Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.1e-35 151.8 74 100.0
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 1.5e-25 119.0 59 100.0
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 3.0e-21 104.8 57 91.2
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 1.1e-20 102.8 57 86.0
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 1.5e-20 102.4 68 72.1
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 1.5e-20 102.4 58 84.5
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 4.3e-20 100.9 57 86.0
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 4.3e-20 100.9 58 84.5
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 5.6e-20 100.5 57 84.2
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 7.3e-20 100.1 55 90.9
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 7.3e-20 100.1 57 84.2
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 7.3e-20 100.1 57 84.2
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 7.3e-20 100.1 52 92.3
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 9.6e-20 99.8 57 84.2
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 1.6e-19 99.0 57 84.2
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 1.6e-19 99.0 57 84.2
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 1.6e-19 99.0 58 82.8
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 2.1e-19 98.6 57 84.2
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 2.8e-19 98.2 57 84.2
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 3.6e-19 97.8 61 80.3
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 3.6e-19 97.8 57 82.5
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 3.6e-19 97.8 57 80.7
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 3.6e-19 97.8 55 85.5
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 4.8e-19 97.4 55 83.6
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 4.8e-19 97.4 55 83.6
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 6.2e-19 97.1 56 82.1
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 6.2e-19 97.1 58 81.0
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 8.1e-19 96.7 56 82.1
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 1.1e-18 96.3 55 85.5
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 1.1e-18 96.3 57 82.5
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 1.1e-18 96.3 57 82.5
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.1e-18 96.3 59 81.4
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 1.1e-18 96.3 76 67.1
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 1.4e-18 95.9 55 81.8
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.4e-18 95.9 55 81.8
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 1.4e-18 95.9 57 82.5
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 1.4e-18 95.9 57 82.5
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 1.4e-18 95.9 51 88.2
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 1.4e-18 95.9 55 85.5
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 1.4e-18 95.9 56 82.1
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 1.8e-18 95.5 58 81.0
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 1.8e-18 95.5 74 63.5
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 2.4e-18 95.1 60 80.0
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 3.1e-18 94.7 51 88.2
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 3.1e-18 94.7 57 78.9
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 3.1e-18 94.7 56 80.4
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 3.1e-18 94.7 57 80.7
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 4.0e-18 94.4 55 85.5
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 4.0e-18 94.4 56 80.4
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 4.0e-18 94.4 56 80.4
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 4.0e-18 94.4 55 81.8
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 5.3e-18 94.0 58 81.0
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 5.3e-18 94.0 58 77.6
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 5.3e-18 94.0 57 78.9
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 5.3e-18 94.0 55 85.5
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 6.9e-18 93.6 69 71.0
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 6.9e-18 93.6 57 80.7
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 6.9e-18 93.6 58 81.0
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 6.9e-18 93.6 61 75.4
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 6.9e-18 93.6 57 84.2
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 6.9e-18 93.6 57 84.2
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 9.0e-18 93.2 55 85.5
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 9.0e-18 93.2 57 78.9
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 1.2e-17 92.8 52 82.7
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 1.2e-17 92.8 61 75.4
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 1.2e-17 92.8 58 77.6
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 1.2e-17 92.8 66 72.7
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 2.6e-17 91.7 55 80.0
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 3.4e-17 91.3 57 77.2
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 3.4e-17 91.3 61 73.8
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 4.5e-17 90.9 57 77.2
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 4.5e-17 90.9 58 79.3
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 4.5e-17 90.9 58 79.3
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 4.5e-17 90.9 59 78.0
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 4.5e-17 90.9 55 80.0
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 5.8e-17 90.5 55 81.8
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 7.6e-17 90.1 47 91.5
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 9.9e-17 89.7 57 73.7
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 1.3e-16 89.4 55 78.2
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 1.7e-16 89.0 55 80.0
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 2.9e-16 88.2 58 74.1
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 4.9e-16 87.4 55 78.2
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 8.4e-16 86.7 55 78.2
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 8.4e-16 86.7 57 73.7
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 1.4e-15 85.9 56 75.0
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 1.4e-15 85.9 55 76.4
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 1.4e-15 85.9 56 75.0
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 1.4e-15 85.9 55 78.2
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 1.4e-15 85.9 65 69.2
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 1.9e-15 85.5 55 76.4
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 1.9e-15 85.5 55 76.4
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 1.9e-15 85.5 55 76.4
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 3.2e-15 84.7 51 80.4
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 4.2e-15 84.3 55 76.4
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 4.2e-15 84.3 55 74.5
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 4.2e-15 84.3 55 76.4
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 4.2e-15 84.3 55 76.4
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 5.4e-15 84.0 57 73.7
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 5.4e-15 84.0 55 74.5
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 7.1e-15 83.6 58 74.1
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 9.3e-15 83.2 58 69.0
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 6.0e-14 80.5 42 90.5
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 3.9e-13 77.8 42 85.7
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 1.5e-12 75.9 38 94.7
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 4.3e-12 74.3 60 61.7
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 5.6e-12 73.9 55 70.9
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 3.4e-09 64.7 53 62.3
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 2.2e-08 62.0 46 65.2
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 6.5e-08 60.5 45 64.4


User provided reference genes

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