Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 3.2e-220 768.1 380 100.0
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 9.1e-199 696.8 350 98.6
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.6e-163 579.7 402 74.6
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.9e-159 566.2 402 72.4
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 2.4e-159 565.8 402 74.1
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.9e-156 556.2 402 71.1
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 3.6e-155 552.0 391 72.1
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 5.2e-154 548.1 398 71.6
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.2e-153 547.0 407 70.0
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 2.0e-153 546.2 403 70.0
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 3.4e-153 545.4 401 70.6
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 5.8e-153 544.7 403 69.7
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 5.8e-153 544.7 402 71.6
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 1.3e-152 543.5 402 69.9
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.7e-152 543.1 402 70.1
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 8.4e-152 540.8 409 69.9
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.9e-151 539.7 403 69.7
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.4e-151 539.3 417 68.1
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 1.2e-150 537.0 390 71.5
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 2.1e-150 536.2 403 69.0
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.8e-150 534.3 440 64.8
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 3.9e-149 531.9 407 68.6
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 3.9e-149 531.9 407 68.6
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 6.6e-149 531.2 419 66.8
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 1.9e-148 529.6 402 68.2
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 3.3e-148 528.9 389 69.9
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 3.3e-148 528.9 402 68.7
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 4.3e-148 528.5 401 69.1
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 5.6e-148 528.1 402 68.9
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 7.3e-148 527.7 402 67.9
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 9.6e-148 527.3 402 68.4
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 2.1e-147 526.2 383 71.0
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 2.8e-147 525.8 411 66.2
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 4.7e-147 525.0 388 70.1
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 4.7e-147 525.0 384 71.6
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 6.2e-147 524.6 410 66.8
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 8.1e-147 524.2 402 68.4
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 8.1e-147 524.2 401 67.1
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.1e-146 523.9 396 68.9
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 1.4e-146 523.5 404 66.6
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.8e-146 523.1 402 67.2
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 1.8e-146 523.1 403 67.7
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 1.8e-146 523.1 402 67.4
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 3.1e-146 522.3 400 66.5
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 4.0e-146 521.9 402 67.4
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 4.0e-146 521.9 401 68.1
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 4.0e-146 521.9 402 66.9
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 5.2e-146 521.5 403 67.2
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 5.2e-146 521.5 402 67.4
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 9.0e-146 520.8 401 66.3
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.2e-145 520.4 396 68.2
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 1.2e-145 520.4 412 65.8
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 1.2e-145 520.4 401 66.8
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 3.4e-145 518.8 411 66.9
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 7.6e-145 517.7 400 67.0
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 9.9e-145 517.3 432 63.0
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 1.3e-144 516.9 401 66.6
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 1.3e-144 516.9 402 65.9
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 1.3e-144 516.9 401 66.3
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 1.7e-144 516.5 411 65.0
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 2.9e-144 515.8 395 68.4
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 3.8e-144 515.4 425 64.0
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 8.4e-144 514.2 401 67.1
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 3.2e-143 512.3 391 66.0
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 5.4e-143 511.5 391 66.0
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 5.4e-143 511.5 395 67.3
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 5.4e-143 511.5 401 65.8
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 7.1e-143 511.1 400 67.2
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 9.3e-143 510.8 402 65.7
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 4.6e-142 508.4 395 67.3
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 4.6e-142 508.4 391 66.0
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 6.0e-142 508.1 397 66.8
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 6.0e-142 508.1 401 65.6
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.0e-141 507.3 402 65.2
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.7e-141 506.5 394 66.2
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 3.0e-141 505.8 396 66.7
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 3.9e-141 505.4 402 65.7
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 9.6e-140 500.7 402 65.2
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 1.3e-139 500.4 406 65.8
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 1.3e-139 500.4 384 67.2
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 2.8e-139 499.2 363 72.2
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 2.8e-139 499.2 395 64.1
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 2.8e-139 499.2 384 66.7
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 8.1e-139 497.7 396 64.4
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.4e-138 496.9 395 65.3
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.8e-138 496.5 401 65.6
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.8e-138 496.5 401 65.6
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 5.3e-138 495.0 392 64.5
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 9.0e-138 494.2 395 63.8
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 1.2e-137 493.8 395 63.5
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.2e-137 493.8 392 66.6
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 2.6e-137 492.7 396 63.4
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 2.6e-137 492.7 396 63.4
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 5.8e-137 491.5 390 64.4
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.7e-136 490.0 396 62.9
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 2.2e-136 489.6 385 65.2
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 4.2e-135 485.3 388 65.2
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 1.2e-134 483.8 396 62.9
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 1.3e-133 480.3 395 64.1
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 3.0e-133 479.2 413 60.0
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 1.1e-132 477.2 450 59.3
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 5.6e-132 474.9 389 62.5
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 5.6e-132 474.9 389 62.5
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 2.4e-130 469.5 491 54.4
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 6.9e-130 468.0 430 58.4
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 3.4e-129 465.7 393 62.8
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 4.9e-128 461.8 357 66.4
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 1.2e-126 457.2 410 59.0
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 1.6e-126 456.8 389 61.7
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 4.6e-126 455.3 350 67.4
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 1.0e-125 454.1 350 68.0
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 2.5e-124 449.5 394 59.9
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 1.1e-122 444.1 350 66.6
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 1.1e-122 444.1 381 61.4
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.0e-120 437.6 360 63.1
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 4.2e-119 432.2 399 57.1
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 1.2e-118 430.6 381 62.5
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 2.9e-112 409.5 409 52.6
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 4.8e-107 392.1 394 51.8
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.1e-106 391.0 312 65.4
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 1.4e-106 390.6 413 52.1
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 7.2e-103 378.3 402 51.2
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 2.3e-101 373.2 389 51.2
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 1.7e-96 357.1 364 54.9
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 2.8e-91 339.7 350 55.4
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 2.6e-89 333.2 229 72.5
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 7.5e-84 315.1 191 81.7
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 2.2e-83 313.5 399 43.4
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.8e-83 312.4 363 51.5
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 1.5e-79 300.8 191 77.5
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 1.6e-78 297.4 407 43.5
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 2.7e-78 296.6 198 73.7
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 9.1e-74 281.6 405 44.0
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 4.5e-73 279.3 447 39.4
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 2.9e-72 276.6 277 55.6
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 3.3e-71 273.1 363 48.2
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.4e-69 267.7 253 58.1
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 3.4e-68 263.1 255 56.9
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 3.2e-58 229.9 454 35.5
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.7e-56 224.2 210 56.7
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 3.2e-50 203.4 423 35.7
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 4.1e-50 203.0 354 38.1
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 1.6e-46 191.0 153 61.4
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 2.8e-46 190.3 153 60.8
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 4.0e-45 186.4 178 59.6
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.4e-42 177.9 112 80.4
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 3.5e-41 173.3 215 53.0
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 3.0e-40 170.2 175 53.1
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.1e-38 164.1 337 36.2
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 2.4e-37 160.6 117 70.1
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.5e-33 146.7 182 46.7
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 6.0e-33 146.0 239 37.7
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 1.1e-31 141.7 85 77.6
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 2.4e-26 124.0 266 31.6
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.7e-24 117.9 253 33.2
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 4.0e-21 106.7 66 75.8
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 1.1e-18 98.6 66 68.2
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 3.2e-18 97.1 60 71.7
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 1.3e-14 85.1 59 69.5
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 2.8e-14 84.0 117 42.7
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 3.7e-14 83.6 69 62.3
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 1.0e-11 75.5 219 27.4
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 2.2e-11 74.3 47 61.7
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.9e-10 71.2 43 74.4
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 1.8e-08 64.7 39 82.1
SMO140G0050 Selaginella moellendorffii HOM05D003484 ORTHO05D004152 9.6e-07 58.9 187 26.7
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 1.3e-06 58.5 53 58.5
SGA_v2.0_scaffold1G00349 Striga asiatica HOM05D000783 ORTHO05D000705 3.7e-06 57.0 107 29.0
CAN.G472.28 Capsicum annuum HOM05D000783 ORTHO05D000705 4.8e-06 56.6 107 30.8
SalBow1G0941 Salvia bowleyana HOM05D003484 ORTHO05D004152 4.8e-06 56.6 128 27.3
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 8.2e-06 55.8 53 58.5


User provided reference genes

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