Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 7.6e-155 550.4 274 100.0
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 4.8e-48 195.7 239 48.1
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 9.0e-47 191.4 251 46.2
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.3e-42 176.8 268 44.8
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 1.4e-39 167.5 299 38.5
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 3.1e-39 166.4 283 41.3
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 6.9e-39 165.2 278 37.4
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 5.8e-38 162.2 234 41.9
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 2.9e-37 159.8 260 40.0
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 8.4e-37 158.3 278 39.6
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 8.4e-37 158.3 278 39.6
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.1e-36 157.9 284 37.3
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.9e-36 157.1 252 44.0
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 2.4e-36 156.8 301 36.9
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.6e-35 154.1 272 40.1
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 2.7e-35 153.3 259 40.5
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 3.5e-35 152.9 295 36.9
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 6.0e-35 152.1 249 42.2
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 7.9e-35 151.8 254 39.8
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.0e-34 151.4 256 41.4
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 3.9e-34 149.4 245 40.4
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 3.9e-34 149.4 281 37.7
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 8.7e-34 148.3 234 39.7
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 8.7e-34 148.3 277 37.5
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 3.3e-33 146.4 197 45.2
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 4.3e-33 146.0 229 39.3
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 4.3e-33 146.0 304 36.5
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 7.4e-33 145.2 247 40.1
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 1.3e-32 144.4 321 36.1
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 1.6e-32 144.1 306 35.9
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 1.6e-32 144.1 293 35.5
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 1.6e-32 144.1 276 37.0
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 8.2e-32 141.7 241 39.4
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.1e-31 141.4 240 39.2
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 1.1e-31 141.4 313 35.1
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 1.1e-31 141.4 278 37.1
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.4e-31 141.0 316 34.5
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.8e-31 140.6 272 35.3
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 4.0e-31 139.4 296 33.8
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 5.3e-31 139.0 168 47.0
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 6.9e-31 138.7 248 35.1
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 9.0e-31 138.3 222 42.8
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 1.2e-30 137.9 283 37.1
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 1.5e-30 137.5 259 37.5
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 2.6e-30 136.7 305 33.8
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 5.8e-30 135.6 276 35.9
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 5.8e-30 135.6 216 41.7
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 1.0e-29 134.8 237 40.5
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 1.3e-29 134.4 276 35.5
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.7e-29 134.0 314 31.2
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.2e-29 133.7 283 34.3
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 2.9e-29 133.3 255 36.9
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 2.9e-29 133.3 139 46.8
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 2.9e-29 133.3 273 36.3
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 3.8e-29 132.9 307 34.2
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 3.8e-29 132.9 249 35.7
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 1.4e-28 131.0 325 32.9
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 2.5e-28 130.2 139 46.0
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 3.2e-28 129.8 267 37.5
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 3.2e-28 129.8 135 48.9
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 4.2e-28 129.4 152 43.4
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 5.5e-28 129.0 140 47.1
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 1.6e-27 127.5 269 35.7
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 2.1e-27 127.1 262 37.0
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 3.5e-27 126.3 294 33.3
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 6.0e-27 125.6 248 36.7
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 7.9e-27 125.2 248 36.7
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 1.3e-26 124.4 248 36.3
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.3e-26 124.4 148 44.6
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.8e-26 124.0 265 33.6
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 3.0e-26 123.2 263 36.9
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 8.7e-26 121.7 170 39.4
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 1.1e-25 121.3 274 35.0
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.5e-25 120.9 157 42.7
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 1.5e-25 120.9 258 36.0
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.5e-25 120.2 147 41.5
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 4.3e-25 119.4 136 44.1
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 5.7e-25 119.0 248 35.1
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 5.7e-25 119.0 260 32.3
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.3e-24 117.9 138 46.4
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.2e-24 117.1 279 33.0
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 2.2e-24 117.1 291 31.6
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 3.7e-24 116.3 87 56.3
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 4.8e-24 115.9 255 35.7
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.4e-23 114.4 261 34.9
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.4e-23 114.4 268 32.1
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.8e-23 114.0 272 31.6
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.8e-23 114.0 137 48.2
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 3.1e-23 113.2 181 38.1
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 5.3e-23 112.5 328 32.0
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 6.9e-23 112.1 194 36.1
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 6.9e-23 112.1 147 40.8
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 6.9e-23 112.1 137 42.3
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 1.2e-22 111.3 268 32.5
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 1.2e-22 111.3 255 34.5
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 1.2e-22 111.3 160 36.9
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 1.2e-22 111.3 161 40.4
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 2.0e-22 110.5 194 35.6
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 2.6e-22 110.2 132 43.2
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 2.2e-21 107.1 147 40.1
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.1e-20 104.8 236 34.3
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.1e-20 104.8 141 43.3
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 1.4e-20 104.4 237 34.6
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 7.2e-20 102.1 270 31.1
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 9.3e-20 101.7 267 34.5
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 2.7e-19 100.1 87 54.0
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 3.6e-19 99.8 269 31.6
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.4e-18 97.8 85 52.9
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 6.7e-18 95.5 80 47.5
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.3e-16 91.3 244 30.7
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 9.1e-15 85.1 93 44.1
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.5e-14 84.3 85 40.0
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 3.4e-14 83.2 262 29.4
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.0e-13 81.6 94 42.6
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.2e-13 80.5 208 34.6
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 2.9e-13 80.1 116 36.2
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 8.5e-13 78.6 108 38.9
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 2.5e-12 77.0 92 40.2
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 5.5e-12 75.9 84 46.4
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 1.2e-11 74.7 127 44.9
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 7.9e-11 72.0 104 36.5
Actinidia09807 Actinidia chinensis HOM05D006067 ORTHO05D007327 3.0e-10 70.1 183 31.7
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 5.7e-09 65.9 74 47.3
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.7e-08 64.3 63 47.6
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 2.8e-08 63.5 62 46.8
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 2.4e-07 60.5 51 49.0
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 6.9e-07 58.9 228 25.9
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 9.1e-07 58.5 157 29.9


User provided reference genes

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