-08 62.4 170 31.2
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.7e-08 61.6 88 40.9
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-07 61.2 109 33.9
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 1.5e-07 60.8 164 29.3
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-07 60.5 99 37.4
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 9.6e-07 58.2 94 42.6
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 1.3e-06 57.8 194 28.4


User provided reference genes

Program Settings