Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028290 Camellia sinensis var. sinensis HOM05D005366 ORTHO05D006323 0.0e+00 1313.5 722 100.0
CSS0043382 Camellia sinensis var. sinensis HOM05D005366 ORTHO05D006323 6.0e-284 980.7 888 69.4
Actinidia06431 Actinidia chinensis HOM05D005366 ORTHO05D006323 4.4e-210 735.3 888 54.6
vmacro00028 Vaccinium macrocarpon HOM05D005366 ORTHO05D006323 3.0e-190 669.5 888 49.4
Rhsim11G0005000 Rhododendron simsii HOM05D005366 ORTHO05D006323 2.1e-183 646.7 888 49.0
Dinv04518 Davidia involucrata HOM05D005366 ORTHO05D006323 3.4e-178 629.4 888 48.0
QL12p025430 Quercus lobata HOM05D005366 ORTHO05D006323 1.3e-150 537.7 888 42.6
CiPaw.07G211400 Carya illinoinensis HOM05D005366 ORTHO05D006323 1.4e-144 517.7 882 41.2
MD15G1106500 Malus domestica HOM05D005366 ORTHO05D006323 5.5e-144 515.8 885 41.1
Thecc.09G008500 Theobroma cacao HOM05D005366 ORTHO05D006323 1.6e-143 514.2 873 40.9
GSVIVG01033178001 Vitis vinifera HOM05D005366 ORTHO05D006323 5.7e-141 505.8 890 39.8
Prupe.1G459000 Prunus persica HOM05D005366 ORTHO05D006323 1.3e-140 504.6 888 40.7
Atru.chr7.2660 Acer truncatum HOM05D005366 ORTHO05D006323 8.5e-137 491.9 860 41.7
Lj7C748G6 Lonicera japonica HOM05D005366 ORTHO05D006323 1.9e-136 490.7 882 41.4
Gohir.D07G002400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 1.2e-135 488.0 876 38.4
Gorai.001G002300 Gossypium raimondii HOM05D005366 ORTHO05D006323 2.3e-134 483.8 876 38.2
Potri.018G008600 Populus trichocarpa HOM05D005366 ORTHO05D006323 2.3e-134 483.8 876 38.4
Ciclev10007223m.g Citrus clementina HOM05D005366 ORTHO05D006323 6.3e-132 475.7 884 41.0
Gohir.A07G002100 Gossypium hirsutum HOM05D005366 ORTHO05D006323 8.2e-132 475.3 876 39.5
Manes.16G134600 Manihot esculenta HOM05D005366 ORTHO05D006323 4.2e-128 463.0 878 38.3
TWI63G1827 Tripterygium wilfordii HOM05D005366 ORTHO05D006323 5.5e-128 462.6 894 38.6
Oeu053860.1 Olea europaea HOM05D005366 ORTHO05D006323 6.1e-127 459.1 929 36.8
RcHm_v2.0_Chr6g0305121 Rosa chinensis HOM05D005366 ORTHO05D006323 1.1e-125 454.9 871 39.7
CANSAT25G3462 Cannabis sativa HOM05D005366 ORTHO05D006323 4.4e-125 453.0 875 37.1
Gohir.A05G063400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 4.4e-125 453.0 884 37.7
Gorai.009G066800 Gossypium raimondii HOM05D005366 ORTHO05D006323 1.7e-124 451.1 879 37.7
TAR625G1380 Trochodendron aralioides HOM05D005366 ORTHO05D006323 6.3e-124 449.1 812 40.3
Nitab4.5_0008193g0020 Nicotiana tabacum HOM05D005366 ORTHO05D006323 2.4e-123 447.2 874 37.5
RcHm_v2.0_Chr6g0305291 Rosa chinensis HOM05D005366 ORTHO05D006323 1.2e-122 444.9 797 39.3
Gohir.D05G066000 Gossypium hirsutum HOM05D005366 ORTHO05D006323 2.6e-122 443.7 884 37.1
CAN.G673.20 Capsicum annuum HOM05D005366 ORTHO05D006323 1.9e-120 437.6 862 37.1
Solyc08g006420.3 Solanum lycopersicum HOM05D005366 ORTHO05D006323 1.9e-120 437.6 863 37.3
Sopen08g002360 Solanum pennellii HOM05D005366 ORTHO05D006323 2.1e-119 434.1 862 37.1
Nitab4.5_0000555g0160 Nicotiana tabacum HOM05D005366 ORTHO05D006323 2.7e-119 433.7 862 37.4
Peaxi162Scf00045g00173 Petunia axillaris HOM05D005366 ORTHO05D006323 3.9e-118 429.9 897 37.3
MSTRG.25794 Avicennia marina HOM05D005366 ORTHO05D006323 5.2e-118 429.5 865 37.2
COL.COLO4_30023 Corchorus olitorius HOM05D005366 ORTHO05D006323 5.2e-118 429.5 837 37.4
Duzib168G0091 Durio zibethinus HOM05D005366 ORTHO05D006323 8.8e-118 428.7 884 38.5
SalBow4G0033 Salvia bowleyana HOM05D005366 ORTHO05D006323 1.1e-115 421.8 866 38.0
Aqoxy7G02854 Aquilegia oxysepala HOM05D005366 ORTHO05D006323 3.1e-115 420.2 850 36.6
Lj5g0008306 Lotus japonicus HOM05D005366 ORTHO05D006323 9.1e-115 418.7 878 37.8
Psat0s839g0040 Pisum sativum HOM05D005366 ORTHO05D006323 1.0e-113 415.2 883 35.4
FAN20G2855 Fragaria x ananassa HOM05D005366 ORTHO05D006323 3.8e-113 413.3 885 36.5
Phvul.001G060300 Phaseolus vulgaris HOM05D005366 ORTHO05D006323 7.2e-112 409.1 863 35.8
VMungo0647G1874 Vigna mungo HOM05D005366 ORTHO05D006323 1.2e-111 408.3 827 36.4
FvH4_2g36740 Fragaria vesca HOM05D005366 ORTHO05D006323 8.0e-111 405.6 883 35.4
FAN27G2425 Fragaria x ananassa HOM05D005366 ORTHO05D006323 2.3e-110 404.1 883 35.4
Medtr1g009610 Medicago truncatula HOM05D005366 ORTHO05D006323 6.8e-110 402.5 874 34.8
Nn8g40726 Nelumbo nucifera HOM05D005366 ORTHO05D006323 1.5e-109 401.4 894 35.9
FAN15G0510 Fragaria x ananassa HOM05D005366 ORTHO05D006323 5.7e-109 399.4 869 37.4
Glyma.17G197200 Glycine max HOM05D005366 ORTHO05D006323 1.7e-108 397.9 832 35.8
ECA240G0683 Erigeron canadensis HOM05D005366 ORTHO05D006323 2.8e-108 397.1 880 35.3
PGR119G1611 Punica granatum HOM05D005366 ORTHO05D006323 1.1e-107 395.2 887 35.9
Sed0008947 Sechium edule HOM05D005366 ORTHO05D006323 7.0e-107 392.5 875 33.7
DCAR_000688 Daucus carota HOM05D005366 ORTHO05D006323 2.7e-106 390.6 902 34.6
Cc08_g06500 Coffea canephora HOM05D005366 ORTHO05D006323 1.0e-105 388.7 873 36.1
TPR.G12019 Trifolium pratense HOM05D005366 ORTHO05D006323 1.0e-105 388.7 860 38.0
TPR.G21359 Trifolium pratense HOM05D005366 ORTHO05D006323 1.2e-103 381.7 860 35.2
CsaV3_3G047150 Cucumis sativus L. HOM05D005366 ORTHO05D006323 2.1e-103 380.9 874 33.5
Glyma.14G135900 Glycine max HOM05D005366 ORTHO05D006323 2.7e-103 380.6 832 35.0
HanXRQChr03g0082501 Helianthus annuus HOM05D005366 ORTHO05D006323 6.1e-103 379.4 862 34.8
EL10Ac2g02416 Beta vulgaris HOM05D005366 ORTHO05D006323 8.8e-102 375.6 917 33.9
COL.COLO4_19020 Corchorus olitorius HOM05D005366 ORTHO05D006323 4.9e-100 369.8 799 35.5
AUR62037714 Chenopodium quinoa HOM05D005366 ORTHO05D006323 2.4e-99 367.5 889 35.0
Ca_01524_v3 Cicer arietinum L. HOM05D005366 ORTHO05D006323 7.0e-99 365.9 835 34.4
MD08G1126800 Malus domestica HOM05D005366 ORTHO05D006323 2.1e-95 354.4 583 41.2
MELO3C003621.2 Cucumis melo HOM05D005366 ORTHO05D006323 4.0e-94 350.1 874 31.8
AUR62020289 Chenopodium quinoa HOM05D005366 ORTHO05D006323 8.9e-94 349.0 805 35.0
BcaNung04128 Brassica carinata HOM05D005366 ORTHO05D006323 4.4e-93 346.7 857 33.5
Sp7g29400 Schrenkiella parvula HOM05D005366 ORTHO05D006323 5.7e-93 346.3 848 33.6
Ah.12g061220 Amaranthus hybridus HOM05D005366 ORTHO05D006323 3.7e-92 343.6 885 33.3
unitig_32.g11652 Utricularia gibba HOM05D005366 ORTHO05D006323 8.3e-92 342.4 809 33.7
PSO170G4550 Papaver somniferum HOM05D005366 ORTHO05D006323 1.1e-91 342.0 800 33.8
PSO063G0316 Papaver somniferum HOM05D005366 ORTHO05D006323 1.8e-91 341.3 800 33.8
Sc06g0000200 Simmondsia chinensis HOM05D005366 ORTHO05D006323 4.1e-91 340.1 843 33.7
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 5.4e-91 339.7 848 32.9
Thhalv10024180m.g Eutrema salsugineum HOM05D005366 ORTHO05D006323 5.4e-91 339.7 847 34.4
Lalb_Chr22g0361211 Lupinus albus HOM05D005366 ORTHO05D006323 9.2e-91 339.0 878 31.8
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 2.0e-90 337.8 848 32.8
CARHR239450 Cardamine hirsuta HOM05D005366 ORTHO05D006323 2.1e-87 327.8 853 34.1
AL7G20470 Arabidopsis lyrata HOM05D005366 ORTHO05D006323 6.1e-87 326.2 848 34.1
C01p07430 Brassica napus HOM05D005366 ORTHO05D006323 6.4e-84 316.2 848 31.8
MBI16_g05842_MAGBIO Magnolia biondii HOM05D005366 ORTHO05D006323 3.2e-83 313.9 890 34.3
BolC1t00725H Brassica oleracea HOM05D005366 ORTHO05D006323 5.4e-83 313.2 848 32.3
BcaNung01513 Brassica carinata HOM05D005366 ORTHO05D006323 7.0e-83 312.8 849 32.3
Migut.A00429 Erythranthe guttata HOM05D005366 ORTHO05D006323 7.0e-83 312.8 884 30.4
C07p58760 Brassica napus HOM05D005366 ORTHO05D006323 2.0e-82 311.2 849 32.5
BolC7t46324H Brassica oleracea HOM05D005366 ORTHO05D006323 2.0e-82 311.2 849 32.5
THA.LOC104803624 Tarenaya hassleriana HOM05D005366 ORTHO05D006323 2.7e-82 310.8 860 30.5
Hma1.2p1_0272F.1_g109220 Hydrangea macrophylla HOM05D005366 ORTHO05D006323 7.8e-82 309.3 322 57.1
A03p60870 Brassica napus HOM05D005366 ORTHO05D006323 4.7e-79 300.1 857 31.4
BraA03t15125Z Brassica rapa HOM05D005366 ORTHO05D006323 4.7e-79 300.1 857 31.4
Haze_21760 Corylus avellana HOM05D005366 ORTHO05D006323 4.0e-78 297.0 551 38.5
Carub.0007s0900 Capsella rubella HOM05D005366 ORTHO05D006323 6.4e-76 289.7 852 33.1
Aa31LG2G18730 Aethionema arabicum HOM05D005366 ORTHO05D006323 1.4e-75 288.5 860 30.3
BcaC09g51938 Brassica carinata HOM05D005366 ORTHO05D006323 7.1e-75 286.2 846 31.2
ATR0580G390 Amborella trichopoda HOM05D005366 ORTHO05D006323 1.0e-73 282.3 844 30.0
Cpa.g.sc23.30 Carica papaya HOM05D005366 ORTHO05D006323 5.6e-72 276.6 642 32.6
AT4G31570 Arabidopsis thaliana HOM05D005366 ORTHO05D006323 9.5e-72 275.8 852 31.1
Haze_21759 Corylus avellana HOM05D005366 ORTHO05D006323 1.7e-68 265.0 317 51.1
SGA_v2.0_scaffold193G40671 Striga asiatica HOM05D005366 ORTHO05D006323 4.6e-66 256.9 784 30.9
arahy.Tifrunner.gnm1.ann1.MFD0CQ Arachis hypogaea HOM05D005366 ORTHO05D006323 1.3e-57 228.8 527 39.1
arahy.Tifrunner.gnm1.ann1.KT3XM2 Arachis hypogaea HOM05D005366 ORTHO05D006323 3.9e-57 227.3 528 39.4
HPP92_018359 Vanilla planifolia HOM05D005366 ORTHO05D006323 4.0e-46 190.7 881 25.8
Zm00001eb232290 Zea mays HOM05D005366 ORTHO05D006323 2.1e-42 178.3 831 25.8
CDE07G1832 Ceratophyllum demersum HOM05D005366 ORTHO05D006323 1.8e-38 165.2 411 31.9
Lsat_1_v5_gn_5_61021 Lactuca sativa HOM05D005366 ORTHO05D006323 6.9e-38 163.3 290 39.3
SEGI_23098 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 1.8e-25 122.1 837 22.9
Medtr8g059570 Medicago truncatula HOM05D005366 ORTHO05D006323 9.7e-24 116.3 123 54.5
SEGI_37710 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 8.5e-20 103.2 903 21.4
SEGI_07626 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 9.7e-16 89.7 308 25.6
Prupe.1G458700 Prunus persica HOM05D005366 ORTHO05D006323 2.6e-13 81.6 100 51.0
Hma1.2p1_0272F.1_g109200 Hydrangea macrophylla HOM05D005366 ORTHO05D006323 3.4e-13 81.3 47 78.7
Os02g0148300 Oryza sativa ssp. japonica HOM05D005366 ORTHO05D006323 3.4e-13 81.3 244 31.1
Sc11g0000790 Simmondsia chinensis HOM05D002970 ORTHO05D007037 1.6e-10 72.4 177 26.6
Nitab4.5_0000041g0280 Nicotiana tabacum HOM05D002970 ORTHO05D007037 2.1e-10 72.0 270 25.6
Manes.12G018200 Manihot esculenta HOM05D002970 ORTHO05D007037 1.4e-09 69.3 208 26.9
CDE07G0441 Ceratophyllum demersum HOM05D005366 ORTHO05D006323 5.1e-09 67.4 288 27.8
Dinv11020 Davidia involucrata HOM05D002970 ORTHO05D007037 4.4e-08 64.3 232 24.1
MELO3C011904.2 Cucumis melo HOM05D002970 ORTHO05D007037 7.4e-08 63.5 184 25.5
RcHm_v2.0_Chr7g0204011 Rosa chinensis HOM05D005366 ORTHO05D006323 7.4e-08 63.5 83 50.6
CsaV3_5G030650 Cucumis sativus L. HOM05D002970 ORTHO05D007037 1.7e-07 62.4 186 24.7
Lsat_1_v5_gn_8_150420 Lactuca sativa HOM05D002970 ORTHO05D007037 1.7e-07 62.4 356 21.9
TWI34G0790 Tripterygium wilfordii HOM05D005366 ORTHO05D006323 1.7e-07 62.4 94 43.6
Duzib268G0312 Durio zibethinus HOM05D002970 ORTHO05D007037 2.2e-07 62.0 226 26.5
Duzib268G0346 Durio zibethinus HOM05D002970 ORTHO05D007037 2.2e-07 62.0 226 26.5
Gohir.A03G130800 Gossypium hirsutum HOM05D002970 ORTHO05D007037 2.2e-07 62.0 209 25.8
Gohir.D01G153501 Gossypium hirsutum HOM05D002970 ORTHO05D007037 2.2e-07 62.0 264 23.1
MBI11_g22624_MAGBIO Magnolia biondii HOM05D002970 ORTHO05D007037 2.2e-07 62.0 239 23.0
QL03p055853 Quercus lobata HOM05D002970 ORTHO05D007037 3.7e-07 61.2 193 25.9
Sed0022070 Sechium edule HOM05D002970 ORTHO05D007037 1.8e-06 58.9 232 24.6


User provided reference genes

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