Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 8.4e-188 660.2 339 100.0
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 2.5e-179 632.1 369 90.5
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 2.1e-101 373.2 355 59.7
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 3.9e-92 342.4 408 50.7
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 4.9e-71 272.3 332 49.4
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 6.7e-68 261.9 208 67.8
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 1.1e-67 261.2 362 44.8
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 2.6e-64 250.0 391 43.2
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 2.9e-63 246.5 367 43.9
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 1.9e-62 243.8 376 43.4
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 1.5e-59 234.2 400 38.2
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 4.8e-58 229.2 398 36.9
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 1.4e-54 217.6 313 41.5
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 1.9e-54 217.2 326 42.0
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 2.5e-54 216.9 368 36.7
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 7.2e-54 215.3 316 42.7
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 7.2e-54 215.3 370 38.6
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 1.2e-53 214.5 371 38.0
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 1.6e-53 214.2 318 43.1
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 4.7e-53 212.6 364 35.7
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 7.9e-53 211.8 368 36.7
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 2.0e-51 207.2 235 48.1
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 5.7e-51 205.7 353 39.4
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 5.7e-51 205.7 388 39.2
Peaxi162Scf00001g00251 Petunia axillaris HOM05D008757 ORTHO05D010583 7.4e-51 205.3 356 40.2
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 6.3e-50 202.2 162 64.2
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 1.9e-46 190.7 353 36.8
Cc08_g11800 Coffea canephora HOM05D008757 ORTHO05D010583 8.0e-45 185.3 301 40.9
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 4.4e-43 179.5 349 39.0
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 7.4e-43 178.7 335 36.7
Aqoxy3G01114 Aquilegia oxysepala HOM05D008757 ORTHO05D010583 2.4e-41 173.7 319 36.7
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 2.0e-40 170.6 318 37.4
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 1.7e-39 167.5 160 53.8
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 5.5e-38 162.5 272 37.9
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 2.1e-37 160.6 272 38.2
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 3.0e-36 156.8 272 37.9
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 6.7e-36 155.6 287 37.3
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 2.0e-35 154.1 272 37.1
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 2.6e-35 153.7 272 37.5
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 4.4e-35 152.9 271 37.6
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 1.7e-26 124.4 331 26.6
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 4.5e-24 116.3 104 60.6
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 2.1e-21 107.5 298 31.5
PGR119G0138 Punica granatum HOM05D008757 ORTHO05D010583 1.4e-20 104.8 286 33.2
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 2.0e-19 100.9 378 26.5
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 5.7e-19 99.4 135 40.7
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 5.7e-19 99.4 291 29.9
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 7.5e-19 99.0 135 40.0
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 9.8e-19 98.6 138 42.0
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 1.3e-18 98.2 135 40.0
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 1.7e-18 97.8 135 40.7
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 1.1e-17 95.1 130 39.2
Thhalv10006051m.g Eutrema salsugineum HOM05D012658 ORTHO05D010583 1.1e-17 95.1 161 36.0
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 1.4e-17 94.7 310 27.7
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 1.8e-17 94.4 138 41.3
A05p34600 Brassica napus HOM05D012658 ORTHO05D010583 9.2e-17 92.0 142 39.4
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 4.0e-12 76.6 197 26.4
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 5.8e-11 72.8 174 28.2
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 4.6e-08 63.2 242 22.7
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 1.9e-06 57.8 146 26.0


User provided reference genes

Program Settings