Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 6.3e-275 950.3 521 100.0
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.8e-157 560.1 495 68.5
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 1.9e-146 523.5 519 59.9
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 9.7e-143 511.1 518 61.0
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.2e-135 487.6 536 59.0
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 6.5e-131 471.9 534 57.9
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.1e-129 466.8 533 55.2
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.8e-128 463.8 529 57.5
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 2.3e-128 463.4 535 55.0
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 5.2e-128 462.2 521 55.7
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 6.3e-126 455.3 529 56.3
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 3.1e-125 453.0 521 55.7
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 4.1e-125 452.6 528 55.5
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 7.0e-125 451.8 528 53.4
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 9.1e-125 451.4 523 52.2
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.9e-124 448.7 461 57.9
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.3e-123 447.6 512 57.8
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 3.8e-123 446.0 520 53.5
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.8e-123 446.0 532 53.4
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.5e-122 444.1 526 55.3
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.2e-122 442.6 521 53.9
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 5.5e-122 442.2 473 59.4
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 2.8e-121 439.9 519 53.0
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 8.0e-121 438.3 547 51.4
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.4e-120 437.6 524 54.4
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 3.4e-119 433.0 552 56.7
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.3e-118 431.0 534 54.3
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.7e-118 430.6 525 51.4
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 2.2e-118 430.3 535 51.4
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 3.7e-118 429.5 528 54.7
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 8.3e-118 428.3 526 52.9
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 2.4e-117 426.8 531 51.4
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 7.0e-117 425.2 465 57.2
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 1.2e-116 424.5 534 51.5
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.6e-116 424.1 572 53.1
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.0e-115 419.1 559 54.9
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.5e-114 417.5 538 51.7
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.5e-114 417.5 511 50.7
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 5.6e-114 415.6 539 51.0
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.6e-114 415.6 465 55.5
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.6e-114 415.6 465 55.3
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.6e-113 414.1 408 58.6
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 2.1e-113 413.7 526 49.4
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 2.1e-113 413.7 350 67.7
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 4.7e-113 412.5 527 50.3
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.1e-113 412.1 552 53.8
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 8.0e-113 411.8 533 51.0
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.4e-112 411.0 526 50.0
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.4e-112 411.0 530 54.7
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.4e-109 401.0 532 53.4
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 7.0e-109 398.7 528 54.2
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.9e-107 392.9 465 53.8
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 2.5e-106 390.2 471 53.5
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.3e-106 389.8 516 47.9
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 4.3e-106 389.4 523 50.1
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 4.3e-106 389.4 527 48.4
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 9.5e-106 388.3 515 48.3
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 4.7e-105 386.0 519 48.0
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.1e-104 384.8 525 48.0
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 2.3e-104 383.6 530 53.8
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.3e-104 383.6 530 53.6
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.2e-104 382.5 366 60.1
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 8.9e-104 381.7 368 59.0
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 2.6e-103 380.2 457 54.5
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 4.4e-103 379.4 517 49.1
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.4e-103 379.4 509 48.1
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 7.5e-103 378.6 473 52.4
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.2e-102 377.1 369 58.5
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 9.2e-101 371.7 518 46.1
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.6e-100 369.4 524 47.3
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 5.1e-99 365.9 536 50.6
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 2.5e-98 363.6 469 49.5
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 4.3e-98 362.8 521 45.7
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 4.3e-98 362.8 518 48.1
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 5.6e-98 362.5 387 56.8
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.6e-97 360.9 365 56.4
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.8e-97 360.1 476 49.8
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.8e-96 357.5 515 48.3
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 2.3e-96 357.1 520 45.2
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 5.2e-96 355.9 504 47.4
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.0e-95 354.0 551 47.0
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.0e-95 354.0 361 57.1
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 3.4e-95 353.2 367 55.6
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.7e-94 350.9 463 49.2
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 8.3e-94 348.6 363 55.6
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.4e-93 347.8 553 46.3
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 7.1e-93 345.5 478 51.0
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.2e-92 344.7 452 49.6
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 1.2e-92 344.7 460 48.0
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 7.8e-92 342.0 518 45.4
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 1.0e-91 341.7 508 44.9
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 5.6e-90 335.9 391 53.7
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 7.3e-90 335.5 524 44.7
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 9.6e-90 335.1 537 45.8
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 2.1e-89 334.0 471 48.4
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 6.2e-89 332.4 470 47.0
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 8.9e-88 328.6 458 46.9
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.9e-88 328.6 495 44.0
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.2e-87 328.2 458 46.7
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 5.8e-87 325.9 537 42.5
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 2.2e-86 323.9 521 42.4
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 7.1e-85 318.9 528 43.9
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 7.1e-85 318.9 528 43.9
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 7.1e-85 318.9 528 43.9
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 3.0e-83 313.5 452 44.5
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 7.3e-82 308.9 306 56.5
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.6e-81 307.8 410 47.1
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.8e-81 307.0 370 49.5
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.8e-80 304.3 464 43.8
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.8e-80 304.3 464 43.8
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.8e-80 304.3 464 43.8
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 2.4e-80 303.9 479 44.9
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.5e-79 301.2 530 40.0
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 3.4e-79 300.1 399 47.4
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.4e-79 299.7 243 68.3
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 2.9e-78 297.0 368 48.9
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 3.8e-78 296.6 369 49.6
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 3.8e-78 296.6 365 50.4
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 4.9e-78 296.2 519 41.4
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 4.9e-78 296.2 370 48.6
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.4e-77 292.7 442 42.8
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 3.5e-76 290.0 349 49.6
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.3e-75 288.1 518 40.5
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 3.0e-75 287.0 342 49.7
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 5.6e-74 282.7 525 40.6
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 5.6e-74 282.7 525 40.6
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.3e-73 281.6 377 49.1
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 3.6e-73 280.0 524 39.3
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.1e-72 278.5 320 51.9
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.8e-72 277.7 521 39.0
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 5.3e-72 276.2 378 47.6
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 9.9e-71 271.9 314 51.9
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.7e-68 263.8 458 41.5
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.1e-64 250.4 300 53.3
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 4.0e-64 250.0 333 46.8
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 2.1e-60 237.7 454 37.4
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 5.1e-59 233.0 300 45.7
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.5e-58 231.5 456 36.4
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.5e-55 221.5 176 70.5
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.9e-53 214.5 534 33.3
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.9e-53 214.5 534 33.3
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 9.7e-50 202.2 489 34.6
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.5e-38 162.9 510 29.2
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.3e-35 154.5 317 36.3
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.0e-35 154.1 508 27.0
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.8e-35 152.5 418 29.2
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.0e-34 151.4 181 50.8
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 7.4e-34 149.4 181 49.2
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 7.4e-34 149.4 309 35.3
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.4e-32 145.2 310 36.1
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.4e-32 145.2 305 34.1
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 1.3e-30 138.7 123 58.5
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.7e-30 138.3 598 25.1
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.8e-27 128.3 326 30.1
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.8e-27 128.3 559 25.8
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.1e-24 117.5 228 33.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 8.0e-20 102.8 146 47.9
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.6e-15 88.6 167 35.9
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 4.5e-15 87.0 91 48.4
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 9.4e-13 79.3 93 46.2
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 1.2e-10 72.4 62 59.7
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.8e-08 65.1 55 52.7


User provided reference genes

Program Settings