Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.4e-237 825.9 423 100.0
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.5e-223 777.7 423 93.9
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.8e-222 774.6 423 93.6
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.6e-189 664.5 423 82.3
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 8.3e-185 650.6 423 76.1
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 1.9e-181 639.4 423 77.1
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.2e-180 636.7 423 75.4
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.6e-178 629.0 426 74.4
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 6.0e-175 617.8 426 73.5
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.0e-174 617.1 426 73.7
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.5e-173 612.5 427 73.5
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 3.6e-172 608.6 445 70.1
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 8.1e-172 607.4 424 73.3
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.4e-171 605.9 424 73.3
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 4.0e-171 605.1 440 71.1
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.0e-170 602.8 423 72.6
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 3.2e-168 595.5 396 75.0
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 4.2e-168 595.1 423 71.9
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.6e-167 593.2 422 73.0
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.1e-167 592.8 443 69.5
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 3.5e-167 592.0 425 69.6
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.0e-166 590.5 427 69.6
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.3e-166 590.1 424 70.5
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 3.0e-166 589.0 425 72.0
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.5e-165 585.9 429 69.9
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.3e-165 585.5 414 72.2
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 7.3e-165 584.3 426 71.1
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 1.6e-164 583.2 413 71.2
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.1e-163 580.5 424 69.8
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 2.4e-163 579.3 424 70.8
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 2.4e-163 579.3 453 64.9
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 3.1e-163 578.9 424 69.1
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 4.0e-163 578.6 425 69.2
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.2e-162 577.0 425 68.7
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-162 577.0 425 68.7
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 2.6e-162 575.9 426 69.5
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.5e-162 575.1 425 68.5
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 4.5e-162 575.1 423 69.3
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 5.8e-162 574.7 432 69.4
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 5.8e-162 574.7 423 66.9
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 5.8e-162 574.7 426 70.2
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 7.6e-162 574.3 432 69.0
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 1.7e-161 573.2 423 67.1
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 2.2e-161 572.8 423 67.8
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.2e-161 572.8 425 69.6
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.9e-161 571.6 426 69.0
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.4e-160 570.1 425 68.2
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 4.2e-160 568.5 426 68.1
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.4e-160 568.2 425 67.5
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 9.3e-160 567.4 426 68.1
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 9.3e-160 567.4 398 72.1
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 4.6e-159 565.1 426 67.8
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 7.9e-159 564.3 420 67.6
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.8e-158 563.1 432 65.7
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 3.0e-158 562.4 436 66.5
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 8.7e-158 560.8 436 66.5
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.5e-157 560.1 437 67.3
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.9e-157 559.7 405 69.9
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.3e-156 557.0 423 67.6
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.6e-156 556.6 425 65.6
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.8e-156 555.8 425 65.4
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 2.8e-156 555.8 425 66.6
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 3.7e-156 555.4 424 67.7
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 4.8e-156 555.1 423 66.0
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 8.1e-156 554.3 416 68.0
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 1.8e-155 553.1 421 67.0
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.0e-155 552.0 421 67.0
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.5e-154 550.1 427 67.2
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 5.8e-154 548.1 424 65.6
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 5.8e-154 548.1 424 65.6
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.7e-153 546.6 419 66.1
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.8e-153 545.4 417 66.9
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.2e-151 540.4 417 64.0
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 1.2e-151 540.4 417 64.7
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.5e-151 538.9 424 64.9
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 4.6e-151 538.5 425 63.1
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 6.0e-151 538.1 413 66.1
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 7.9e-151 537.7 417 64.7
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.3e-150 537.0 455 60.7
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.8e-150 536.6 404 65.8
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.8e-150 536.6 404 65.8
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 3.0e-150 535.8 424 64.2
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 3.0e-150 535.8 424 64.2
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 6.7e-150 534.6 425 64.2
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 9.6e-149 530.8 432 62.7
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 2.8e-148 529.3 421 65.8
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.0e-145 520.8 415 63.4
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 4.2e-144 515.4 455 59.6
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.7e-143 512.7 421 65.6
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 6.7e-142 508.1 387 66.7
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 5.9e-138 495.0 462 58.0
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.7e-137 493.4 496 55.6
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 6.5e-137 491.5 424 61.1
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.4e-136 490.3 427 60.2
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.7e-132 476.9 414 61.4
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 6.3e-132 474.9 322 73.0
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 8.2e-132 474.6 426 60.1
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.2e-128 462.2 421 60.1
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 2.1e-127 459.9 401 60.1
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 7.0e-123 444.9 423 57.4
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 2.8e-116 422.9 338 61.2
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 4.4e-109 399.1 410 53.2
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.7e-108 397.1 283 71.4
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.1e-107 394.4 400 52.5
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 2.0e-101 373.6 267 71.2
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.7e-100 370.5 231 78.8
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 6.1e-87 325.5 201 78.1
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.8e-86 323.9 290 62.1
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 1.8e-86 323.9 202 77.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.1e-86 323.2 265 61.9
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.1e-86 323.2 265 61.9
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.2e-85 321.2 269 65.1
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.1e-80 304.7 168 91.1
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-78 297.4 153 96.1
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.7e-73 280.8 332 45.5
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 9.5e-72 275.0 284 51.8
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 2.3e-70 270.4 186 71.0
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.4e-67 261.2 275 49.8
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 4.1e-67 259.6 187 69.0
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 1.3e-65 254.6 178 71.3
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 3.8e-60 236.5 195 63.6
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 3.9e-57 226.5 155 72.3
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.6e-55 221.1 157 70.1
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 9.9e-53 211.8 183 58.5
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 7.1e-51 205.7 163 65.0
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 1.7e-49 201.1 158 63.3
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.5e-45 188.0 163 60.1
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.7e-44 184.5 147 67.3
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 9.6e-40 168.7 404 30.2
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.5e-26 123.6 97 60.8
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-23 114.8 97 55.7
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.6e-23 114.8 429 29.6
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.5e-20 102.8 71 63.4
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.1e-19 102.1 61 80.3
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.1e-18 97.8 55 85.5
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.0e-16 91.3 96 51.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 7.4e-16 89.4 99 47.5
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 1.9e-11 74.7 79 46.8
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 2.5e-11 74.3 152 35.5
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.3e-09 67.8 69 60.9
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.8e-07 60.8 46 54.3


User provided reference genes

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