Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.5e-101 372.9 187 100.0
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 6.2e-100 367.5 187 97.9
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 5.8e-98 360.9 187 95.2
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 1.0e-97 360.1 187 95.2
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 93.6
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 93.6
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 93.6
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 2.2e-97 359.0 187 95.2
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 93.0
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 3.8e-97 358.2 186 94.1
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 92.5
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 93.0
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 93.0
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 6.5e-97 357.5 187 93.6
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 93.6
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 94.1
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 93.0
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.4e-96 356.3 187 93.6
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 1.4e-96 356.3 187 92.5
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.4e-96 356.3 187 94.7
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 93.6
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 93.6
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 93.6
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 93.6
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 93.6
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 93.6
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 94.7
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 93.0
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.5
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.5
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 94.1
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.5
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 95.2
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 93.0
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 92.0
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 93.6
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 92.5
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 93.0
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 9.3e-96 353.6 187 94.7
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 92.5
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 92.0
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 92.5
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 93.0
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 92.5
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 93.0
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 92.5
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 92.5
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 92.0
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 91.4
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 92.5
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 93.0
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 92.5
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.0e-94 350.1 200 87.5
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 1.0e-94 350.1 184 93.5
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 93.0
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 91.4
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 91.4
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.3e-94 349.0 182 94.0
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 91.4
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 3.0e-94 348.6 187 92.0
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 3.0e-94 348.6 187 91.4
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 91.4
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 91.4
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 92.0
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 90.9
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 91.4
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 90.9
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 1.1e-93 346.7 196 89.3
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 91.4
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 92.0
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 89.8
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 90.4
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 92.0
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 90.4
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 90.9
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 3.3e-93 345.1 186 90.9
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 89.8
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 90.4
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 89.8
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 90.4
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 7.4e-93 344.0 185 91.9
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 89.8
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 89.8
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 89.8
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 89.8
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 89.8
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 9.6e-93 343.6 193 88.6
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 89.3
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 90.4
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 89.3
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 89.3
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 8.2e-92 340.5 201 86.6
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 8.2e-92 340.5 187 88.2
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 88.2
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 1.1e-91 340.1 186 90.3
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 88.8
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 87.7
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 88.8
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 87.7
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 9.0e-91 337.0 181 91.2
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 9.0e-91 337.0 206 84.0
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.5e-90 336.3 203 84.2
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 86.6
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 87.7
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 2.6e-90 335.5 187 87.7
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 3.4e-90 335.1 187 86.6
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 86.1
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 5.8e-90 334.3 187 86.6
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 5.8e-90 334.3 185 87.0
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 7.6e-90 334.0 185 86.5
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 2.2e-89 332.4 206 82.0
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.9e-89 332.0 187 87.2
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.1e-88 330.1 182 87.4
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.1e-88 330.1 182 87.4
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.4e-88 329.7 208 81.2
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.6e-87 326.2 187 85.0
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 4.6e-87 324.7 183 88.0
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 3.9e-86 321.6 186 83.3
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.1e-85 320.1 181 88.4
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 1.9e-85 319.3 241 69.7
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 7.4e-85 317.4 211 77.7
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 9.7e-85 317.0 173 88.4
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 6.9e-83 310.8 169 88.8
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 4.5e-82 308.1 185 80.5
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 1.6e-79 299.7 187 77.5
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 3.6e-79 298.5 187 77.0
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 3.6e-79 298.5 187 77.0
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 6.7e-78 294.3 187 75.9
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 1.5e-77 293.1 187 81.3
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.3e-77 292.0 187 80.2
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 1.7e-76 289.7 187 75.9
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 6.3e-76 287.7 186 80.1
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 8.2e-76 287.3 187 79.7
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.4e-75 286.6 154 90.9
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.4e-75 285.8 172 79.1
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 9.1e-75 283.9 158 89.2
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 1.2e-74 283.5 149 95.3
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 3.2e-72 275.4 187 74.9
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 3.2e-72 275.4 172 76.2
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 5.5e-72 274.6 187 75.9
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 3.3e-69 265.4 148 86.5
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 2.4e-67 259.2 214 60.7
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 8.5e-65 250.8 158 77.2
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 3.2e-64 248.8 187 70.6
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.7e-60 236.5 187 67.4
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 2.8e-60 235.7 185 60.5
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 5.9e-58 228.0 124 91.1
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.7e-52 209.9 133 77.4
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.6e-50 203.4 103 93.2
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 1.5e-48 196.8 167 55.1
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.2e-47 193.7 98 91.8
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 4.7e-47 191.8 106 89.6
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 2.3e-46 189.5 139 68.3
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 5.2e-46 188.3 181 59.1
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 8.8e-46 187.6 175 53.7
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 7.0e-43 177.9 103 80.6
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 1.0e-41 174.1 98 83.7
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 3.6e-39 165.6 85 96.5
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 1.5e-29 133.7 142 55.6
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 3.4e-21 105.9 68 70.6
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 4.1e-19 99.0 52 94.2
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 5.4e-19 98.6 52 96.2
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 1.1e-16 90.9 49 91.8
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 1.4e-14 84.0 45 91.1
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 6.8e-14 81.6 47 85.1
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 8.9e-14 81.3 41 92.7
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 9.9e-13 77.8 92 51.1
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 3.7e-12 75.9 68 55.9
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 4.9e-12 75.5 41 85.4
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 5.4e-11 72.0 39 82.1


User provided reference genes

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