Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028273 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D012826 1.9e-31 138.7 76 100.0
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 8.1e-14 80.1 65 78.5
TWI75G1677 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 1.1e-13 79.7 65 76.9
CANSAT25G0204 Cannabis sativa HOM05D001098 ORTHO05D002527 1.4e-13 79.3 65 75.4
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 2.4e-13 78.6 72 68.1
GSVIVG01023864001 Vitis vinifera HOM05D001098 ORTHO05D002527 2.4e-13 78.6 65 75.4
Atru.chr5.3569 Acer truncatum HOM05D001098 ORTHO05D002527 3.1e-13 78.2 65 76.9
Ciclev10028748m.g Citrus clementina HOM05D001098 ORTHO05D002527 3.1e-13 78.2 65 76.9
Duzib248G0955 Durio zibethinus HOM05D001098 ORTHO05D002527 3.1e-13 78.2 65 76.9
ClCG02G010830 Citrullus lanatus HOM05D001098 ORTHO05D002527 4.0e-13 77.8 65 75.4
CsaV3_6G010050 Cucumis sativus L. HOM05D001098 ORTHO05D002527 4.0e-13 77.8 65 75.4
Dinv41864 Davidia involucrata HOM05D001098 ORTHO05D002527 4.0e-13 77.8 65 73.8
Hma1.2p1_0032F.1_g018710 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 4.0e-13 77.8 65 76.9
Oeu012219.1 Olea europaea HOM05D001098 ORTHO05D002527 4.0e-13 77.8 65 75.4
Prupe.8G181000 Prunus persica HOM05D001098 ORTHO05D002527 4.0e-13 77.8 65 75.4
Sed0023457 Sechium edule HOM05D001098 ORTHO05D002527 4.0e-13 77.8 65 75.4
EL10Ac9g21546 Beta vulgaris HOM05D001098 ORTHO05D002527 5.2e-13 77.4 65 73.8
MELO3C013485.2 Cucumis melo HOM05D001098 ORTHO05D002527 5.2e-13 77.4 65 73.8
ECA233G3688 Erigeron canadensis HOM05D001098 ORTHO05D002527 5.2e-13 77.4 65 75.4
HanXRQChr16g0515181 Helianthus annuus HOM05D001098 ORTHO05D002527 5.2e-13 77.4 65 75.4
Rhsim05G0044700 Rhododendron simsii HOM05D001098 ORTHO05D002527 5.2e-13 77.4 65 73.8
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 5.2e-13 77.4 63 76.2
Actinidia17990 Actinidia chinensis HOM05D001098 ORTHO05D002527 6.8e-13 77.0 65 75.4
MSTRG.16957 Avicennia marina HOM05D001098 ORTHO05D002527 6.8e-13 77.0 64 75.0
Medtr5g099280 Medicago truncatula HOM05D001098 ORTHO05D002527 6.8e-13 77.0 65 73.8
Psat2g000520 Pisum sativum HOM05D001098 ORTHO05D002527 6.8e-13 77.0 65 73.8
Duzib132G1111 Durio zibethinus HOM05D001098 ORTHO05D002527 8.9e-13 76.6 65 75.4
Migut.B00005 Erythranthe guttata HOM05D001098 ORTHO05D002527 8.9e-13 76.6 65 75.4
Manes.18G113200 Manihot esculenta HOM05D001098 ORTHO05D002527 8.9e-13 76.6 64 75.0
TPR.G18630 Trifolium pratense HOM05D001098 ORTHO05D002527 8.9e-13 76.6 65 72.3
Cc09_g10880 Coffea canephora HOM05D001098 ORTHO05D002527 1.2e-12 76.3 64 70.3
Lsat_1_v5_gn_8_120701 Lactuca sativa HOM05D001098 ORTHO05D002527 1.2e-12 76.3 65 73.8
Phvul.008G292800 Phaseolus vulgaris HOM05D001098 ORTHO05D002527 1.2e-12 76.3 65 72.3
Actinidia20579 Actinidia chinensis HOM05D001098 ORTHO05D002527 1.5e-12 75.9 65 73.8
Ca_06505_v3 Cicer arietinum L. HOM05D001098 ORTHO05D002527 1.5e-12 75.9 65 72.3
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 1.5e-12 75.9 65 72.3
Glyma.14G000600 Glycine max HOM05D001098 ORTHO05D002527 1.5e-12 75.9 65 72.3
LjContig00081g0022408 Lotus japonicus HOM05D001098 ORTHO05D002527 1.5e-12 75.9 65 72.3
Nn6g31647 Nelumbo nucifera HOM05D001098 ORTHO05D002527 1.5e-12 75.9 65 73.8
PSO541G0403 Papaver somniferum HOM05D001098 ORTHO05D002527 1.5e-12 75.9 65 72.3
PSO675G9097 Papaver somniferum HOM05D001098 ORTHO05D002527 1.5e-12 75.9 65 72.3
Gohir.A04G111700 Gossypium hirsutum HOM05D001098 ORTHO05D002527 2.0e-12 75.5 65 75.4
PGR142G3259 Punica granatum HOM05D001098 ORTHO05D002527 2.0e-12 75.5 65 73.8
Sed0023927 Sechium edule HOM05D001098 ORTHO05D002527 2.0e-12 75.5 65 73.8
Zm00001eb412040 Zea mays HOM05D001098 ORTHO05D002527 2.0e-12 75.5 63 76.2
COL.COLO4_34319 Corchorus olitorius HOM05D001098 ORTHO05D002527 2.6e-12 75.1 65 75.4
FvH4_2g16930 Fragaria vesca HOM05D001098 ORTHO05D002527 2.6e-12 75.1 63 74.6
FAN15G1608 Fragaria x ananassa HOM05D001098 ORTHO05D002527 2.6e-12 75.1 63 74.6
FAN24G1038 Fragaria x ananassa HOM05D001098 ORTHO05D002527 2.6e-12 75.1 63 74.6
FAN27G2361 Fragaria x ananassa HOM05D001098 ORTHO05D002527 2.6e-12 75.1 63 74.6
MBI01_g17242_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 2.6e-12 75.1 62 75.8
MBI01_g32424_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 2.6e-12 75.1 62 75.8
RcHm_v2.0_Chr6g0281071 Rosa chinensis HOM05D001098 ORTHO05D002527 2.6e-12 75.1 63 74.6
Thecc.02G147100 Theobroma cacao HOM05D001098 ORTHO05D002527 2.6e-12 75.1 65 75.4
Ah.01g017660 Amaranthus hybridus HOM05D001098 ORTHO05D002527 3.4e-12 74.7 65 73.8
arahy.Tifrunner.gnm1.ann1.1X8DY6 Arachis hypogaea HOM05D001098 ORTHO05D002527 3.4e-12 74.7 65 70.8
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 3.4e-12 74.7 65 70.8
Lalb_Chr10g0107701 Lupinus albus HOM05D001098 ORTHO05D002527 3.4e-12 74.7 65 69.2
Os07g0573700 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D002527 3.4e-12 74.7 63 74.6
Potri.016G113200 Populus trichocarpa HOM05D001098 ORTHO05D002527 3.4e-12 74.7 65 72.3
Manes.02G204100 Manihot esculenta HOM05D001098 ORTHO05D002527 4.4e-12 74.3 65 73.8
Peaxi162Scf00296g01213 Petunia axillaris HOM05D001098 ORTHO05D002527 4.4e-12 74.3 65 72.3
CAN.G321.15 Capsicum annuum HOM05D001098 ORTHO05D002527 5.8e-12 73.9 65 70.8
Lj9A408T81 Lonicera japonica HOM05D001098 ORTHO05D002527 5.8e-12 73.9 65 73.8
MD05G1141000 Malus domestica HOM05D001098 ORTHO05D002527 5.8e-12 73.9 63 73.0
MD11G1242300 Malus domestica HOM05D001098 ORTHO05D002527 5.8e-12 73.9 63 73.0
Zm00001eb325140 Zea mays HOM05D001098 ORTHO05D002527 5.8e-12 73.9 64 70.3
Gohir.A13G064400 Gossypium hirsutum HOM05D001098 ORTHO05D002527 7.6e-12 73.6 65 72.3
Nitab4.5_0001003g0090 Nicotiana tabacum HOM05D001098 ORTHO05D002527 7.6e-12 73.6 65 70.8
Solyc11g008590.2 Solanum lycopersicum HOM05D001098 ORTHO05D002527 7.6e-12 73.6 65 70.8
Sopen11g004380 Solanum pennellii HOM05D001098 ORTHO05D002527 7.6e-12 73.6 65 70.8
PGSC0003DMG400016250 Solanum tuberosum HOM05D001098 ORTHO05D002527 7.6e-12 73.6 65 70.8
Aqoxy3G04159 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 9.9e-12 73.2 64 71.9
Gohir.D04G152000 Gossypium hirsutum HOM05D001098 ORTHO05D002527 9.9e-12 73.2 65 73.8
Eucgr.I01538 Eucalyptus grandis HOM05D001098 ORTHO05D002527 1.3e-11 72.8 65 73.8
Haze_10071 Corylus avellana HOM05D001098 ORTHO05D002527 1.7e-11 72.4 65 72.3
BcaB03g12410 Brassica carinata HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
BcaC01g00493 Brassica carinata HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
BcaNung02390 Brassica carinata HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
BcaNung06457 Brassica carinata HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
C07p61120 Brassica napus HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
BolC7t46536H Brassica oleracea HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
BraA03t15424Z Brassica rapa HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
Carub.0007s0496 Capsella rubella HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
CARHR243660 Cardamine hirsuta HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
Thhalv10025582m.g Eutrema salsugineum HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
Sp7g33130 Schrenkiella parvula HOM05D001098 ORTHO05D002527 2.2e-11 72.0 63 73.0
Gorai.012G138800 Gossypium raimondii HOM05D001098 ORTHO05D002527 2.9e-11 71.6 65 72.3
TAR381G1518 Trochodendron aralioides HOM05D001098 ORTHO05D002527 3.8e-11 71.2 65 72.3
HPP92_015755 Vanilla planifolia HOM05D001098 ORTHO05D002527 3.8e-11 71.2 65 70.8
AL7G15820 Arabidopsis lyrata HOM05D001098 ORTHO05D002527 4.9e-11 70.9 63 71.4
CiPaw.05G093900 Carya illinoinensis HOM05D001098 ORTHO05D002527 6.4e-11 70.5 63 71.4
CiPaw.06G114700 Carya illinoinensis HOM05D001098 ORTHO05D002527 6.4e-11 70.5 63 71.4
AUR62010182 Chenopodium quinoa HOM05D001098 ORTHO05D002527 6.4e-11 70.5 65 69.2
Oeu050440.1 Olea europaea HOM05D001098 ORTHO05D002527 1.1e-10 69.7 62 71.0
SEGI_32505 Sequoiadendron giganteum HOM05D001098 ORTHO05D002527 1.1e-10 69.7 65 66.2
AUR62013184 Chenopodium quinoa HOM05D001098 ORTHO05D002527 1.4e-10 69.3 65 69.2
A01p03220 Brassica napus HOM05D001098 ORTHO05D002527 5.4e-10 67.4 64 71.9
A08p21890 Brassica napus HOM05D001098 ORTHO05D002527 5.4e-10 67.4 64 71.9
C03p80640 Brassica napus HOM05D001098 ORTHO05D002527 5.4e-10 67.4 64 71.9
BolC3t20307H Brassica oleracea HOM05D001098 ORTHO05D002527 5.4e-10 67.4 64 71.9
BraA01t00307Z Brassica rapa HOM05D001098 ORTHO05D002527 5.4e-10 67.4 64 71.9
BraA08t34142Z Brassica rapa HOM05D001098 ORTHO05D002527 5.4e-10 67.4 64 71.9
C01p03570 Brassica napus HOM05D001098 ORTHO05D002527 9.2e-10 66.6 64 68.8
BolC1t00346H Brassica oleracea HOM05D001098 ORTHO05D012826 9.2e-10 66.6 64 68.8
SEGI_11233 Sequoiadendron giganteum HOM05D001098 ORTHO05D002527 1.2e-09 66.2 65 66.2
unitig_90.g27539 Utricularia gibba HOM05D001098 ORTHO05D002527 1.3e-08 62.8 65 58.5
C07p61130 Brassica napus HOM05D001098 ORTHO05D012826 2.3e-08 62.0 63 68.3
BolC7t46537H Brassica oleracea HOM05D001098 ORTHO05D012826 2.3e-08 62.0 63 68.3
Nitab4.5_0009631g0030 Nicotiana tabacum HOM05D001098 ORTHO05D002527 2.3e-08 62.0 49 77.6
SalBow1G7648 Salvia bowleyana HOM05D001098 ORTHO05D002527 2.3e-08 62.0 49 77.6
SalBow7G2674 Salvia bowleyana HOM05D001098 ORTHO05D002527 2.3e-08 62.0 49 77.6
arahy.Tifrunner.gnm1.ann1.5U49GI Arachis hypogaea HOM05D001098 ORTHO05D002527 3.0e-08 61.6 51 70.6
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 3.0e-08 61.6 51 70.6
Gohir.A01G095201 Gossypium hirsutum HOM05D001098 ORTHO05D012826 3.0e-08 61.6 43 81.4
VMungo0647G1862 Vigna mungo HOM05D001098 ORTHO05D002527 3.0e-08 61.6 50 74.0
QL06p014336 Quercus lobata HOM05D001098 ORTHO05D002527 5.1e-08 60.8 61 62.3
Gohir.A04G048165 Gossypium hirsutum HOM05D001098 ORTHO05D012826 8.7e-08 60.1 60 56.7
Gohir.A09G059050 Gossypium hirsutum HOM05D001098 ORTHO05D012826 8.7e-08 60.1 48 70.8
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 8.7e-08 60.1 53 69.8
Aqoxy2G01309 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 1.1e-07 59.7 63 61.9
Aqoxy6G01547 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 1.1e-07 59.7 63 61.9
A03p63540 Brassica napus HOM05D001098 ORTHO05D002527 1.1e-07 59.7 49 75.5
Rhsim11G0198300 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.5e-07 59.3 39 84.6
TAR628G0214 Trochodendron aralioides HOM05D000069 ORTHO05D000060 2.5e-07 58.5 51 70.6
Aa31sc18G70 Aethionema arabicum HOM05D001098 ORTHO05D002527 3.3e-07 58.2 57 64.9
Sc08g0002100 Simmondsia chinensis HOM05D001098 ORTHO05D002527 3.3e-07 58.2 50 68.0
Gohir.A12G104501 Gossypium hirsutum HOM05D001098 ORTHO05D012826 2.1e-06 55.5 37 83.8
SMO118G0063 Selaginella moellendorffii HOM05D001098 ORTHO05D002527 2.1e-06 55.5 58 60.3
C03p20580 Brassica napus HOM05D001098 ORTHO05D012826 6.2e-06 53.9 49 67.3
C03p64650 Brassica napus HOM05D001098 ORTHO05D012826 6.2e-06 53.9 49 67.3
BolC3t14466H Brassica oleracea HOM05D001098 ORTHO05D012826 6.2e-06 53.9 49 67.3
BolC3t18723H Brassica oleracea HOM05D001098 ORTHO05D012826 6.2e-06 53.9 49 67.3
DCAR_006386 Daucus carota HOM05D001098 ORTHO05D012826 8.1e-06 53.5 44 75.0


User provided reference genes

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