Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.5e-111 406.4 224 100.0
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.6e-110 401.7 224 99.1
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 2.1e-94 349.4 219 87.7
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 8.0e-94 347.4 224 74.1
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 1.8e-93 346.3 221 78.3
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 2.3e-93 345.9 225 76.0
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 2.0e-92 342.8 222 76.6
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 7.5e-92 340.9 224 73.7
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 9.8e-92 340.5 221 76.5
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 2.2e-91 339.3 221 74.2
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 4.1e-90 335.1 221 74.2
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 1.2e-89 333.6 224 72.8
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 5.9e-89 331.3 219 74.4
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 3.8e-88 328.6 221 73.8
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 1.5e-87 326.6 224 81.2
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 4.3e-87 325.1 219 74.0
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.4e-85 320.1 213 75.6
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 4.0e-85 318.5 224 79.9
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 5.2e-85 318.2 219 80.4
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 8.9e-85 317.4 219 69.4
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.6e-84 315.8 215 72.6
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 9.8e-84 313.9 220 68.6
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.9e-83 312.4 220 71.8
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 1.1e-82 310.5 214 81.8
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 2.4e-82 309.3 220 70.5
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 4.6e-81 305.1 220 69.5
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 4.6e-81 305.1 220 68.2
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 5.9e-81 304.7 215 69.8
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.7e-80 303.1 213 79.8
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 2.3e-80 302.8 220 68.6
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 3.0e-80 302.4 222 77.5
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 8.6e-80 300.8 219 79.0
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 8.6e-80 300.8 215 80.5
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.5e-79 299.3 214 70.6
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 3.3e-79 298.9 213 79.3
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 3.3e-79 298.9 213 79.3
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 3.3e-79 298.9 220 67.3
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 4.3e-79 298.5 220 65.5
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 5.6e-79 298.1 217 69.6
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 7.3e-79 297.7 214 70.6
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.2e-78 297.0 222 76.1
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.8e-78 295.8 214 70.1
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 3.6e-78 295.4 215 67.4
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.7e-78 295.0 214 69.6
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 4.7e-78 295.0 220 65.9
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 6.2e-78 294.7 214 67.3
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 8.0e-78 294.3 220 65.9
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 8.0e-78 294.3 205 69.3
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.0e-77 293.9 220 69.1
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.0e-77 293.9 220 75.9
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.0e-77 293.9 221 67.0
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.8e-77 293.1 218 76.1
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 1.8e-77 293.1 214 68.2
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.8e-77 293.1 220 70.0
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.8e-77 293.1 220 70.0
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 2.3e-77 292.7 220 76.8
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 8.9e-77 290.8 219 72.6
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 2.0e-76 289.7 220 67.7
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.0e-76 289.7 219 67.1
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 2.6e-76 289.3 217 76.0
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 3.4e-76 288.9 224 64.3
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 5.8e-76 288.1 217 75.1
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 9.8e-76 287.3 218 65.6
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 1.3e-75 287.0 220 67.3
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 1.7e-75 286.6 215 68.8
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 2.2e-75 286.2 220 65.5
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 2.2e-75 286.2 220 75.0
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 2.9e-75 285.8 216 69.4
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 8.3e-75 284.3 218 76.6
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 8.3e-75 284.3 159 84.3
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 4.1e-74 282.0 216 72.7
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 5.4e-74 281.6 188 70.2
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 7.0e-74 281.2 212 66.0
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 7.0e-74 281.2 213 65.7
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 7.0e-74 281.2 213 65.7
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 7.0e-74 281.2 218 76.1
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 9.2e-74 280.8 213 65.7
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.2e-73 280.4 219 75.3
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 1.6e-73 280.0 213 65.3
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 1.3e-72 276.9 211 65.9
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.3e-72 276.9 220 72.3
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.3e-72 276.9 213 64.8
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 1.7e-72 276.6 217 63.1
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 2.3e-72 276.2 212 65.6
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 2.3e-72 276.2 212 65.6
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 3.0e-72 275.8 213 76.1
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 5.0e-72 275.0 212 65.1
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 5.0e-72 275.0 214 66.4
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 8.6e-72 274.2 218 64.7
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 8.6e-72 274.2 218 64.7
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 8.6e-72 274.2 218 64.7
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 8.6e-72 274.2 218 64.7
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 8.6e-72 274.2 218 64.7
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.5e-71 273.5 219 74.4
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.9e-71 273.1 212 62.7
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 2.5e-71 272.7 211 65.4
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 2.5e-71 272.7 225 60.9
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 4.3e-71 271.9 217 63.6
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 5.6e-71 271.6 220 64.1
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 5.6e-71 271.6 215 74.4
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 7.3e-71 271.2 223 60.1
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.2e-70 270.4 223 60.1
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 3.6e-70 268.9 214 63.1
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 1.1e-69 267.3 213 72.3
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 1.1e-69 267.3 213 72.3
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 1.4e-69 266.9 222 74.3
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 5.8e-68 261.5 215 61.4
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 1.3e-67 260.4 212 62.3
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 3.2e-66 255.8 215 60.0
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 7.1e-66 254.6 220 70.5
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 1.0e-64 250.8 211 60.2
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 2.5e-63 246.1 218 59.2
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 2.5e-63 246.1 219 68.9
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 2.8e-62 242.7 220 58.2
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 3.6e-62 242.3 210 61.0
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.7e-59 232.3 212 55.2
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 2.4e-58 229.6 210 53.8
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 3.9e-56 222.2 218 53.2
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 5.1e-56 221.9 159 69.2
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.1e-55 220.7 158 70.3
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 1.2e-54 217.2 210 51.4
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.8e-54 216.1 212 48.1
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.4e-53 213.0 213 47.9
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.7e-51 206.8 218 62.4
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 4.9e-51 205.3 164 62.8
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 8.4e-51 204.5 156 63.5
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 2.1e-49 199.9 214 60.3
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.5e-47 193.0 167 68.9
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 2.5e-47 193.0 133 71.4
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 8.1e-46 188.0 127 70.9
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 4.0e-45 185.7 211 50.2
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.5e-44 183.7 138 70.3
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 2.0e-44 183.3 166 57.8
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 1.4e-42 177.2 97 87.6
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 6.0e-41 171.8 216 57.9
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 1.9e-39 166.8 101 80.2
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 3.3e-39 166.0 131 62.6
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 5.6e-31 138.7 98 90.8
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 5.9e-12 75.5 206 32.5


User provided reference genes

Program Settings