Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028259 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004029 2.3e-37 158.3 74 100.0
CSS0039121 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004029 4.9e-16 87.4 73 67.1
CSS0047816 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004029 4.9e-16 87.4 73 67.1
Lsat_1_v5_gn_7_61700 Lactuca sativa HOM05D000276 ORTHO05D004029 1.4e-15 85.9 73 64.4
Nitab4.5_0000062g0340 Nicotiana tabacum HOM05D000276 ORTHO05D004029 1.4e-15 85.9 73 64.4
Peaxi162Scf00153g01326 Petunia axillaris HOM05D000276 ORTHO05D004029 1.4e-15 85.9 73 64.4
COL.COLO4_24921 Corchorus olitorius HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 64.4
COL.COLO4_24931 Corchorus olitorius HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 64.4
Duzib168G1707 Durio zibethinus HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 64.4
Gohir.A09G107300 Gossypium hirsutum HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 64.4
Gohir.A09G108000 Gossypium hirsutum HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 64.4
Gohir.D09G104000 Gossypium hirsutum HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 64.4
Gohir.D09G105600 Gossypium hirsutum HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 64.4
Gorai.006G121400 Gossypium raimondii HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 64.4
Gorai.006G122000 Gossypium raimondii HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 64.4
HanXRQChr13g0406721 Helianthus annuus HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 63.0
Manes.02G133300 Manihot esculenta HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 65.8
Nitab4.5_0005702g0020 Nicotiana tabacum HOM05D000276 ORTHO05D004029 1.9e-15 85.5 73 64.4
PGR102G0044 Punica granatum HOM05D000276 ORTHO05D004029 2.4e-15 85.1 73 64.4
ECA248G2311 Erigeron canadensis HOM05D000276 ORTHO05D004029 3.2e-15 84.7 73 63.0
Gohir.D05G075000 Gossypium hirsutum HOM05D000276 ORTHO05D004029 3.2e-15 84.7 73 63.0
Gorai.009G076300 Gossypium raimondii HOM05D000276 ORTHO05D004029 3.2e-15 84.7 73 63.0
Lj6g0003031 Lotus japonicus HOM05D000276 ORTHO05D004029 3.2e-15 84.7 73 63.0
Manes.01G174700 Manihot esculenta HOM05D000276 ORTHO05D004029 3.2e-15 84.7 73 64.4
Manes.07G090500 Manihot esculenta HOM05D000276 ORTHO05D004029 3.2e-15 84.7 73 64.4
Nitab4.5_0006448g0050 Nicotiana tabacum HOM05D000276 ORTHO05D004029 3.2e-15 84.7 73 63.0
HanXRQChr01g0009541 Helianthus annuus HOM05D000276 ORTHO05D004029 4.2e-15 84.3 73 61.6
QL07p015235 Quercus lobata HOM05D000276 ORTHO05D004029 4.2e-15 84.3 73 61.6
vmacro14293 Vaccinium macrocarpon HOM05D000276 ORTHO05D004029 4.2e-15 84.3 73 64.4
Actinidia24481 Actinidia chinensis HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
arahy.Tifrunner.gnm1.ann1.41WA94 Arachis hypogaea HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
arahy.Tifrunner.gnm1.ann1.B6WW7F Arachis hypogaea HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
arahy.Tifrunner.gnm1.ann1.U0LA3H Arachis hypogaea HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
arahy.Tifrunner.gnm1.ann1.YG1L25 Arachis hypogaea HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
DCAR_020627 Daucus carota HOM05D000276 ORTHO05D004029 5.4e-15 84.0 75 61.3
Oeu023021.1 Olea europaea HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
Oeu044224.1 Olea europaea HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
Potri.009G020800 Populus trichocarpa HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
Solyc10g081130.2 Solanum lycopersicum HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
Sopen10g031630 Solanum pennellii HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
PGSC0003DMG400028108 Solanum tuberosum HOM05D000276 ORTHO05D004029 5.4e-15 84.0 73 63.0
CAN.G128.104 Capsicum annuum HOM05D000276 ORTHO05D004029 7.1e-15 83.6 73 64.4
Duzib170G0395 Durio zibethinus HOM05D000276 ORTHO05D004029 7.1e-15 83.6 73 61.6
Gohir.A05G072200 Gossypium hirsutum HOM05D000276 ORTHO05D004029 7.1e-15 83.6 73 61.6
Lj2C947T2 Lonicera japonica HOM05D000276 ORTHO05D004029 7.1e-15 83.6 73 64.4
Sabra16G0133000 Salix brachista HOM05D000276 ORTHO05D004029 7.1e-15 83.6 73 61.6
SEGI_12090 Sequoiadendron giganteum HOM05D000276 ORTHO05D004029 7.1e-15 83.6 73 64.4
SEGI_26597 Sequoiadendron giganteum HOM05D000276 ORTHO05D004029 7.1e-15 83.6 73 64.4
SEGI_30696 Sequoiadendron giganteum HOM05D000276 ORTHO05D004029 7.1e-15 83.6 73 64.4
Thecc.09G256100 Theobroma cacao HOM05D000276 ORTHO05D004029 7.1e-15 83.6 73 63.0
Aqoxy2G00037 Aquilegia oxysepala HOM05D000276 ORTHO05D004029 9.3e-15 83.2 72 62.5
Ciclev10012559m.g Citrus clementina HOM05D000276 ORTHO05D004029 9.3e-15 83.2 73 63.0
Migut.K00178 Erythranthe guttata HOM05D000276 ORTHO05D004029 9.3e-15 83.2 73 63.0
Potri.001G224100 Populus trichocarpa HOM05D000276 ORTHO05D004029 9.3e-15 83.2 73 60.3
Sabra09G0011500 Salix brachista HOM05D000276 ORTHO05D004029 9.3e-15 83.2 71 64.8
unitig_0.g593 Utricularia gibba HOM05D000276 ORTHO05D004029 9.3e-15 83.2 73 63.0
Actinidia07001 Actinidia chinensis HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 63.0
EL10Ac9g20659 Beta vulgaris HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 63.0
CAN.G959.39 Capsicum annuum HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
CiPaw.09G162800 Carya illinoinensis HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
Haze_20338 Corylus avellana HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
Glyma.05G079000 Glycine max HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
Hma1.2p1_0252F.1_g102770 Hydrangea macrophylla HOM05D000276 ORTHO05D004029 1.2e-14 82.8 74 60.8
Lalb_Chr02g0157671 Lupinus albus HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
Lalb_Chr21g0317431 Lupinus albus HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
Nitab4.5_0000123g0180 Nicotiana tabacum HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
Peaxi162Scf00003g05357 Petunia axillaris HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
Phvul.004G073800 Phaseolus vulgaris HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
Solyc10g077030.2 Solanum lycopersicum HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
Sopen10g028710 Solanum pennellii HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
TAR623G1636 Trochodendron aralioides HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
VMungo0464G2001 Vigna mungo HOM05D000276 ORTHO05D004029 1.2e-14 82.8 73 61.6
CSS0021345 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004029 1.6e-14 82.4 73 63.0
CSS0026796 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004029 1.6e-14 82.4 73 63.0
AUR62018109 Chenopodium quinoa HOM05D000276 ORTHO05D004029 1.6e-14 82.4 73 61.6
AUR62034441 Chenopodium quinoa HOM05D000276 ORTHO05D004029 1.6e-14 82.4 73 61.6
Dinv12304 Davidia involucrata HOM05D000276 ORTHO05D004029 1.6e-14 82.4 73 64.4
PGSC0003DMG400007189 Solanum tuberosum HOM05D000276 ORTHO05D004029 1.6e-14 82.4 73 61.6
Atru.chr1.1717 Acer truncatum HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
Atru.chr1.1733 Acer truncatum HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
Ca_04444_v3 Cicer arietinum L. HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
ClCG04G004960 Citrullus lanatus HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
MELO3C026800.2 Cucumis melo HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
CsaV3_4G031710 Cucumis sativus L. HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
Migut.J01569 Erythranthe guttata HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 61.6
Lalb_Chr06g0174281 Lupinus albus HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
Medtr6g024135 Medicago truncatula HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
Psat1g087640 Pisum sativum HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
Sed0010615 Sechium edule HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
THA.LOC104816960 Tarenaya hassleriana HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 64.4
TPR.G15206 Trifolium pratense HOM05D000276 ORTHO05D004029 2.7e-14 81.6 73 60.3
MSTRG.19763 Avicennia marina HOM05D000276 ORTHO05D004029 3.5e-14 81.3 73 61.6
CANSAT78G1055 Cannabis sativa HOM05D000276 ORTHO05D004029 3.5e-14 81.3 73 63.0
Cpa.g.sc34.215 Carica papaya HOM05D000276 ORTHO05D004029 3.5e-14 81.3 73 63.0
CiPaw.10G122500 Carya illinoinensis HOM05D000276 ORTHO05D004029 3.5e-14 81.3 73 60.3
MBI13_g30271_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D004029 3.5e-14 81.3 73 60.3
MD14G1092100 Malus domestica HOM05D000276 ORTHO05D004029 3.5e-14 81.3 73 61.6
Prupe.7G022800 Prunus persica HOM05D000276 ORTHO05D004029 3.5e-14 81.3 73 61.6
Sp1g07140 Schrenkiella parvula HOM05D000276 ORTHO05D004029 3.5e-14 81.3 73 63.0
SGA_v2.0_scaffold66G22319 Striga asiatica HOM05D000276 ORTHO05D004029 3.5e-14 81.3 73 60.3
TAR369G0836 Trochodendron aralioides HOM05D000276 ORTHO05D004029 3.5e-14 81.3 73 60.3
Ah.12g063010 Amaranthus hybridus HOM05D000276 ORTHO05D004029 4.6e-14 80.9 73 61.6
Ah.15g092160 Amaranthus hybridus HOM05D000276 ORTHO05D004029 4.6e-14 80.9 73 61.6
ATR1096G130 Amborella trichopoda HOM05D000276 ORTHO05D004029 4.6e-14 80.9 73 60.3
MSTRG.6284 Avicennia marina HOM05D000276 ORTHO05D004029 4.6e-14 80.9 73 61.6
Os01g0811100 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D004029 4.6e-14 80.9 71 62.0
TWI74G1482 Tripterygium wilfordii HOM05D000276 ORTHO05D004029 4.6e-14 80.9 71 62.0
HPP92_025893 Vanilla planifolia HOM05D000276 ORTHO05D004029 4.6e-14 80.9 71 62.0
GSVIVG01025839001 Vitis vinifera HOM05D000276 ORTHO05D004029 4.6e-14 80.9 73 61.6
Zm00001eb150180 Zea mays HOM05D000276 ORTHO05D004029 4.6e-14 80.9 71 62.0
Zm00001eb329090 Zea mays HOM05D000276 ORTHO05D004029 4.6e-14 80.9 71 62.0
Duzib150G0677 Durio zibethinus HOM05D000276 ORTHO05D004029 6.0e-14 80.5 73 60.3
Duzib150G1512 Durio zibethinus HOM05D000276 ORTHO05D004029 6.0e-14 80.5 73 60.3
TWI77G0118 Tripterygium wilfordii HOM05D000276 ORTHO05D004029 6.0e-14 80.5 71 60.6
Zm00001eb110340 Zea mays HOM05D000276 ORTHO05D004029 6.0e-14 80.5 71 62.0
Aa31LG5G8400 Aethionema arabicum HOM05D000276 ORTHO05D004029 7.9e-14 80.1 73 61.6
AL4G20540 Arabidopsis lyrata HOM05D000276 ORTHO05D004029 7.9e-14 80.1 73 61.6
AT2G27020 Arabidopsis thaliana HOM05D000276 ORTHO05D004029 7.9e-14 80.1 73 61.6
BraA04t17627Z Brassica rapa HOM05D000276 ORTHO05D004029 7.9e-14 80.1 73 61.6
Carub.0004s0750 Capsella rubella HOM05D000276 ORTHO05D004029 7.9e-14 80.1 73 61.6
CARHR119280 Cardamine hirsuta HOM05D000276 ORTHO05D004029 7.9e-14 80.1 73 61.6
PSO367G0001 Papaver somniferum HOM05D000276 ORTHO05D004029 7.9e-14 80.1 72 61.1
PSO384G1909 Papaver somniferum HOM05D000276 ORTHO05D004029 7.9e-14 80.1 72 61.1
PSO384G2943 Papaver somniferum HOM05D000276 ORTHO05D004029 7.9e-14 80.1 72 61.1
Sed0020710 Sechium edule HOM05D000276 ORTHO05D004029 7.9e-14 80.1 73 58.9
Glyma.19G072100 Glycine max HOM05D000276 ORTHO05D004029 1.0e-13 79.7 73 60.3
SalBow6G2597 Salvia bowleyana HOM05D000276 ORTHO05D004029 1.0e-13 79.7 73 60.3
SalBow6G3127 Salvia bowleyana HOM05D000276 ORTHO05D004029 1.0e-13 79.7 73 60.3
Hund01264 Selenicereus undatus HOM05D000276 ORTHO05D004029 1.0e-13 79.7 71 62.0
Thecc.09G254900 Theobroma cacao HOM05D000276 ORTHO05D004029 1.0e-13 79.7 73 61.6
Hma1.2p1_0694F.1_g204370 Hydrangea macrophylla HOM05D000276 ORTHO05D004029 1.3e-13 79.3 73 60.3
Hma1.2p1_2784F.1_g328425 Hydrangea macrophylla HOM05D000276 ORTHO05D004029 1.3e-13 79.3 73 60.3
Os05g0490800 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D004029 1.3e-13 79.3 71 60.6
Zm00001eb369210 Zea mays HOM05D000276 ORTHO05D004029 1.3e-13 79.3 71 60.6
BcaB02g10063 Brassica carinata HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
BcaC02g10851 Brassica carinata HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
A04p20510 Brassica napus HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
A07p17940 Brassica napus HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
C04p24500 Brassica napus HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
C04p56280 Brassica napus HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
BolC4t23949H Brassica oleracea HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
BolC4t27155H Brassica oleracea HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
BraA07t29512Z Brassica rapa HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
Thhalv10002085m.g Eutrema salsugineum HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
Sp4g08280 Schrenkiella parvula HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
THA.LOC104800482 Tarenaya hassleriana HOM05D000276 ORTHO05D004029 1.8e-13 79.0 73 60.3
FAN04G0427 Fragaria x ananassa HOM05D000276 ORTHO05D004029 2.3e-13 78.6 73 57.5
FAN08G1120 Fragaria x ananassa HOM05D000276 ORTHO05D004029 2.3e-13 78.6 73 57.5
FAN13G1652 Fragaria x ananassa HOM05D000276 ORTHO05D004029 2.3e-13 78.6 73 57.5
FAN13G1707 Fragaria x ananassa HOM05D000276 ORTHO05D004029 2.3e-13 78.6 73 57.5
Nn7g37164 Nelumbo nucifera HOM05D000276 ORTHO05D004029 2.3e-13 78.6 73 60.3
RcHm_v2.0_Chr7g0212971 Rosa chinensis HOM05D000276 ORTHO05D004029 2.3e-13 78.6 73 57.5
DCAR_013514 Daucus carota HOM05D000276 ORTHO05D004029 3.0e-13 78.2 73 60.3
SalBow1G1754 Salvia bowleyana HOM05D000276 ORTHO05D004029 3.0e-13 78.2 71 62.0
SalBow1G5968 Salvia bowleyana HOM05D000276 ORTHO05D004029 3.0e-13 78.2 71 62.0
Sc06g0010570 Simmondsia chinensis HOM05D000276 ORTHO05D004029 3.0e-13 78.2 73 61.6
SGA_v2.0_scaffold69G23197 Striga asiatica HOM05D000276 ORTHO05D004029 3.0e-13 78.2 73 58.9
Sc15g0007350 Simmondsia chinensis HOM05D000276 ORTHO05D004029 3.9e-13 77.8 73 61.6
FvH4_5g23670 Fragaria vesca HOM05D000276 ORTHO05D004029 5.1e-13 77.4 73 56.2
FAN18G0197 Fragaria x ananassa HOM05D000276 ORTHO05D004029 5.1e-13 77.4 73 56.2
FAN18G4432 Fragaria x ananassa HOM05D000276 ORTHO05D004029 5.1e-13 77.4 73 56.2
Cc06_g22720 Coffea canephora HOM05D000276 ORTHO05D004029 6.7e-13 77.0 73 57.5
CDE09G1132 Ceratophyllum demersum HOM05D000276 ORTHO05D004029 8.7e-13 76.6 71 59.2
THA.LOC104826468 Tarenaya hassleriana HOM05D000276 ORTHO05D004029 8.7e-13 76.6 73 60.3
Eucgr.B03771 Eucalyptus grandis HOM05D000276 ORTHO05D004029 1.9e-12 75.5 71 60.6
Hund01261 Selenicereus undatus HOM05D000276 ORTHO05D004029 2.5e-12 75.1 71 60.6
SMO137G0069 Selaginella moellendorffii HOM05D000276 ORTHO05D004029 3.3e-12 74.7 73 58.9
Pp3c5_1590 Physcomitrium patens HOM05D000276 ORTHO05D004029 7.4e-12 73.6 73 56.2
AagrBONN_evm.TU.Sc2ySwM_228.1950 Anthoceros agrestis HOM05D000276 ORTHO05D004029 9.6e-12 73.2 71 59.2
Pp3c27_6330 Physcomitrium patens HOM05D000276 ORTHO05D004029 2.1e-11 72.0 73 54.8
Mapoly0202s0003 Marchantia polymorpha HOM05D000276 ORTHO05D004029 1.4e-10 69.3 71 54.9
Mapoly0202s0007 Marchantia polymorpha HOM05D000276 ORTHO05D004029 1.4e-10 69.3 71 54.9
Lj2A940G44 Lonicera japonica HOM05D000276 ORTHO05D004029 9.0e-10 66.6 60 66.7
Mapoly0008s0272 Marchantia polymorpha HOM05D000276 ORTHO05D004029 2.6e-09 65.1 66 56.1
Psat5g197520 Pisum sativum HOM05D000276 ORTHO05D004029 3.4e-09 64.7 69 50.7
PSO170G0794 Papaver somniferum HOM05D000276 ORTHO05D004029 1.0e-08 63.2 61 55.7
Gohir.A06G029301 Gossypium hirsutum HOM05D000276 ORTHO05D004029 2.5e-07 58.5 55 56.4
CBR_g5726 Chara braunii HOM05D000276 ORTHO05D004029 4.2e-07 57.8 73 47.9
Mapoly0008s0273 Marchantia polymorpha HOM05D000276 ORTHO05D004029 1.6e-06 55.8 55 56.4
Cre14.g619550 Chlamydomonas reinhardtii HOM05D000276 ORTHO05D004029 4.6e-06 54.3 71 42.3
MD14G1100200 Malus domestica HOM05D000276 ORTHO05D004029 6.0e-06 53.9 51 56.9


User provided reference genes

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