Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028261 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 4.2e-52 207.6 95 100.0
CSS0038528 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 3.6e-35 151.4 106 69.8
CSS0041787 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 9.4e-28 126.7 92 67.4
CiPaw.03G247500 Carya illinoinensis HOM05D003717 ORTHO05D004848 6.7e-26 120.6 92 63.0
Potri.018G127500 Populus trichocarpa HOM05D003717 ORTHO05D004848 1.5e-25 119.4 93 65.6
PGR142G2827 Punica granatum HOM05D003717 ORTHO05D004848 1.5e-25 119.4 92 63.0
QL02p089699 Quercus lobata HOM05D003717 ORTHO05D004848 1.5e-25 119.4 92 65.2
Sabra18G0108200 Salix brachista HOM05D003717 ORTHO05D004848 1.5e-25 119.4 93 65.6
Cc06_g08140 Coffea canephora HOM05D003717 ORTHO05D004848 7.5e-25 117.1 89 62.9
Haze_25523 Corylus avellana HOM05D003717 ORTHO05D004848 7.5e-25 117.1 89 64.0
Manes.14G115300 Manihot esculenta HOM05D003717 ORTHO05D004848 9.7e-25 116.7 95 62.1
CiPaw.04G174300 Carya illinoinensis HOM05D003717 ORTHO05D004848 1.3e-24 116.3 92 63.0
COL.COLO4_35140 Corchorus olitorius HOM05D003717 ORTHO05D004848 1.3e-24 116.3 91 61.5
Oeu055968.1 Olea europaea HOM05D003717 ORTHO05D004848 1.3e-24 116.3 89 62.9
Cfa003414 Carpinus fangiana HOM05D003717 ORTHO05D004848 1.7e-24 115.9 89 62.9
Ciclev10007683m.g Citrus clementina HOM05D003717 ORTHO05D004848 1.7e-24 115.9 92 63.0
TWI32G0090 Tripterygium wilfordii HOM05D003717 ORTHO05D004848 2.8e-24 115.2 92 59.8
Solyc12g009610.2 Solanum lycopersicum HOM05D003717 ORTHO05D004848 3.7e-24 114.8 89 61.8
Sopen12g004600 Solanum pennellii HOM05D003717 ORTHO05D004848 3.7e-24 114.8 89 61.8
Manes.06G048400 Manihot esculenta HOM05D003717 ORTHO05D004848 4.8e-24 114.4 98 61.2
CARHR265580 Cardamine hirsuta HOM05D003717 ORTHO05D004848 6.3e-24 114.0 92 62.0
Duzib168G1487 Durio zibethinus HOM05D003717 ORTHO05D004848 6.3e-24 114.0 92 60.9
Thecc.09G130900 Theobroma cacao HOM05D003717 ORTHO05D004848 6.3e-24 114.0 91 60.4
TAR636G2912 Trochodendron aralioides HOM05D003717 ORTHO05D004848 6.3e-24 114.0 92 60.9
arahy.Tifrunner.gnm1.ann1.QEV4QV Arachis hypogaea HOM05D003717 ORTHO05D004848 8.2e-24 113.6 86 62.8
Potri.006G066300 Populus trichocarpa HOM05D003717 ORTHO05D004848 8.2e-24 113.6 93 63.4
SGA_v2.0_scaffold229G43305 Striga asiatica HOM05D003717 ORTHO05D004848 8.2e-24 113.6 89 61.8
Ah.14g079420 Amaranthus hybridus HOM05D003717 ORTHO05D004848 1.1e-23 113.2 92 59.8
Eucgr.C01375 Eucalyptus grandis HOM05D003717 ORTHO05D004848 1.1e-23 113.2 92 59.8
THA.LOC104826549 Tarenaya hassleriana HOM05D003717 ORTHO05D004848 1.1e-23 113.2 92 59.8
GSVIVG01015579001 Vitis vinifera HOM05D003717 ORTHO05D004848 1.1e-23 113.2 92 62.0
Actinidia21963 Actinidia chinensis HOM05D003717 ORTHO05D004848 1.4e-23 112.8 92 60.9
CANSAT11G0921 Cannabis sativa HOM05D003717 ORTHO05D004848 1.4e-23 112.8 95 57.9
SalBow6G6762 Salvia bowleyana HOM05D003717 ORTHO05D004848 1.8e-23 112.5 86 62.8
Sabra06G0049200 Salix brachista HOM05D003717 ORTHO05D004848 2.4e-23 112.1 93 62.4
arahy.Tifrunner.gnm1.ann1.ZHFU2E Arachis hypogaea HOM05D003717 ORTHO05D004848 3.1e-23 111.7 86 61.6
Aqoxy7G03655 Aquilegia oxysepala HOM05D003717 ORTHO05D004848 4.1e-23 111.3 92 59.8
CAN.G778.1 Capsicum annuum HOM05D003717 ORTHO05D004848 4.1e-23 111.3 86 61.6
Dinv36487 Davidia involucrata HOM05D003717 ORTHO05D004848 4.1e-23 111.3 92 57.6
Gohir.D06G053000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 4.1e-23 111.3 91 60.4
Gorai.010G061900 Gossypium raimondii HOM05D003717 ORTHO05D004848 4.1e-23 111.3 91 60.4
EL10Ac8g18710 Beta vulgaris HOM05D003717 ORTHO05D004848 5.3e-23 110.9 92 59.8
BcaB08g35617 Brassica carinata HOM05D003717 ORTHO05D004848 5.3e-23 110.9 92 59.8
AUR62011169 Chenopodium quinoa HOM05D003717 ORTHO05D004848 5.3e-23 110.9 92 58.7
ECA240G3427 Erigeron canadensis HOM05D003717 ORTHO05D004848 5.3e-23 110.9 89 59.6
Sed0027813 Sechium edule HOM05D003717 ORTHO05D004848 5.3e-23 110.9 86 62.8
Actinidia26376 Actinidia chinensis HOM05D003717 ORTHO05D004848 7.0e-23 110.5 92 56.5
AUR62013315 Chenopodium quinoa HOM05D003717 ORTHO05D004848 7.0e-23 110.5 92 57.6
DCAR_009320 Daucus carota HOM05D003717 ORTHO05D004848 7.0e-23 110.5 92 58.7
MD02G1027400 Malus domestica HOM05D003717 ORTHO05D004848 7.0e-23 110.5 92 58.7
Prupe.7G247700 Prunus persica HOM05D003717 ORTHO05D004848 7.0e-23 110.5 89 58.4
MSTRG.6072 Avicennia marina HOM05D003717 ORTHO05D004848 9.1e-23 110.2 89 59.6
CAN.G551.81 Capsicum annuum HOM05D003717 ORTHO05D004848 9.1e-23 110.2 89 59.6
Nn2g12095 Nelumbo nucifera HOM05D003717 ORTHO05D004848 9.1e-23 110.2 89 59.6
TWI63G0928 Tripterygium wilfordii HOM05D003717 ORTHO05D004848 9.1e-23 110.2 92 56.5
Lalb_Chr12g0198081 Lupinus albus HOM05D003717 ORTHO05D004848 1.2e-22 109.8 100 57.0
Nitab4.5_0001349g0040 Nicotiana tabacum HOM05D003717 ORTHO05D004848 1.2e-22 109.8 86 61.6
PGSC0003DMG402030895 Solanum tuberosum HOM05D003717 ORTHO05D004848 1.6e-22 109.4 86 60.5
Atru.chr7.1107 Acer truncatum HOM05D003717 ORTHO05D004848 2.0e-22 109.0 91 59.3
Lsat_1_v5_gn_7_44181 Lactuca sativa HOM05D003717 ORTHO05D004848 2.0e-22 109.0 89 57.3
Lj7A427G45 Lonicera japonica HOM05D003717 ORTHO05D004848 2.0e-22 109.0 92 56.5
Cpa.g.sc46.33 Carica papaya HOM05D003717 ORTHO05D004848 2.7e-22 108.6 86 61.6
Duzib187G1288 Durio zibethinus HOM05D003717 ORTHO05D004848 2.7e-22 108.6 91 59.3
Thhalv10012867m.g Eutrema salsugineum HOM05D003717 ORTHO05D004848 2.7e-22 108.6 92 59.8
Gorai.004G276400 Gossypium raimondii HOM05D003717 ORTHO05D004848 2.7e-22 108.6 92 58.7
HanXRQChr09g0243961 Helianthus annuus HOM05D003717 ORTHO05D004848 2.7e-22 108.6 90 57.8
Sc14g0000170 Simmondsia chinensis HOM05D003717 ORTHO05D004848 3.5e-22 108.2 92 58.7
AL8G27060 Arabidopsis lyrata HOM05D003717 ORTHO05D004848 4.5e-22 107.8 92 57.6
FvH4_1g02680 Fragaria vesca HOM05D003717 ORTHO05D004848 4.5e-22 107.8 92 55.4
FAN19G0930 Fragaria x ananassa HOM05D003717 ORTHO05D004848 4.5e-22 107.8 92 55.4
FAN23G0973 Fragaria x ananassa HOM05D003717 ORTHO05D004848 4.5e-22 107.8 92 55.4
FAN26G2736 Fragaria x ananassa HOM05D003717 ORTHO05D004848 4.5e-22 107.8 92 55.4
FAN28G2297 Fragaria x ananassa HOM05D003717 ORTHO05D004848 4.5e-22 107.8 92 55.4
Nitab4.5_0006319g0050 Nicotiana tabacum HOM05D003717 ORTHO05D004848 4.5e-22 107.8 86 61.6
RcHm_v2.0_Chr2g0087771 Rosa chinensis HOM05D003717 ORTHO05D004848 4.5e-22 107.8 92 55.4
Sopen07g003880 Solanum pennellii HOM05D003717 ORTHO05D004848 4.5e-22 107.8 86 59.3
Migut.J01218 Erythranthe guttata HOM05D003717 ORTHO05D004848 5.9e-22 107.5 86 60.5
Gohir.A08G238200 Gossypium hirsutum HOM05D003717 ORTHO05D004848 5.9e-22 107.5 92 58.7
Gohir.D05G016000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 5.9e-22 107.5 92 54.3
Gorai.009G016100 Gossypium raimondii HOM05D003717 ORTHO05D004848 5.9e-22 107.5 92 54.3
MBI15_g08165_MAGBIO Magnolia biondii HOM05D003717 ORTHO05D004848 5.9e-22 107.5 92 56.5
Rhsim01G0064300 Rhododendron simsii HOM05D003717 ORTHO05D004848 5.9e-22 107.5 91 57.1
Sp6g14780 Schrenkiella parvula HOM05D003717 ORTHO05D004848 5.9e-22 107.5 92 58.7
unitig_60.g25513 Utricularia gibba HOM05D003717 ORTHO05D004848 5.9e-22 107.5 86 60.5
HPP92_010889 Vanilla planifolia HOM05D003717 ORTHO05D004848 5.9e-22 107.5 90 54.4
GSVIVG01015576001 Vitis vinifera HOM05D003717 ORTHO05D004848 5.9e-22 107.5 92 57.6
Gohir.D08G258900 Gossypium hirsutum HOM05D003717 ORTHO05D004848 7.7e-22 107.1 92 57.6
Phvul.003G167800 Phaseolus vulgaris HOM05D003717 ORTHO05D004848 7.7e-22 107.1 86 61.6
TAR625G0037 Trochodendron aralioides HOM05D003717 ORTHO05D004848 1.0e-21 106.7 92 57.6
Carub.0008s1272 Capsella rubella HOM05D003717 ORTHO05D004848 1.3e-21 106.3 92 58.7
Lj4g0002653 Lotus japonicus HOM05D003717 ORTHO05D004848 1.3e-21 106.3 104 53.8
ClCG11G003270 Citrullus lanatus HOM05D003717 ORTHO05D004848 1.7e-21 105.9 86 59.3
MELO3C004462.2 Cucumis melo HOM05D003717 ORTHO05D004848 1.7e-21 105.9 86 59.3
CsaV3_2G003070 Cucumis sativus L. HOM05D003717 ORTHO05D004848 1.7e-21 105.9 86 59.3
FvH4_7g25820 Fragaria vesca HOM05D003717 ORTHO05D004848 1.7e-21 105.9 92 54.3
Peaxi162Scf00088g01619 Petunia axillaris HOM05D003717 ORTHO05D004848 1.7e-21 105.9 89 56.2
Hund26546 Selenicereus undatus HOM05D003717 ORTHO05D004848 1.7e-21 105.9 92 55.4
PSO210G0578 Papaver somniferum HOM05D003717 ORTHO05D004848 2.2e-21 105.5 95 55.8
PSO210G7704 Papaver somniferum HOM05D003717 ORTHO05D004848 2.2e-21 105.5 95 55.8
Ca_06936_v3 Cicer arietinum L. HOM05D003717 ORTHO05D004848 3.8e-21 104.8 104 51.9
Ca_30465_v3 Cicer arietinum L. HOM05D003717 ORTHO05D004848 3.8e-21 104.8 104 51.9
Glyma.17G112200 Glycine max HOM05D003717 ORTHO05D004848 3.8e-21 104.8 89 58.4
Gohir.A05G014800 Gossypium hirsutum HOM05D003717 ORTHO05D004848 3.8e-21 104.8 92 52.2
vmacro07715 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 3.8e-21 104.8 92 55.4
BNapus_Darmor_BZH_scaffold_232p00030 Brassica napus HOM05D003717 ORTHO05D004848 6.5e-21 104.0 92 56.5
BolC2t08086H Brassica oleracea HOM05D003717 ORTHO05D004848 6.5e-21 104.0 92 56.5
BraA02t06235Z Brassica rapa HOM05D003717 ORTHO05D004848 6.5e-21 104.0 92 56.5
VMungo1215G1390 Vigna mungo HOM05D003717 ORTHO05D004848 6.5e-21 104.0 86 60.5
Aqoxy7G02295 Aquilegia oxysepala HOM05D003717 ORTHO05D004848 8.5e-21 103.6 85 60.0
Glyma.13G159100 Glycine max HOM05D003717 ORTHO05D004848 8.5e-21 103.6 89 57.3
TPR.G26469 Trifolium pratense HOM05D003717 ORTHO05D004848 8.5e-21 103.6 104 52.9
BcaC03g14516 Brassica carinata HOM05D003717 ORTHO05D004848 1.1e-20 103.2 92 56.5
Psat4g040040 Pisum sativum HOM05D003717 ORTHO05D004848 1.1e-20 103.2 104 52.9
AT5G52580 Arabidopsis thaliana HOM05D003717 ORTHO05D004848 1.5e-20 102.8 92 56.5
FAN06G0971 Fragaria x ananassa HOM05D003717 ORTHO05D004848 3.2e-20 101.7 92 53.3
Gohir.A06G054000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 3.2e-20 101.7 91 56.0
Nitab4.5_0012287g0010 Nicotiana tabacum HOM05D003717 ORTHO05D004848 3.2e-20 101.7 86 57.0
Pp3c20_14740 Physcomitrium patens HOM05D003717 ORTHO05D004848 4.2e-20 101.3 89 56.2
SEGI_13709 Sequoiadendron giganteum HOM05D003717 ORTHO05D004848 4.2e-20 101.3 86 55.8
vmacro06150 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 4.2e-20 101.3 92 54.3
A02p11700 Brassica napus HOM05D003717 ORTHO05D004848 5.5e-20 100.9 92 54.3
FAN10G3828 Fragaria x ananassa HOM05D003717 ORTHO05D004848 5.5e-20 100.9 92 55.4
Hund09277 Selenicereus undatus HOM05D003717 ORTHO05D004848 7.2e-20 100.5 89 55.1
HanXRQChr03g0063211 Helianthus annuus HOM05D003717 ORTHO05D004848 9.4e-20 100.1 89 55.1
Lsat_1_v5_gn_8_62521 Lactuca sativa HOM05D003717 ORTHO05D004848 9.4e-20 100.1 89 51.7
Lalb_Chr07g0179131 Lupinus albus HOM05D003717 ORTHO05D004848 9.4e-20 100.1 90 54.4
MD15G1168800 Malus domestica HOM05D003717 ORTHO05D004848 9.4e-20 100.1 92 54.3
ATR0724G026 Amborella trichopoda HOM05D003717 ORTHO05D004848 1.2e-19 99.8 93 53.8
HanXRQChr03g0060941 Helianthus annuus HOM05D003717 ORTHO05D004848 1.2e-19 99.8 89 55.1
Medtr4g115090 Medicago truncatula HOM05D003717 ORTHO05D004848 4.7e-19 97.8 104 51.0
Sed0019028 Sechium edule HOM05D003717 ORTHO05D004848 8.0e-19 97.1 89 55.1
Lsat_1_v5_gn_5_91980 Lactuca sativa HOM05D003717 ORTHO05D004848 3.4e-17 91.7 83 54.2
SHI28847 Sapria himalayana HOM05D003717 ORTHO05D004848 7.5e-17 90.5 82 56.1
Os02g0709800 Oryza sativa ssp. japonica HOM05D003717 ORTHO05D004848 9.8e-17 90.1 86 51.2
Mapoly0045s0037 Marchantia polymorpha HOM05D003717 ORTHO05D004848 1.3e-16 89.7 82 53.7
AagrBONN_evm.TU.Sc2ySwM_369.444 Anthoceros agrestis HOM05D003717 ORTHO05D004848 6.3e-16 87.4 84 52.4
CDE06G1365 Ceratophyllum demersum HOM05D003717 ORTHO05D004848 8.3e-16 87.0 83 51.8
RcHm_v2.0_Chr7g0194011 Rosa chinensis HOM05D003717 ORTHO05D004848 5.4e-15 84.3 81 50.6
CSS0040306 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 1.0e-13 80.1 46 78.3
SMO137G0381 Selaginella moellendorffii HOM05D003717 ORTHO05D004848 2.9e-13 78.6 82 48.8
CBR_g5611 Chara braunii HOM05D003717 ORTHO05D004848 2.1e-11 72.4 79 45.6
Peaxi162Scf00313g00819 Petunia axillaris HOM05D003717 ORTHO05D004848 3.6e-11 71.6 53 64.2
COL.COLO4_13247 Corchorus olitorius HOM05D003717 ORTHO05D004848 1.0e-10 70.1 52 63.5
QL12p005271 Quercus lobata HOM05D003717 ORTHO05D004848 1.8e-10 69.3 44 70.5
DCAR_014898 Daucus carota HOM05D003717 ORTHO05D004848 8.3e-08 60.5 50 60.0


User provided reference genes

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