Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 5.1e-45 184.9 165 100.0
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 8.9e-42 174.1 167 97.0
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.1e-26 124.0 160 63.1
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.4e-26 123.6 160 52.5
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 4.9e-24 115.2 134 67.2
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 6.4e-24 114.8 106 67.0
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.4e-23 112.8 171 44.4
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 7.1e-23 111.3 167 53.9
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.6e-22 110.2 160 68.1
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 2.1e-22 109.8 135 73.3
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.0e-21 107.5 160 43.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 2.1e-19 99.8 136 58.1
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 2.1e-19 99.8 161 51.6
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 2.8e-19 99.4 163 55.8
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 3.6e-19 99.0 130 47.7
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 8.1e-19 97.8 167 55.1
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.8e-18 96.7 134 46.3
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.8e-18 96.7 134 57.5
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.4e-18 96.3 68 75.0
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 4.0e-18 95.5 106 52.8
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 5.3e-18 95.1 106 50.9
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 5.3e-18 95.1 135 73.3
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 5.3e-18 95.1 135 73.3
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 6.9e-18 94.7 72 68.1
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 7.6e-17 91.3 72 69.4
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 3.8e-16 89.0 70 64.3
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 4.9e-16 88.6 134 53.0
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.4e-16 87.8 70 64.3
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.4e-15 87.0 67 71.6
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 3.2e-15 85.9 84 60.7
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 4.2e-15 85.5 133 42.1
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 5.5e-15 85.1 132 42.4
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 7.1e-15 84.7 72 65.3
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 7.1e-15 84.7 73 64.4
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.3e-15 84.3 66 66.7
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.2e-14 84.0 130 56.2
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.2e-14 84.0 74 60.8
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 2.1e-14 83.2 104 51.0
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.1e-14 83.2 165 45.5
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.1e-14 83.2 73 63.0
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 2.1e-14 83.2 66 71.2
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 2.1e-14 83.2 101 60.4
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.7e-14 82.8 71 62.0
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 2.7e-14 82.8 66 72.7
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 4.6e-14 82.0 133 40.6
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 6.0e-14 81.6 73 58.9
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 6.0e-14 81.6 165 47.9
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 6.0e-14 81.6 80 61.2
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.0e-13 80.9 133 54.1
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.0e-13 80.9 67 59.7
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.3e-13 80.5 98 46.9
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.8e-13 80.1 73 58.9
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.8e-13 80.1 171 44.4
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.8e-13 80.1 75 57.3
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.3e-13 79.7 73 58.9
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 2.3e-13 79.7 167 52.1
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 2.3e-13 79.7 71 64.8
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 3.0e-13 79.3 74 58.1
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 3.0e-13 79.3 74 58.1
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 3.0e-13 79.3 74 62.2
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 5.1e-13 78.6 72 58.3
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 5.1e-13 78.6 73 57.5
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 5.1e-13 78.6 73 57.5
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 5.1e-13 78.6 73 57.5
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 5.1e-13 78.6 73 57.5
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 5.1e-13 78.6 73 57.5
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 1.1e-12 77.4 72 59.7
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.5e-12 77.0 73 54.8
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.5e-12 77.0 107 48.6
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.5e-12 77.0 91 49.5
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.9e-12 76.6 74 55.4
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.9e-12 76.6 73 56.2
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.9e-12 76.6 132 64.4
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.9e-12 76.6 73 58.9
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.9e-12 76.6 76 60.5
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.5e-12 76.3 74 55.4
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 2.5e-12 76.3 73 54.8
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 2.5e-12 76.3 73 54.8
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 2.5e-12 76.3 73 54.8
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.5e-12 76.3 74 54.1
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.5e-12 76.3 73 56.2
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.5e-12 76.3 72 56.9
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 3.3e-12 75.9 75 52.0
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 3.3e-12 75.9 74 56.8
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 3.3e-12 75.9 61 67.2
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 3.3e-12 75.9 75 57.3
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 4.3e-12 75.5 68 57.4
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 5.6e-12 75.1 74 56.8
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-12 74.7 74 55.4
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-12 74.7 74 55.4
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-12 74.7 74 55.4
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 7.4e-12 74.7 74 55.4
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 9.6e-12 74.3 72 55.6
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 9.6e-12 74.3 71 60.6
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 9.6e-12 74.3 80 53.8
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 9.6e-12 74.3 79 50.6
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 9.6e-12 74.3 76 53.9
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 9.6e-12 74.3 139 48.2
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-11 73.6 73 53.4
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 1.6e-11 73.6 76 59.2
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.6e-11 73.6 71 59.2
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.7e-11 72.4 75 57.3
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 3.7e-11 72.4 78 55.1
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 3.7e-11 72.4 74 52.7
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 3.7e-11 72.4 73 49.3
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.8e-11 72.0 130 37.7
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 4.8e-11 72.0 137 54.7
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 4.8e-11 72.0 68 63.2
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.8e-11 72.0 75 54.7
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 4.8e-11 72.0 69 56.5
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 6.2e-11 71.6 77 50.6
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 8.1e-11 71.2 68 60.3
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.1e-10 70.9 132 62.1
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.1e-10 70.9 68 60.3
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.1e-10 70.9 72 52.8
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.1e-10 70.9 68 58.8
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.4e-10 70.5 71 53.5
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.4e-10 70.5 71 54.9
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.8e-10 70.1 77 49.4
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 2.4e-10 69.7 74 51.4
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 2.4e-10 69.7 74 51.4
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.4e-10 69.7 71 53.5
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.4e-10 69.7 71 53.5
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 3.1e-10 69.3 70 54.3
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.1e-10 69.3 71 49.3
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 3.1e-10 69.3 71 53.5
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.0e-10 68.9 75 50.7
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 5.3e-10 68.6 71 56.3
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 6.9e-10 68.2 74 52.7
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 9.0e-10 67.8 71 47.9
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.2e-09 67.4 68 55.9
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 1.2e-09 67.4 72 54.2
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.5e-09 67.0 71 54.9
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.5e-09 67.0 71 54.9
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.0e-09 66.6 80 46.2
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.0e-09 66.6 72 51.4
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 2.6e-09 66.2 74 48.6
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 2.6e-09 66.2 68 55.9
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 3.4e-09 65.9 71 52.1
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 3.4e-09 65.9 76 51.3
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 4.5e-09 65.5 70 52.9
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 4.5e-09 65.5 70 52.9
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 4.5e-09 65.5 70 52.9
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 4.5e-09 65.5 72 44.4
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 4.5e-09 65.5 73 49.3
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 4.5e-09 65.5 77 48.1
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 4.5e-09 65.5 71 50.7
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 5.8e-09 65.1 68 52.9
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 5.8e-09 65.1 137 70.8
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.6e-09 64.7 72 51.4
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.6e-09 64.7 72 51.4
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.3e-08 63.9 71 52.1
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.3e-08 63.9 103 40.8
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.3e-08 63.9 68 51.5
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.2e-08 63.2 80 48.8
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 2.9e-08 62.8 71 53.5
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.9e-08 62.8 72 52.8
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 2.9e-08 62.8 65 52.3
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 3.8e-08 62.4 70 50.0
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 4.9e-08 62.0 68 51.5
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 6.5e-08 61.6 65 50.8
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.1e-07 60.8 72 50.0
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.1e-07 60.8 104 40.4
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.1e-07 60.8 68 50.0
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.4e-07 60.5 67 49.3
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 4.2e-07 58.9 73 43.8
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 5.5e-07 58.5 69 43.5
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 5.5e-07 58.5 69 43.5
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 7.1e-07 58.2 66 48.5
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 1.2e-06 57.4 131 40.5
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 3.5e-06 55.8 70 48.6
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 6.0e-06 55.1 74 45.9


User provided reference genes

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