Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028294 Camellia sinensis var. sinensis HOM05D001298 ORTHO05D001110 8.0e-35 149.8 73 100.0
Actinidia40157 Actinidia chinensis HOM05D001298 ORTHO05D001110 3.8e-29 131.0 67 92.5
Rhsim04G0203600 Rhododendron simsii HOM05D001298 ORTHO05D001110 1.1e-28 129.4 73 84.9
DCAR_027179 Daucus carota HOM05D001298 ORTHO05D001110 4.2e-28 127.5 67 92.5
Migut.N00159 Erythranthe guttata HOM05D001298 ORTHO05D001110 8.0e-27 123.2 67 89.6
Lj6A573T93 Lonicera japonica HOM05D001298 ORTHO05D001110 8.0e-27 123.2 67 89.6
Lj6A576T58 Lonicera japonica HOM05D001298 ORTHO05D001110 8.0e-27 123.2 67 89.6
CAN.G69.21 Capsicum annuum HOM05D001298 ORTHO05D001110 1.8e-26 122.1 67 88.1
Solyc01g079820.3 Solanum lycopersicum HOM05D001298 ORTHO05D001110 1.8e-26 122.1 67 89.6
Sopen01g031580 Solanum pennellii HOM05D001298 ORTHO05D001110 1.8e-26 122.1 67 89.6
PGSC0003DMG400008994 Solanum tuberosum HOM05D001298 ORTHO05D001110 1.8e-26 122.1 67 89.6
MSTRG.24754 Avicennia marina HOM05D001298 ORTHO05D001110 4.0e-26 120.9 67 88.1
Nitab4.5_0000630g0060 Nicotiana tabacum HOM05D001298 ORTHO05D001110 8.8e-26 119.8 67 88.1
Nitab4.5_0000968g0010 Nicotiana tabacum HOM05D001298 ORTHO05D001110 8.8e-26 119.8 67 88.1
Dinv44494 Davidia involucrata HOM05D001298 ORTHO05D001110 1.2e-25 119.4 67 86.6
Hma1.2p1_0511F.1_g168990 Hydrangea macrophylla HOM05D001298 ORTHO05D001110 2.0e-25 118.6 67 86.6
Cc03_g03290 Coffea canephora HOM05D001298 ORTHO05D001110 3.4e-25 117.9 67 85.1
Peaxi162Scf01336g00018 Petunia axillaris HOM05D001298 ORTHO05D001110 4.4e-25 117.5 67 85.1
unitig_749.g13402 Utricularia gibba HOM05D001298 ORTHO05D001110 4.4e-25 117.5 66 86.4
FvH4_4g14840 Fragaria vesca HOM05D001298 ORTHO05D001110 7.5e-25 116.7 73 78.1
FAN07G2278 Fragaria x ananassa HOM05D001298 ORTHO05D001110 7.5e-25 116.7 73 78.1
FAN12G0254 Fragaria x ananassa HOM05D001298 ORTHO05D001110 7.5e-25 116.7 73 78.1
FAN17G1335 Fragaria x ananassa HOM05D001298 ORTHO05D001110 7.5e-25 116.7 73 78.1
MD13G1185800 Malus domestica HOM05D001298 ORTHO05D001110 7.5e-25 116.7 67 83.6
MD16G1186600 Malus domestica HOM05D001298 ORTHO05D001110 7.5e-25 116.7 67 83.6
SalBow5G2912 Salvia bowleyana HOM05D001298 ORTHO05D001110 7.5e-25 116.7 67 85.1
SalBow5G3279 Salvia bowleyana HOM05D001298 ORTHO05D001110 7.5e-25 116.7 67 85.1
AUR62038194 Chenopodium quinoa HOM05D001298 ORTHO05D001110 1.3e-24 115.9 67 85.1
Nn4g26226 Nelumbo nucifera HOM05D001298 ORTHO05D001110 1.3e-24 115.9 67 83.6
Aqoxy2G03300 Aquilegia oxysepala HOM05D001298 ORTHO05D001110 1.7e-24 115.5 67 83.6
Prupe.1G153400 Prunus persica HOM05D001298 ORTHO05D001110 2.2e-24 115.2 73 76.7
RcHm_v2.0_Chr4g0417491 Rosa chinensis HOM05D001298 ORTHO05D001110 2.2e-24 115.2 73 76.7
TAR636G0563 Trochodendron aralioides HOM05D001298 ORTHO05D001110 2.2e-24 115.2 63 85.7
Oeu030325.1 Olea europaea HOM05D001298 ORTHO05D001110 2.8e-24 114.8 68 83.8
GSVIVG01017908001 Vitis vinifera HOM05D001298 ORTHO05D001110 2.8e-24 114.8 67 83.6
AUR62038066 Chenopodium quinoa HOM05D001298 ORTHO05D001110 3.7e-24 114.4 67 83.6
Sc19g0004410 Simmondsia chinensis HOM05D001298 ORTHO05D001110 3.7e-24 114.4 73 75.3
EL10As3g23297 Beta vulgaris HOM05D001298 ORTHO05D001110 6.3e-24 113.6 67 83.6
HanXRQChr12g0359601 Helianthus annuus HOM05D001298 ORTHO05D001110 6.3e-24 113.6 67 80.6
PSO170G6057 Papaver somniferum HOM05D001298 ORTHO05D001110 8.3e-24 113.2 67 82.1
Ah.09g228400 Amaranthus hybridus HOM05D001298 ORTHO05D001110 1.1e-23 112.8 68 79.4
COL.COLO4_20848 Corchorus olitorius HOM05D001298 ORTHO05D001110 1.1e-23 112.8 67 83.6
RcHm_v2.0_Chr4g0417421 Rosa chinensis HOM05D001298 ORTHO05D001110 1.4e-23 112.5 73 75.3
Atru.chr4.2534 Acer truncatum HOM05D001298 ORTHO05D001110 1.8e-23 112.1 67 80.6
Ciclev10005822m.g Citrus clementina HOM05D001298 ORTHO05D001110 1.8e-23 112.1 67 82.1
Sabra19G0033900 Salix brachista HOM05D001298 ORTHO05D001110 2.4e-23 111.7 67 80.6
Lsat_1_v5_gn_5_73880 Lactuca sativa HOM05D001298 ORTHO05D001110 3.1e-23 111.3 67 79.1
Manes.03G182500 Manihot esculenta HOM05D001298 ORTHO05D001110 4.1e-23 110.9 67 79.1
PSO302G0118 Papaver somniferum HOM05D001298 ORTHO05D001110 4.1e-23 110.9 67 80.6
TWI53G1300 Tripterygium wilfordii HOM05D001298 ORTHO05D001110 4.1e-23 110.9 67 79.1
CANSAT78G0642 Cannabis sativa HOM05D001298 ORTHO05D001110 5.4e-23 110.5 67 79.1
CDE02G1984 Ceratophyllum demersum HOM05D001298 ORTHO05D001110 5.4e-23 110.5 66 80.3
Gohir.A10G124400 Gossypium hirsutum HOM05D001298 ORTHO05D001110 5.4e-23 110.5 67 82.1
Gohir.D10G141900 Gossypium hirsutum HOM05D001298 ORTHO05D001110 5.4e-23 110.5 67 82.1
TAR365G0327 Trochodendron aralioides HOM05D001298 ORTHO05D001110 7.0e-23 110.2 67 80.6
SEGI_26001 Sequoiadendron giganteum HOM05D001298 ORTHO05D001110 9.1e-23 109.8 67 77.6
arahy.Tifrunner.gnm1.ann1.FJN7R5 Arachis hypogaea HOM05D001298 ORTHO05D001110 1.2e-22 109.4 67 80.6
Os01g0266600 Oryza sativa ssp. japonica HOM05D001298 ORTHO05D001110 1.2e-22 109.4 67 77.6
Potri.019G024000 Populus trichocarpa HOM05D001298 ORTHO05D001110 1.2e-22 109.4 67 79.1
PGR142G2799 Punica granatum HOM05D001298 ORTHO05D001110 1.2e-22 109.4 67 80.6
Cpa.g.sc147.19 Carica papaya HOM05D001298 ORTHO05D001110 1.6e-22 109.0 67 79.1
Duzib151G1052 Durio zibethinus HOM05D001298 ORTHO05D001110 1.6e-22 109.0 67 80.6
Gorai.011G158200 Gossypium raimondii HOM05D001298 ORTHO05D001110 1.6e-22 109.0 67 80.6
Thecc.04G225000 Theobroma cacao HOM05D001298 ORTHO05D001110 2.0e-22 108.6 67 80.6
arahy.Tifrunner.gnm1.ann1.2N9FFP Arachis hypogaea HOM05D001298 ORTHO05D001110 3.5e-22 107.8 67 79.1
Ca_00630_v3 Cicer arietinum L. HOM05D001298 ORTHO05D001110 3.5e-22 107.8 67 77.6
Thhalv10021549m.g Eutrema salsugineum HOM05D001298 ORTHO05D001110 3.5e-22 107.8 73 72.6
Glyma.13G207000 Glycine max HOM05D001298 ORTHO05D001110 3.5e-22 107.8 67 79.1
Glyma.15G105600 Glycine max HOM05D001298 ORTHO05D001110 3.5e-22 107.8 67 79.1
Lj6g0011312 Lotus japonicus HOM05D001298 ORTHO05D001110 3.5e-22 107.8 67 79.1
Phvul.006G151800 Phaseolus vulgaris HOM05D001298 ORTHO05D001110 3.5e-22 107.8 67 79.1
Sp3g05000 Schrenkiella parvula HOM05D001298 ORTHO05D001110 3.5e-22 107.8 73 72.6
VMungo0540G1628 Vigna mungo HOM05D001298 ORTHO05D001110 3.5e-22 107.8 67 79.1
THA.LOC104802755 Tarenaya hassleriana HOM05D001298 ORTHO05D001110 4.5e-22 107.5 67 79.1
FAN04G0440 Fragaria x ananassa HOM05D001298 ORTHO05D001110 5.9e-22 107.1 67 80.6
Lalb_Chr18g0056191 Lupinus albus HOM05D001298 ORTHO05D001110 5.9e-22 107.1 67 76.1
Medtr2g022660 Medicago truncatula HOM05D001298 ORTHO05D001110 7.7e-22 106.7 67 77.6
TPR.G7650 Trifolium pratense HOM05D001298 ORTHO05D001110 7.7e-22 106.7 67 77.6
arahy.Tifrunner.gnm1.ann1.QS5V0D Arachis hypogaea HOM05D001298 ORTHO05D001110 1.0e-21 106.3 67 79.1
Aa31LG5G16540 Aethionema arabicum HOM05D001298 ORTHO05D001110 1.3e-21 105.9 67 77.6
Carub.0003s0549 Capsella rubella HOM05D001298 ORTHO05D001110 1.3e-21 105.9 67 77.6
Eucgr.B01112 Eucalyptus grandis HOM05D001298 ORTHO05D001110 1.3e-21 105.9 67 79.1
THA.LOC104818807 Tarenaya hassleriana HOM05D001298 ORTHO05D001110 1.3e-21 105.9 67 79.1
Cfa009359 Carpinus fangiana HOM05D001298 ORTHO05D001110 1.7e-21 105.5 67 79.1
Haze_12404 Corylus avellana HOM05D001298 ORTHO05D001110 1.7e-21 105.5 67 79.1
Psat1g182960 Pisum sativum HOM05D001298 ORTHO05D001110 2.3e-21 105.1 67 76.1
AL3G16890 Arabidopsis lyrata HOM05D001298 ORTHO05D001110 2.9e-21 104.8 67 76.1
AL831U10010 Arabidopsis lyrata HOM05D001298 ORTHO05D001110 2.9e-21 104.8 67 76.1
AT3G06050 Arabidopsis thaliana HOM05D001298 ORTHO05D001110 2.9e-21 104.8 67 76.1
BcaC05g30062 Brassica carinata HOM05D001298 ORTHO05D001110 2.9e-21 104.8 67 76.1
A05p41950 Brassica napus HOM05D001298 ORTHO05D001110 2.9e-21 104.8 67 76.1
C05p61200 Brassica napus HOM05D001298 ORTHO05D001110 2.9e-21 104.8 67 76.1
BolC5t34780H Brassica oleracea HOM05D001298 ORTHO05D001110 2.9e-21 104.8 67 76.1
BraA05t22917Z Brassica rapa HOM05D001298 ORTHO05D001110 2.9e-21 104.8 67 76.1
CARHR080550 Cardamine hirsuta HOM05D001298 ORTHO05D001110 2.9e-21 104.8 67 76.1
SGA_v2.0_scaffold166G38365 Striga asiatica HOM05D002130 ORTHO05D001110 2.9e-21 104.8 56 87.5
MELO3C021410.2 Cucumis melo HOM05D001298 ORTHO05D001110 3.8e-21 104.4 67 74.6
CsaV3_6G015110 Cucumis sativus L. HOM05D001298 ORTHO05D001110 3.8e-21 104.4 67 74.6
CiPaw.02G093700 Carya illinoinensis HOM05D001298 ORTHO05D001110 5.0e-21 104.0 67 76.1
QL06p003739 Quercus lobata HOM05D001298 ORTHO05D001110 6.6e-21 103.6 66 77.3
Sed0023718 Sechium edule HOM05D001298 ORTHO05D001110 8.6e-21 103.2 67 73.1
ClCG06G005880 Citrullus lanatus HOM05D001298 ORTHO05D001110 1.1e-20 102.8 67 73.1
ECA234G0450 Erigeron canadensis HOM05D001298 ORTHO05D002937 3.3e-20 101.3 66 71.2
CiPaw.01G161700 Carya illinoinensis HOM05D001298 ORTHO05D001110 9.5e-20 99.8 73 69.9
Mapoly0023s0016 Marchantia polymorpha HOM05D001298 ORTHO05D001110 4.7e-19 97.4 68 67.6
ATR0626G353 Amborella trichopoda HOM05D001298 ORTHO05D001110 4.0e-18 94.4 67 67.2
SMO367G1092 Selaginella moellendorffii HOM05D001298 ORTHO05D001110 2.6e-17 91.7 72 62.5
CBR_g11993 Chara braunii HOM05D001298 ORTHO05D001110 7.5e-17 90.1 64 67.2
Phvul.006G151701 Phaseolus vulgaris HOM05D001298 ORTHO05D001110 1.7e-16 89.0 67 68.7
Pp3c11_23160 Physcomitrium patens HOM05D001298 ORTHO05D001110 1.1e-15 86.3 64 62.5
Glyma.13G206900 Glycine max HOM05D001298 ORTHO05D001110 1.4e-15 85.9 67 67.2
VMungo0540G1766 Vigna mungo HOM05D001298 ORTHO05D001110 4.1e-15 84.3 67 65.7
CSS0049870 Camellia sinensis var. sinensis HOM05D001298 ORTHO05D001110 8.6e-13 76.6 76 57.9
CSS0038829 Camellia sinensis var. sinensis HOM05D001298 ORTHO05D001110 2.5e-12 75.1 76 53.9
HPP92_003558 Vanilla planifolia HOM05D001298 ORTHO05D001110 2.7e-06 55.1 33 72.7


User provided reference genes

Program Settings