Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 5.1e-47 190.7 91 100.0
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 5.8e-43 177.2 91 87.9
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.9e-42 174.9 91 86.8
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 1.1e-41 172.9 91 85.7
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.3e-39 165.2 91 81.3
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 3.9e-39 164.5 91 83.5
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 5.1e-39 164.1 91 81.3
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 2.5e-38 161.8 91 81.3
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 7.4e-38 160.2 90 76.7
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 9.6e-38 159.8 90 75.6
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 9.6e-38 159.8 90 80.0
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 1.6e-37 159.1 91 79.1
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.8e-37 158.3 88 78.4
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 6.2e-37 157.1 91 74.7
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 6.2e-37 157.1 88 75.0
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 8.1e-37 156.8 91 74.7
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 8.1e-37 156.8 88 77.3
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 8.1e-37 156.8 91 71.4
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 8.1e-37 156.8 89 76.4
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 1.1e-36 156.4 91 74.7
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 1.8e-36 155.6 88 76.1
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.1e-36 154.8 93 75.3
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 3.1e-36 154.8 91 75.8
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 5.3e-36 154.1 91 73.6
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 6.9e-36 153.7 91 74.7
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.2e-35 152.9 91 78.0
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 1.2e-35 152.9 91 73.6
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 2.0e-35 152.1 90 77.8
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 2.0e-35 152.1 88 75.0
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 2.6e-35 151.8 91 74.7
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 3.4e-35 151.4 88 73.9
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 3.4e-35 151.4 91 74.7
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.4e-35 151.4 91 73.6
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 4.5e-35 151.0 87 77.0
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 4.5e-35 151.0 87 77.0
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 4.5e-35 151.0 88 75.0
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 5.8e-35 150.6 91 72.5
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.8e-35 150.6 91 73.6
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 7.6e-35 150.2 93 72.0
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 9.9e-35 149.8 91 73.6
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 9.9e-35 149.8 91 73.6
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 9.9e-35 149.8 91 73.6
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 1.3e-34 149.4 88 72.7
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.7e-34 149.1 92 79.3
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.7e-34 149.1 91 71.4
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.2e-34 148.7 91 71.4
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.2e-34 148.7 91 72.5
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 2.2e-34 148.7 91 71.4
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.9e-34 148.3 89 70.8
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 3.8e-34 147.9 91 73.6
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 3.8e-34 147.9 91 74.7
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 4.9e-34 147.5 89 71.9
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 6.4e-34 147.1 87 72.4
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.4e-34 147.1 91 70.3
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 8.4e-34 146.7 88 70.5
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 1.1e-33 146.4 88 73.9
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 1.1e-33 146.4 91 71.4
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 1.1e-33 146.4 91 73.6
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 1.9e-33 145.6 91 72.5
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 1.9e-33 145.6 91 72.5
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 1.9e-33 145.6 91 72.5
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 1.9e-33 145.6 91 72.5
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 1.9e-33 145.6 91 72.5
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.9e-33 145.6 91 74.7
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.9e-33 145.6 91 75.8
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 3.2e-33 144.8 91 73.6
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 5.5e-33 144.1 91 73.6
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 5.5e-33 144.1 87 72.4
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 7.1e-33 143.7 88 69.3
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 7.1e-33 143.7 91 70.3
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 9.3e-33 143.3 91 71.4
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.2e-32 142.9 92 73.9
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-32 142.9 91 73.6
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-32 142.9 91 73.6
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 1.2e-32 142.9 91 73.6
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 1.2e-32 142.9 91 73.6
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 1.2e-32 142.9 91 71.4
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.2e-32 142.9 90 70.0
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 1.6e-32 142.5 91 73.6
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.5e-32 141.4 91 71.4
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.5e-32 141.4 89 73.0
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 4.6e-32 141.0 91 71.4
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 6.0e-32 140.6 91 69.2
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 6.0e-32 140.6 91 69.2
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 7.9e-32 140.2 88 71.6
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 7.9e-32 140.2 88 71.6
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 7.9e-32 140.2 90 68.9
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 1.0e-31 139.8 89 71.9
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 1.3e-31 139.4 91 70.3
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 2.3e-31 138.7 91 72.5
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 2.3e-31 138.7 93 66.7
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 5.1e-31 137.5 91 68.1
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 1.1e-30 136.3 82 72.0
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 1.9e-30 135.6 87 67.8
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 4.3e-30 134.4 87 66.7
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 63.6
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 7.4e-30 133.7 87 65.5
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 9.6e-30 133.3 88 69.3
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 68.2
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 3.7e-29 131.3 87 65.5
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 6.2e-29 130.6 88 62.5
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 6.2e-29 130.6 87 59.8
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 1.4e-28 129.4 91 63.7
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 1.4e-28 129.4 91 63.7
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 5.3e-28 127.5 88 65.9
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 9.0e-28 126.7 88 65.9
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 1.2e-27 126.3 89 61.8
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 2.0e-27 125.6 87 63.2
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.4e-27 124.8 88 63.6
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.4e-27 124.8 88 63.6
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.4e-27 124.8 88 63.6
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.5e-27 124.4 82 65.9
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.8e-27 124.0 85 65.9
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 5.8e-27 124.0 88 63.6
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.7e-26 122.5 90 61.1
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 6.5e-26 120.6 65 83.1
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 1.1e-25 119.8 88 60.2
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.1e-25 119.8 88 60.2
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.5e-24 114.8 62 80.6
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 1.1e-22 109.8 91 59.3
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 2.4e-20 102.1 85 55.3
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 9.0e-20 100.1 75 60.0
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 3.8e-18 94.7 59 67.8
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 6.5e-18 94.0 88 50.0
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 7.2e-17 90.5 57 64.9
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 9.3e-17 90.1 90 51.1
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.2e-16 89.7 57 68.4
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 1.9e-14 82.4 58 63.8
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 3.3e-14 81.6 78 51.3
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 3.3e-14 81.6 56 66.1
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 7.4e-14 80.5 85 41.2
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 9.7e-14 80.1 57 63.2
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 1.8e-12 75.9 44 72.7
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.8e-12 75.9 45 73.3
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 1.3e-10 69.7 71 47.9
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 1.3e-10 69.7 71 47.9
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 6.5e-10 67.4 43 67.4
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 6.5e-10 67.4 43 67.4
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.9e-09 65.9 79 43.0
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.9e-09 65.9 79 43.0
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 1.2e-08 63.2 82 37.8
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 2.7e-08 62.0 80 37.5
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 1.0e-07 60.1 70 40.0


User provided reference genes

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