Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.5e-185 652.1 371 100.0
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.2e-184 649.8 337 100.0
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 3.3e-161 572.0 337 86.9
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.1e-159 567.0 322 88.8
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 1.4e-156 556.6 335 83.9
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 4.2e-156 555.1 330 86.1
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.9e-153 546.2 316 86.1
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.5e-153 545.8 335 82.1
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.8e-152 542.3 336 81.5
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.4e-151 540.0 334 80.8
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 2.4e-151 539.3 335 80.6
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 5.3e-151 538.1 335 80.3
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 6.9e-151 537.7 335 80.0
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 1.5e-150 536.6 336 80.1
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 2.0e-150 536.2 339 79.6
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 3.4e-150 535.4 328 83.2
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 4.5e-150 535.0 329 82.1
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.0e-149 533.9 327 81.7
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.4e-148 530.0 335 80.9
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.5e-148 529.3 338 79.0
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 3.2e-148 528.9 338 78.7
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-148 528.9 334 79.3
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 4.2e-148 528.5 337 79.8
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.2e-147 526.9 338 77.8
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.6e-147 526.6 328 79.6
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-147 526.6 332 79.5
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.6e-147 526.6 336 78.6
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.6e-147 526.6 336 78.6
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 2.1e-147 526.2 335 78.5
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.5e-147 525.4 326 80.1
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 4.6e-147 525.0 325 80.3
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 1.0e-146 523.9 338 78.7
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 2.3e-146 522.7 317 81.7
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 3.0e-146 522.3 335 78.8
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 3.9e-146 521.9 337 78.0
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 3.9e-146 521.9 337 78.3
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 5.1e-146 521.5 361 74.2
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 6.7e-146 521.2 330 80.0
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 8.7e-146 520.8 336 78.3
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 1.5e-145 520.0 320 80.9
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 3.3e-145 518.8 336 76.8
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 4.3e-145 518.5 331 77.6
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 4.3e-145 518.5 340 77.4
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 9.7e-145 517.3 328 78.7
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.6e-144 516.5 329 79.6
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.6e-144 516.5 341 76.2
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 2.2e-144 516.2 328 79.9
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 3.7e-144 515.4 334 78.4
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 4.8e-144 515.0 330 78.8
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.4e-143 513.5 326 77.9
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 1.4e-143 513.5 336 76.8
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 2.4e-143 512.7 325 79.1
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 6.9e-143 511.1 327 79.8
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 9.0e-143 510.8 330 77.9
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.5e-142 510.0 329 79.3
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.5e-142 510.0 342 76.9
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 7.7e-142 507.7 331 78.9
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 1.3e-141 506.9 322 80.1
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 8.5e-141 504.2 310 81.6
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 8.5e-141 504.2 335 75.2
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.9e-140 503.1 331 77.9
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 4.2e-140 501.9 331 75.8
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 5.5e-140 501.5 291 86.6
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 9.4e-140 500.7 329 76.3
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 9.4e-140 500.7 335 75.2
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 9.4e-140 500.7 331 76.1
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.6e-139 500.0 337 75.4
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.7e-139 499.2 318 77.7
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.7e-139 499.2 355 73.2
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.6e-139 498.8 331 75.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 7.9e-139 497.7 296 81.8
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.0e-138 497.3 304 81.9
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.8e-138 496.5 337 78.0
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 2.3e-138 496.1 326 76.7
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.5e-137 493.4 318 77.0
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 7.4e-137 491.1 321 77.9
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 9.7e-137 490.7 334 76.3
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.7e-136 490.0 330 74.2
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 2.8e-136 489.2 324 76.2
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.4e-135 486.9 329 74.2
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.1e-135 485.7 310 80.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 4.1e-135 485.3 324 75.6
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 5.3e-135 485.0 324 75.6
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.3e-135 485.0 329 73.9
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 9.1e-135 484.2 324 75.3
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.2e-134 483.8 324 75.3
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.2e-134 483.8 324 75.3
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.2e-134 483.8 324 75.3
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 2.6e-134 482.6 324 74.7
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 4.5e-134 481.9 324 75.0
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 4.5e-134 481.9 324 75.0
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 7.7e-134 481.1 322 75.2
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 7.7e-134 481.1 322 75.2
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 7.7e-134 481.1 322 75.2
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 7.7e-134 481.1 324 74.1
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.7e-133 479.9 324 74.7
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 3.8e-133 478.8 319 74.9
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 6.5e-133 478.0 307 79.8
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.9e-132 476.5 276 87.7
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.6e-129 466.1 362 67.4
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 5.7e-129 464.9 311 77.2
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.3e-128 463.8 319 73.7
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 2.8e-128 462.6 324 74.7
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-128 462.2 319 73.0
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 4.8e-128 461.8 354 70.9
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 6.3e-128 461.5 309 74.4
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.7e-125 453.4 311 74.6
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.7e-125 453.4 300 73.7
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 1.7e-125 453.4 335 70.1
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.1e-124 450.7 384 64.3
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.2e-120 436.4 315 67.6
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.8e-120 436.0 318 68.6
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 6.3e-120 434.9 318 67.9
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 2.0e-118 429.9 268 81.3
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 4.5e-118 428.7 313 67.7
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 5.9e-118 428.3 277 79.4
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.2e-116 422.2 330 69.4
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 1.2e-115 420.6 294 71.1
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.2e-115 420.6 295 74.6
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.6e-115 420.2 324 69.4
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 3.4e-113 412.5 255 81.2
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.5e-108 397.1 244 80.7
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.5e-108 396.4 338 64.5
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.6e-107 393.7 320 63.4
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 5.2e-106 388.7 235 83.8
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 8.8e-106 387.9 324 61.7
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 8.8e-106 387.9 324 61.7
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.4e-103 380.6 241 77.6
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 5.4e-103 378.6 336 62.2
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 7.0e-103 378.3 268 72.0
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.9e-96 355.5 240 77.9
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 8.6e-93 344.7 199 81.9
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.0e-90 337.8 204 79.9
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.8e-89 332.0 199 79.4
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 4.1e-87 325.9 335 55.2
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.2e-72 276.9 197 72.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.0e-70 268.9 262 59.9
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 2.0e-65 253.8 179 75.4
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 9.6e-60 235.0 147 74.8
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.3e-56 224.6 167 73.1
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.3e-42 176.0 100 84.0
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.8e-41 172.6 129 68.2
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.2e-40 170.6 129 66.7
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.5e-36 157.1 131 65.6
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.3e-35 154.8 120 63.3
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 6.3e-35 152.5 82 81.7
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.5e-31 140.6 128 66.4
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-31 140.6 117 70.9
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.6e-30 137.9 99 70.7
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 7.9e-30 135.6 119 58.0
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.4e-26 124.0 265 30.2
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.1e-22 109.4 88 68.2
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 6.1e-22 109.4 86 64.0
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 5.3e-18 96.3 79 72.2
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 6.9e-18 95.9 79 62.0
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.1e-18 95.5 68 63.2
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.6e-17 94.0 56 69.6
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 7.2e-15 85.9 52 73.1
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 5.2e-13 79.7 73 65.8


User provided reference genes

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